Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 6.8e-50 200.3 97 100.0
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 1.9e-31 139.0 74 90.5
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 1.9e-31 139.0 74 90.5
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.2e-31 138.3 74 91.9
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.2e-31 138.3 74 91.9
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.2e-31 138.3 74 91.9
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.2e-31 138.3 74 91.9
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 7.1e-31 137.1 74 90.5
HanXRQChr00c0272g0573001 Helianthus annuus HOM05D000388 ORTHO05D009843 9.3e-31 136.7 74 90.5
HanXRQChr00c0439g0574751 Helianthus annuus HOM05D000388 ORTHO05D009843 9.3e-31 136.7 74 90.5
HanXRQChr02g0041691 Helianthus annuus HOM05D000388 ORTHO05D009843 9.3e-31 136.7 74 90.5
HanXRQChr04g0099341 Helianthus annuus HOM05D000388 ORTHO05D009843 9.3e-31 136.7 74 90.5
HanXRQChr05g0151391 Helianthus annuus HOM05D000388 ORTHO05D009843 9.3e-31 136.7 74 90.5
HanXRQChr07g0201051 Helianthus annuus HOM05D000388 ORTHO05D009843 9.3e-31 136.7 74 90.5
HanXRQChr08g0210251 Helianthus annuus HOM05D000388 ORTHO05D009843 9.3e-31 136.7 74 90.5
HanXRQChr10g0282451 Helianthus annuus HOM05D000388 ORTHO05D009843 9.3e-31 136.7 74 90.5
HanXRQChr11g0326691 Helianthus annuus HOM05D000388 ORTHO05D009843 9.3e-31 136.7 74 90.5
HanXRQCPg0579911 Helianthus annuus HOM05D000388 ORTHO05D009843 9.3e-31 136.7 74 90.5
Migut.D01348 Erythranthe guttata HOM05D000388 ORTHO05D009843 1.6e-30 136.0 74 89.2
Migut.J01359 Erythranthe guttata HOM05D000388 ORTHO05D009843 1.6e-30 136.0 74 89.2
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 1.6e-30 136.0 74 90.5
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 1.6e-30 136.0 95 74.7
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 2.7e-30 135.2 101 71.3
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 2.7e-30 135.2 101 71.3
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 2.7e-30 135.2 101 71.3
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 2.7e-30 135.2 74 89.2
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 4.6e-30 134.4 74 86.5
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 6.0e-30 134.0 101 69.3
CiPaw.10G111400 Carya illinoinensis HOM05D000388 ORTHO05D009843 6.0e-30 134.0 74 89.2
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 6.0e-30 134.0 95 72.6
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 7.9e-30 133.7 74 89.2
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 7.9e-30 133.7 74 87.8
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.0e-29 133.3 74 87.8
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 1.8e-29 132.5 101 69.3
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 1.8e-29 132.5 101 69.3
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 2.3e-29 132.1 74 87.8
DCAR_032482 Daucus carota HOM05D000388 ORTHO05D009843 3.0e-29 131.7 74 86.5
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 3.0e-29 131.7 74 86.5
Peaxi162Scf00575g00006 Petunia axillaris HOM05D000388 ORTHO05D009843 3.0e-29 131.7 70 91.4
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 3.9e-29 131.3 74 85.1
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 3.9e-29 131.3 74 85.1
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 3.9e-29 131.3 74 85.1
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 3.9e-29 131.3 74 85.1
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 3.9e-29 131.3 74 85.1
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 3.9e-29 131.3 74 85.1
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 3.9e-29 131.3 74 85.1
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 3.9e-29 131.3 74 85.1
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 3.9e-29 131.3 74 85.1
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 3.9e-29 131.3 74 85.1
Thhalv10011029m.g Eutrema salsugineum HOM05D000388 ORTHO05D009843 5.1e-29 131.0 74 85.1
Sed0021792 Sechium edule HOM05D000388 ORTHO05D009843 5.1e-29 131.0 66 93.9
Solyc00g500055.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 5.1e-29 131.0 72 90.3
Solyc00g500137.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 5.1e-29 131.0 72 90.3
Solyc00g500207.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 5.1e-29 131.0 72 90.3
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 6.7e-29 130.6 74 85.1
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 8.7e-29 130.2 74 86.5
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 1.1e-28 129.8 74 86.5
Gohir.A05G086166 Gossypium hirsutum HOM05D000388 ORTHO05D009843 3.3e-28 128.3 74 85.1
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 5.6e-28 127.5 74 83.8
AL2G21360 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 1.6e-27 125.9 99 67.7
BolSC44t60854H Brassica oleracea HOM05D000388 ORTHO05D009843 3.7e-27 124.8 94 71.3
Gohir.A01G140300 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.1e-26 123.2 74 81.1
Gohir.A01G164720 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.8e-26 122.5 93 68.8
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 6.9e-26 120.6 91 69.2
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 9.0e-26 120.2 72 84.7
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 1.5e-25 119.4 74 81.1
A06p23300 Brassica napus HOM05D000388 ORTHO05D000473 2.6e-25 118.6 70 80.0
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 5.8e-25 117.5 74 78.4
EL10Ac1g02280 Beta vulgaris HOM05D000388 ORTHO05D009843 9.9e-25 116.7 74 82.4
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 3.8e-24 114.8 95 63.2
BolC9t56909H Brassica oleracea HOM05D000388 ORTHO05D009843 4.9e-24 114.4 67 82.1
HanXRQChr00c0345g0573851 Helianthus annuus HOM05D000388 ORTHO05D009843 8.4e-24 113.6 56 94.6
Oeu017222.1 Olea europaea HOM05D000388 ORTHO05D009843 4.2e-23 111.3 74 77.0
Nitab4.5_0025922g0010 Nicotiana tabacum HOM05D000388 ORTHO05D009843 6.0e-22 107.5 59 89.8
TAR629G1277 Trochodendron aralioides HOM05D000388 ORTHO05D009843 6.0e-22 107.5 59 89.8
Oeu062844.1 Olea europaea HOM05D000388 ORTHO05D009843 1.3e-21 106.3 72 75.0
Eucgr.C02020 Eucalyptus grandis HOM05D000388 ORTHO05D009843 8.7e-21 103.6 74 73.0
Nitab4.5_0007186g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009843 8.7e-21 103.6 59 86.4
EL10As28g24250 Beta vulgaris HOM05D000388 ORTHO05D000473 6.2e-19 97.4 56 83.9
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 3.1e-18 95.1 73 61.6
Phvul.010G068900 Phaseolus vulgaris HOM05D000388 ORTHO05D009843 4.5e-17 91.3 48 87.5
CSS0013534 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D009843 2.2e-16 89.0 52 86.5
Medtr5g063380 Medicago truncatula HOM05D000388 ORTHO05D009843 3.8e-16 88.2 48 87.5
arahy.Tifrunner.gnm1.ann1.A3NG1I Arachis hypogaea HOM05D000388 ORTHO05D009843 9.3e-15 83.6 92 55.4
Peaxi162Scf00455g00046 Petunia axillaris HOM05D000388 ORTHO05D009843 9.3e-15 83.6 70 67.1
Sopen10g013070 Solanum pennellii HOM05D000388 ORTHO05D009843 1.6e-11 72.8 36 86.1
CsaV3_6G032160 Cucumis sativus L. HOM05D000388 ORTHO05D009843 6.3e-11 70.9 42 81.0
Gohir.A07G155821 Gossypium hirsutum HOM05D000388 ORTHO05D009843 5.3e-10 67.8 45 75.6
arahy.Tifrunner.gnm1.ann1.90KAHV Arachis hypogaea HOM05D000388 ORTHO05D009843 2.6e-09 65.5 53 66.0
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 1.1e-07 60.1 65 49.2
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.4e-07 59.7 65 49.2
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 3.2e-07 58.5 64 48.4
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 3.2e-07 58.5 65 47.7
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 3.2e-07 58.5 65 47.7
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 4.2e-07 58.2 64 48.4
arahy.Tifrunner.gnm1.ann1.EPB7VR Arachis hypogaea HOM05D000176 ORTHO05D000106 5.5e-07 57.8 26 96.2
EL10As15g24141 Beta vulgaris HOM05D000388 ORTHO05D009843 9.3e-07 57.0 38 78.9
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 9.3e-07 57.0 56 48.2
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 9.3e-07 57.0 64 45.3
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 9.3e-07 57.0 64 45.3
BolC9t56932H Brassica oleracea HOM05D000388 ORTHO05D009843 1.2e-06 56.6 27 92.6
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 1.6e-06 56.2 64 46.9
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 2.1e-06 55.8 64 45.3
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 2.1e-06 55.8 65 44.6
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 2.7e-06 55.5 56 48.2
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 2.7e-06 55.5 56 50.0
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 2.7e-06 55.5 64 45.3
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 2.7e-06 55.5 64 45.3
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 2.7e-06 55.5 64 45.3
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 3.6e-06 55.1 56 46.4
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 3.6e-06 55.1 56 46.4
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 3.6e-06 55.1 63 44.4
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 3.6e-06 55.1 63 44.4
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 4.6e-06 54.7 65 44.6
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 4.6e-06 54.7 65 44.6
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 4.6e-06 54.7 63 42.9
Nitab4.5_0002607g0050 Nicotiana tabacum HOM05D000388 ORTHO05D009843 4.6e-06 54.7 39 76.9
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 6.1e-06 54.3 62 41.9
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 6.1e-06 54.3 62 41.9
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 6.1e-06 54.3 62 41.9
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 7.9e-06 53.9 56 46.4
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 7.9e-06 53.9 65 41.5


User provided reference genes

Program Settings