Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28667 Selenicereus undatus HOM05D003461 ORTHO05D004386 0.0e+00 2507.6 1277 100.0
Hund28681 Selenicereus undatus HOM05D003461 ORTHO05D004386 0.0e+00 2507.6 1277 100.0
AUR62024833 Chenopodium quinoa HOM05D003461 ORTHO05D004386 0.0e+00 2060.8 1279 83.0
Ah.12g063310 Amaranthus hybridus HOM05D003461 ORTHO05D004386 0.0e+00 2059.6 1264 82.8
Sc09g0008870 Simmondsia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 2045.0 1272 81.9
EL10Ac2g02534 Beta vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 2017.3 1250 82.6
AUR62032384 Chenopodium quinoa HOM05D003461 ORTHO05D004386 0.0e+00 2010.0 1253 82.5
Dinv30215 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 1934.8 1270 77.2
Thecc.09G143900 Theobroma cacao HOM05D003461 ORTHO05D004386 0.0e+00 1919.8 1268 77.1
Atru.chr7.2323 Acer truncatum HOM05D003461 ORTHO05D004386 0.0e+00 1916.4 1271 77.3
COL.COLO4_24068 Corchorus olitorius HOM05D003461 ORTHO05D004386 0.0e+00 1915.2 1267 77.1
Cpa.g.sc91.7 Carica papaya HOM05D003461 ORTHO05D004386 0.0e+00 1906.3 1270 76.4
Manes.13G069700 Manihot esculenta HOM05D003461 ORTHO05D004386 0.0e+00 1903.6 1269 75.7
Dinv35880 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 1889.0 1249 76.7
Gorai.010G053900 Gossypium raimondii HOM05D003461 ORTHO05D004386 0.0e+00 1887.5 1271 76.1
Ciclev10007226m.g Citrus clementina HOM05D003461 ORTHO05D004386 0.0e+00 1887.1 1268 76.1
Gohir.A06G048100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1884.8 1271 76.0
Haze_21625 Corylus avellana HOM05D003461 ORTHO05D004386 0.0e+00 1882.8 1272 76.3
TAR383G0906 Trochodendron aralioides HOM05D003461 ORTHO05D004386 0.0e+00 1882.1 1271 75.4
Lj7C712G4 Lonicera japonica HOM05D003461 ORTHO05D004386 0.0e+00 1879.8 1270 75.1
RcHm_v2.0_Chr6g0312731 Rosa chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1878.6 1272 75.6
Sopen08g021790 Solanum pennellii HOM05D003461 ORTHO05D004386 0.0e+00 1875.9 1270 74.6
Gorai.009G011800 Gossypium raimondii HOM05D003461 ORTHO05D004386 0.0e+00 1873.2 1268 75.7
Gohir.A05G010700 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1869.7 1268 75.8
Gohir.D05G011400 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1867.8 1268 75.5
MD08G1135800 Malus domestica HOM05D003461 ORTHO05D004386 0.0e+00 1866.3 1271 75.7
Nn2g11834 Nelumbo nucifera HOM05D003461 ORTHO05D004386 0.0e+00 1862.4 1273 74.9
PGR044G2079 Punica granatum HOM05D003461 ORTHO05D004386 0.0e+00 1857.0 1267 74.8
CSS0003133 Camellia sinensis var. sinensis HOM05D003461 ORTHO05D004386 0.0e+00 1856.6 1258 74.9
CAN.G21.14 Capsicum annuum HOM05D003461 ORTHO05D004386 0.0e+00 1856.3 1270 73.7
Potri.018G034700 Populus trichocarpa HOM05D003461 ORTHO05D004386 0.0e+00 1855.5 1274 74.9
Duzib150G1527 Durio zibethinus HOM05D003461 ORTHO05D004386 0.0e+00 1854.3 1269 74.8
Prupe.1G466400 Prunus persica HOM05D003461 ORTHO05D004386 0.0e+00 1853.2 1270 74.6
FAN27G2808 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1851.3 1272 74.7
FvH4_2g30180 Fragaria vesca HOM05D003461 ORTHO05D004386 0.0e+00 1848.9 1273 74.9
Oeu019417.3 Olea europaea HOM05D003461 ORTHO05D004386 0.0e+00 1848.2 1270 73.4
FAN15G0070 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1847.4 1284 74.2
Cc08_g08280 Coffea canephora HOM05D003461 ORTHO05D004386 0.0e+00 1846.2 1268 73.5
FAN20G1067 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1845.5 1272 74.5
GSVIVG01035727001 Vitis vinifera HOM05D003461 ORTHO05D004386 0.0e+00 1845.5 1273 74.5
TWI34G1710 Tripterygium wilfordii HOM05D003461 ORTHO05D004386 0.0e+00 1842.8 1271 74.1
Sabra18G0035400 Salix brachista HOM05D003461 ORTHO05D004386 0.0e+00 1842.4 1297 73.4
DCAR_006261 Daucus carota HOM05D003461 ORTHO05D004386 0.0e+00 1841.2 1269 73.9
Aqoxy7G01835 Aquilegia oxysepala HOM05D003461 ORTHO05D004386 0.0e+00 1835.5 1275 73.6
THA.LOC104819890 Tarenaya hassleriana HOM05D003461 ORTHO05D004386 0.0e+00 1831.2 1267 73.9
Thhalv10000008m.g Eutrema salsugineum HOM05D003461 ORTHO05D004386 0.0e+00 1825.8 1265 72.6
CARHR115590 Cardamine hirsuta HOM05D003461 ORTHO05D004386 0.0e+00 1823.5 1265 72.6
Gohir.D06G048050 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1821.6 1236 75.8
BcaB06g28084 Brassica carinata HOM05D003461 ORTHO05D004386 0.0e+00 1818.1 1266 72.5
BcaC02g08333 Brassica carinata HOM05D003461 ORTHO05D004386 0.0e+00 1816.2 1265 72.1
A04p19870 Brassica napus HOM05D003461 ORTHO05D004386 0.0e+00 1816.2 1266 72.3
Sp4g05280 Schrenkiella parvula HOM05D003461 ORTHO05D004386 0.0e+00 1814.7 1265 72.6
AL4G17260 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 0.0e+00 1813.9 1265 72.3
Nitab4.5_0009600g0030 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 1811.6 1243 73.8
C04p55600 Brassica napus HOM05D003461 ORTHO05D004386 0.0e+00 1809.7 1267 72.1
Carub.0004s0545 Capsella rubella HOM05D003461 ORTHO05D004386 0.0e+00 1808.1 1266 72.5
Aa31sc76G80 Aethionema arabicum HOM05D003461 ORTHO05D004386 0.0e+00 1807.3 1265 72.0
BraA04t17575Z Brassica rapa HOM05D003461 ORTHO05D004386 0.0e+00 1806.2 1275 71.6
ECA240G1832 Erigeron canadensis HOM05D003461 ORTHO05D004386 0.0e+00 1803.9 1265 73.1
AT2G25660 Arabidopsis thaliana HOM05D003461 ORTHO05D004386 0.0e+00 1801.9 1265 72.1
BolC4t27084H Brassica oleracea HOM05D003461 ORTHO05D004386 0.0e+00 1800.8 1279 71.4
Migut.A00272 Erythranthe guttata HOM05D003461 ORTHO05D004386 0.0e+00 1800.8 1273 72.1
Phvul.001G055800 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1797.7 1274 72.5
PSO063G5065 Papaver somniferum HOM05D003461 ORTHO05D004386 0.0e+00 1794.6 1271 72.0
SGA_v2.0_scaffold27G11498 Striga asiatica HOM05D003461 ORTHO05D004386 0.0e+00 1794.2 1278 72.0
PSO782G2185 Papaver somniferum HOM05D003461 ORTHO05D004386 0.0e+00 1791.9 1271 71.8
Lj5g0000879 Lotus japonicus HOM05D003461 ORTHO05D004386 0.0e+00 1785.8 1272 72.1
CANSAT01G0438 Cannabis sativa HOM05D003461 ORTHO05D004386 0.0e+00 1783.1 1270 71.9
Lsat_1_v5_gn_5_45581 Lactuca sativa HOM05D003461 ORTHO05D004386 0.0e+00 1775.0 1291 72.1
Lalb_Chr11g0063991 Lupinus albus HOM05D003461 ORTHO05D004386 0.0e+00 1772.3 1277 70.9
Rhsim07G0154200 Rhododendron simsii HOM05D003461 ORTHO05D004386 0.0e+00 1771.5 1382 68.1
Eucgr.C02859 Eucalyptus grandis HOM05D003461 ORTHO05D004386 0.0e+00 1769.2 1269 71.2
Glyma.17G204000 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1766.1 1274 71.1
Solyc08g067860.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 0.0e+00 1760.0 1243 72.2
unitig_747.g21880 Utricularia gibba HOM05D003461 ORTHO05D004386 0.0e+00 1758.0 1269 70.0
Medtr1g010300 Medicago truncatula HOM05D003461 ORTHO05D004386 0.0e+00 1755.3 1272 70.4
Duzib168G0147 Durio zibethinus HOM05D003461 ORTHO05D004386 0.0e+00 1738.8 1268 70.9
FAN24G1347 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1738.0 1375 67.6
TPR.G20094 Trifolium pratense HOM05D003461 ORTHO05D004386 0.0e+00 1738.0 1273 69.9
Psat6g031040 Pisum sativum HOM05D003461 ORTHO05D004386 0.0e+00 1736.1 1272 70.0
HanXRQChr08g0221141 Helianthus annuus HOM05D003461 ORTHO05D004386 0.0e+00 1731.8 1268 71.2
arahy.Tifrunner.gnm1.ann1.4R6GA4 Arachis hypogaea HOM05D003461 ORTHO05D004386 0.0e+00 1724.5 1275 70.0
arahy.Tifrunner.gnm1.ann1.3VS957 Arachis hypogaea HOM05D003461 ORTHO05D004386 0.0e+00 1723.8 1328 67.7
SalBow4G0560 Salvia bowleyana HOM05D003461 ORTHO05D004386 0.0e+00 1716.8 1327 67.3
ClCG05G017220 Citrullus lanatus HOM05D003461 ORTHO05D004386 0.0e+00 1709.5 1272 69.2
MELO3C003666.2 Cucumis melo HOM05D003461 ORTHO05D004386 0.0e+00 1706.8 1304 67.8
CsaV3_3G046700 Cucumis sativus L. HOM05D003461 ORTHO05D004386 0.0e+00 1706.0 1292 67.6
Sed0017351 Sechium edule HOM05D003461 ORTHO05D004386 0.0e+00 1705.6 1272 68.9
Actinidia15711 Actinidia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1669.4 1256 69.3
ATR0037G074 Amborella trichopoda HOM05D003461 ORTHO05D004386 0.0e+00 1644.0 1274 65.9
HPP92_015152 Vanilla planifolia HOM05D003461 ORTHO05D004386 0.0e+00 1643.6 1270 66.5
Os01g0179400 Oryza sativa ssp. japonica HOM05D003461 ORTHO05D004386 0.0e+00 1627.8 1270 65.1
Zm00001eb122270 Zea mays HOM05D003461 ORTHO05D004386 0.0e+00 1614.7 1280 64.0
Glyma.04G072400 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1568.9 1277 63.5
Glyma.06G073700 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1568.1 1277 63.1
Lj1g0021913 Lotus japonicus HOM05D003461 ORTHO05D004386 0.0e+00 1547.7 1261 64.2
VMungo1309G1485 Vigna mungo HOM05D003461 ORTHO05D004386 0.0e+00 1533.1 1279 62.3
Medtr3g108080 Medicago truncatula HOM05D003461 ORTHO05D004386 0.0e+00 1502.6 1276 61.6
Psat5g027760 Pisum sativum HOM05D003461 ORTHO05D004386 0.0e+00 1497.6 1265 61.6
VMungo0647G2469 Vigna mungo HOM05D003461 ORTHO05D004386 0.0e+00 1489.2 1106 69.1
vmacro05447 Vaccinium macrocarpon HOM05D003461 ORTHO05D004386 0.0e+00 1407.9 991 71.4
MD15G1115200 Malus domestica HOM05D003461 ORTHO05D004386 0.0e+00 1393.6 937 76.3
CiPaw.07G217600 Carya illinoinensis HOM05D003461 ORTHO05D004386 0.0e+00 1366.3 855 80.7
Ca_15696_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 0.0e+00 1339.7 1225 58.3
Mapoly0004s0170 Marchantia polymorpha HOM05D003461 ORTHO05D004386 0.0e+00 1267.7 1287 53.9
Glyma.14G129400 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1262.3 858 74.7
TPR.G34693 Trifolium pratense HOM05D003461 ORTHO05D004386 0.0e+00 1232.6 1050 61.6
Nitab4.5_0000125g0130 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 1231.5 991 65.1
Pp3c4_150 Physcomitrium patens HOM05D003461 ORTHO05D004386 0.0e+00 1211.8 1304 50.7
Peaxi162Scf00105g01316 Petunia axillaris HOM05D003461 ORTHO05D004386 0.0e+00 1199.5 872 69.0
SMO347G0057 Selaginella moellendorffii HOM05D003461 ORTHO05D004386 0.0e+00 1152.1 1260 50.3
Phvul.009G098100 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1147.5 993 60.2
CBR_g20101 Chara braunii HOM05D003461 ORTHO05D004386 0.0e+00 1115.5 1383 46.7
AagrBONN_evm.TU.Sc2ySwM_228.5632 Anthoceros agrestis HOM05D003461 ORTHO05D004386 2.8e-284 982.6 1079 51.3
Actinidia14640 Actinidia chinensis HOM05D003461 ORTHO05D004386 2.9e-265 919.5 678 69.2
Gohir.D06G048151 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.3e-262 910.6 664 70.5
Actinidia14639 Actinidia chinensis HOM05D003461 ORTHO05D004386 3.7e-252 875.9 556 79.3
SEGI_10354 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 3.7e-220 769.6 664 57.8
CDE07G1701 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 8.9e-206 721.8 522 67.0
AUR62011223 Chenopodium quinoa HOM05D003461 ORTHO05D004386 3.0e-169 600.5 396 77.8
Peaxi162Scf00105g00133 Petunia axillaris HOM05D003461 ORTHO05D004386 2.5e-160 570.9 348 83.0
MCO11G459 Micromonas commoda HOM05D003461 ORTHO05D004386 5.8e-157 559.7 1089 33.6
AL4G17180 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 1.2e-146 525.4 398 70.9
CDE07G0137 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 6.5e-132 476.5 274 87.6
Glyma.14G129500 Glycine max HOM05D003461 ORTHO05D004386 2.5e-123 448.0 375 62.4
AL4G17190 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 3.7e-111 407.5 276 71.4
MD15G1115000 Malus domestica HOM05D003461 ORTHO05D004386 3.5e-109 401.0 343 61.2
SEGI_09564 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 8.0e-90 336.7 380 48.7
Nitab4.5_0000125g0120 Nicotiana tabacum HOM05D003461 ORTHO05D004386 3.4e-88 331.3 257 64.2
SEGI_20580 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 3.6e-82 311.2 364 47.8
TPR.G27605 Trifolium pratense HOM05D003461 ORTHO05D004386 3.6e-74 284.6 256 55.9
HPP92_015178 Vanilla planifolia HOM05D003461 ORTHO05D004386 2.4e-62 245.4 364 40.7
VMungo0647G2587 Vigna mungo HOM05D003461 ORTHO05D004386 7.1e-62 243.8 140 91.4
Zm00001eb088480 Zea mays HOM05D003461 ORTHO05D004386 2.3e-52 212.2 117 91.5
Zm00001eb305240 Zea mays HOM05D003461 ORTHO05D004386 3.2e-46 191.8 107 91.6
Cre05.g243150 Chlamydomonas reinhardtii HOM05D003461 ORTHO05D004386 2.5e-43 182.2 676 24.7
HPP92_015177 Vanilla planifolia HOM05D003461 ORTHO05D004386 2.6e-40 172.2 185 54.6
Lsat_1_v5_gn_9_70541 Lactuca sativa HOM05D003461 ORTHO05D004386 7.2e-30 137.5 140 56.4
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 7.9e-29 134.0 108 63.9
SEGI_12849 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 9.7e-27 127.1 96 70.8
VMungo0647G0881 Vigna mungo HOM05D003461 ORTHO05D004386 8.2e-26 124.0 134 53.7
Gorai.013G159000 Gossypium raimondii HOM05D003461 ORTHO05D004386 4.1e-25 121.7 87 72.4
Lsat_1_v5_gn_4_41661 Lactuca sativa HOM05D003461 ORTHO05D004386 6.9e-25 120.9 98 68.4
Gohir.D10G105800 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.5e-24 119.8 81 74.1
Gohir.D13G142100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 2.0e-24 119.4 82 74.4
Lsat_1_v5_gn_9_53460 Lactuca sativa HOM05D003461 ORTHO05D004386 2.2e-23 115.9 98 65.3
Gohir.D01G114000 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.1e-22 113.6 70 81.4
Lsat_1_v5_gn_0_34461 Lactuca sativa HOM05D003461 ORTHO05D004386 1.6e-21 109.8 68 79.4
RcHm_v2.0_Chr1g0381071 Rosa chinensis HOM05D003461 ORTHO05D004386 1.8e-20 106.3 57 91.2
RcHm_v2.0_Chr4g0412921 Rosa chinensis HOM05D003461 ORTHO05D004386 1.1e-19 103.6 57 89.5
VMungo1127G1644 Vigna mungo HOM05D003461 ORTHO05D004386 3.3e-19 102.1 66 66.7
Potri.006G246401 Populus trichocarpa HOM05D003461 ORTHO05D004386 5.0e-15 88.2 54 83.3
EL10Ac2g02535 Beta vulgaris HOM05D003461 ORTHO05D089362 4.2e-14 85.1 178 36.5
Lsat_1_v5_gn_9_113480 Lactuca sativa HOM05D003461 ORTHO05D004386 3.0e-12 79.0 62 66.1
Lsat_1_v5_gn_3_38460 Lactuca sativa HOM05D003461 ORTHO05D014082 7.4e-11 74.3 52 71.2
MBI14_g27819_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D022889 2.9e-07 62.4 52 59.6
MBI19_g30558_MAGBIO Magnolia biondii HOM05D003461 ORTHO05D022889 1.5e-06 60.1 45 66.7
Solyc08g067870.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 1.5e-06 60.1 28 92.9
Hma1.2p1_0175F.1_g077280 Hydrangea macrophylla HOM05D003461 ORTHO05D004386 1.9e-06 59.7 28 92.9
Peaxi162Scf00105g01315 Petunia axillaris HOM05D003461 ORTHO05D004386 1.9e-06 59.7 28 92.9
Nitab4.5_0009600g0020 Nicotiana tabacum HOM05D003461 ORTHO05D004386 3.2e-06 58.9 28 92.9


User provided reference genes

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