Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 2.3e-112 409.1 233 100.0
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 2.3e-112 409.1 233 100.0
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 1.9e-82 309.7 233 78.5
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 9.9e-79 297.4 233 71.7
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 5.1e-75 285.0 233 68.7
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 3.3e-74 282.3 230 75.2
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 3.6e-65 252.3 229 67.2
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.8e-64 250.0 234 70.5
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 1.2e-63 247.3 238 63.4
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 4.5e-63 245.4 181 81.2
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 5.8e-63 245.0 218 64.7
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 7.6e-63 244.6 239 61.9
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.3e-62 243.8 239 66.5
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 1.7e-62 243.4 237 65.8
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 1.7e-62 243.4 237 65.8
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 2.2e-62 243.0 174 81.0
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.9e-62 242.7 218 64.2
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 4.9e-62 241.9 250 60.4
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.9e-62 241.9 197 75.1
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 8.4e-62 241.1 187 75.9
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 1.4e-61 240.4 183 77.0
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 1.4e-61 240.4 231 65.4
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.9e-61 240.0 183 78.1
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.9e-61 240.0 225 67.1
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 1.9e-61 240.0 230 67.0
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 2.4e-61 239.6 233 63.9
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 2.4e-61 239.6 228 65.8
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 2.4e-61 239.6 184 76.1
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 3.2e-61 239.2 230 65.2
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 4.2e-61 238.8 233 63.9
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 4.2e-61 238.8 233 63.5
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 5.4e-61 238.4 230 62.6
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 5.4e-61 238.4 231 65.8
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.2e-60 237.3 230 62.2
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 2.7e-60 236.1 190 75.3
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 2.7e-60 236.1 236 65.3
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 2.7e-60 236.1 180 72.2
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 2.7e-60 236.1 171 78.9
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 4.6e-60 235.3 183 76.0
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 6.0e-60 235.0 240 64.2
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 6.0e-60 235.0 228 64.9
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 1.3e-59 233.8 239 62.8
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.3e-59 233.8 179 77.1
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 1.8e-59 233.4 212 71.2
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 3.9e-59 232.3 239 63.6
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 5.1e-59 231.9 233 61.4
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 5.1e-59 231.9 234 60.3
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 1.1e-58 230.7 195 68.2
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 1.5e-58 230.3 236 57.6
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 1.5e-58 230.3 243 59.7
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.5e-58 230.3 243 58.0
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.5e-58 230.3 191 68.1
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.5e-58 230.3 191 68.1
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 1.9e-58 229.9 242 58.7
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 2.5e-58 229.6 235 62.1
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 3.3e-58 229.2 233 64.8
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 4.3e-58 228.8 235 61.7
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 4.3e-58 228.8 235 62.1
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 4.3e-58 228.8 235 61.7
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 4.3e-58 228.8 234 60.3
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 4.3e-58 228.8 218 64.7
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 5.6e-58 228.4 235 62.1
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 5.6e-58 228.4 187 74.3
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 5.6e-58 228.4 234 64.1
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 5.6e-58 228.4 169 81.1
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 7.4e-58 228.0 237 60.8
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 7.4e-58 228.0 186 70.4
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 9.6e-58 227.6 233 62.2
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 9.6e-58 227.6 218 66.1
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.3e-57 227.3 244 61.9
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 1.6e-57 226.9 191 74.3
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 2.1e-57 226.5 183 73.8
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 2.8e-57 226.1 238 62.2
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 2.8e-57 226.1 257 59.5
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 4.8e-57 225.3 236 61.0
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 6.2e-57 224.9 184 72.3
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 8.1e-57 224.6 184 66.8
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.4e-56 223.8 177 76.3
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 1.4e-56 223.8 204 67.2
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 5.3e-56 221.9 184 71.7
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 9.0e-56 221.1 213 64.3
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 9.0e-56 221.1 184 66.8
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.2e-55 220.7 237 60.3
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 2.0e-55 219.9 237 60.3
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 2.0e-55 219.9 184 73.4
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 2.0e-55 219.9 225 60.9
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 3.4e-55 219.2 229 56.8
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 4.5e-55 218.8 183 73.8
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 2.9e-54 216.1 183 70.5
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 8.4e-54 214.5 194 63.4
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.1e-53 214.2 263 56.3
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.9e-53 213.4 236 59.3
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 7.1e-53 211.5 269 52.0
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 1.2e-52 210.7 194 62.9
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 4.3e-50 202.2 166 69.9
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 9.0e-48 194.5 255 53.3
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 3.4e-47 192.6 183 64.5
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.3e-46 190.7 190 61.1
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 2.9e-46 189.5 208 58.2
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 8.4e-46 188.0 253 49.0
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 1.4e-45 187.2 196 55.6
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 2.5e-45 186.4 218 55.0
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 4.2e-45 185.7 248 55.6
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 9.3e-45 184.5 146 71.2
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 2.7e-44 183.0 131 71.0
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 4.6e-44 182.2 182 56.6
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 1.8e-43 180.3 231 47.6
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.1e-40 171.0 130 80.0
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 2.9e-38 162.9 190 52.1
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.2e-37 159.5 187 59.9
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.8e-35 153.7 131 64.1
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 3.1e-32 142.9 259 46.3
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.1e-32 142.9 162 50.6
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 8.8e-27 124.8 96 69.8
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.1e-26 124.4 117 64.1
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.7e-25 119.4 96 67.7
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.3e-25 118.6 96 66.7
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 4.1e-24 115.9 123 49.6
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 9.1e-24 114.8 96 62.5
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 9.1e-24 114.8 188 43.6
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 4.5e-23 112.5 245 36.3
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 7.7e-23 111.7 89 78.7
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 1.3e-22 110.9 148 44.6
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 1.3e-22 110.9 129 48.1
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 1.1e-21 107.8 79 65.8
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 1.1e-21 107.8 255 34.9
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 2.5e-21 106.7 255 34.5
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.2e-20 104.4 211 37.9
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 1.6e-20 104.0 153 45.1
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.4e-19 100.9 74 70.3
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.2e-15 87.8 78 61.5
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.5e-15 85.9 220 38.2
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 8.5e-14 81.6 134 38.1
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 5.5e-13 79.0 210 33.3
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 9.7e-10 68.2 115 40.9
Ah.12g058210 Amaranthus hybridus HOM05D005346 ORTHO05D007051 5.3e-08 62.4 81 51.9
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 1.6e-07 60.8 185 30.3
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 3.8e-06 56.2 51 58.8
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 5.0e-06 55.8 146 34.2


User provided reference genes

Program Settings