Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28305 Selenicereus undatus HOM05D003709 ORTHO05D004364 6.0e-34 147.5 110 100.0
Hund28303 Selenicereus undatus HOM05D003709 ORTHO05D004364 3.4e-29 131.7 95 89.5
AUR62006246 Chenopodium quinoa HOM05D003709 ORTHO05D004364 1.1e-22 110.2 105 57.1
AUR62028486 Chenopodium quinoa HOM05D003709 ORTHO05D004364 3.1e-22 108.6 105 58.1
CAN.G841.14 Capsicum annuum HOM05D003709 ORTHO05D004364 5.2e-22 107.8 87 66.7
Gohir.A04G147400 Gossypium hirsutum HOM05D003709 ORTHO05D004364 6.8e-22 107.5 87 66.7
Gohir.A09G141700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 6.8e-22 107.5 87 66.7
Gohir.D09G133000 Gossypium hirsutum HOM05D003709 ORTHO05D004364 6.8e-22 107.5 87 66.7
Gorai.006G152500 Gossypium raimondii HOM05D003709 ORTHO05D004364 6.8e-22 107.5 87 66.7
EL10Ac7g16841 Beta vulgaris HOM05D003709 ORTHO05D004364 1.2e-21 106.7 106 53.8
EL10Ac7g16842 Beta vulgaris HOM05D003709 ORTHO05D004364 1.2e-21 106.7 106 53.8
ECA247G0210 Erigeron canadensis HOM05D003709 ORTHO05D004364 1.2e-21 106.7 87 63.2
Solyc10g083220.3 Solanum lycopersicum HOM05D003709 ORTHO05D004364 1.2e-21 106.7 84 67.9
Aqoxy4G02712 Aquilegia oxysepala HOM05D003709 ORTHO05D004364 1.5e-21 106.3 83 66.3
PGR004G2656 Punica granatum HOM05D003709 ORTHO05D004364 2.0e-21 105.9 87 64.4
Ah.15g090600 Amaranthus hybridus HOM05D003709 ORTHO05D004364 2.6e-21 105.5 85 67.1
Hma1.2p1_0245F.1_g101590 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 2.6e-21 105.5 87 64.4
Hma1.2p1_1724F.1_g299425 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 2.6e-21 105.5 87 64.4
Sopen10g032700 Solanum pennellii HOM05D003709 ORTHO05D004364 2.6e-21 105.5 87 65.5
PGSC0003DMG400028247 Solanum tuberosum HOM05D003709 ORTHO05D004364 2.6e-21 105.5 87 65.5
THA.LOC104803461 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 2.6e-21 105.5 82 65.9
THA.LOC104826817 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 2.6e-21 105.5 82 65.9
Cc06_g06250 Coffea canephora HOM05D003709 ORTHO05D004364 4.4e-21 104.8 87 64.4
Duzib093G0911 Durio zibethinus HOM05D003709 ORTHO05D004364 5.8e-21 104.4 87 63.2
HanXRQChr08g0228531 Helianthus annuus HOM05D003709 ORTHO05D004364 5.8e-21 104.4 87 60.9
Nitab4.5_0001801g0070 Nicotiana tabacum HOM05D003709 ORTHO05D004364 5.8e-21 104.4 87 64.4
QL07p038048 Quercus lobata HOM05D003709 ORTHO05D004364 5.8e-21 104.4 90 62.2
TWI77G0334 Tripterygium wilfordii HOM05D003709 ORTHO05D004364 5.8e-21 104.4 87 63.2
GSVIVG01033901001 Vitis vinifera HOM05D003709 ORTHO05D004364 5.8e-21 104.4 87 63.2
Cpa.g.c29173.2 Carica papaya HOM05D003709 ORTHO05D004364 7.6e-21 104.0 87 64.4
CiPaw.10G014600 Carya illinoinensis HOM05D003709 ORTHO05D004364 7.6e-21 104.0 87 63.2
Oeu007203.1 Olea europaea HOM05D003709 ORTHO05D004364 7.6e-21 104.0 86 65.1
PSO357G0160 Papaver somniferum HOM05D003709 ORTHO05D004364 7.6e-21 104.0 87 62.1
Gorai.007G357100 Gossypium raimondii HOM05D003709 ORTHO05D004364 9.9e-21 103.6 87 64.4
RcHm_v2.0_Chr6g0269071 Rosa chinensis HOM05D003709 ORTHO05D004364 9.9e-21 103.6 87 62.1
vmacro07432 Vaccinium macrocarpon HOM05D003709 ORTHO05D004364 9.9e-21 103.6 87 62.1
MSTRG.5871 Avicennia marina HOM05D003709 ORTHO05D004364 1.3e-20 103.2 87 60.9
Peaxi162Scf00096g00098 Petunia axillaris HOM05D003709 ORTHO05D004364 1.3e-20 103.2 87 64.4
Thecc.05G096700 Theobroma cacao HOM05D003709 ORTHO05D004364 1.3e-20 103.2 87 63.2
Dinv31727 Davidia involucrata HOM05D003709 ORTHO05D004364 1.7e-20 102.8 87 62.1
Gorai.004G000400 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.7e-20 102.8 87 64.4
HPP92_028584 Vanilla planifolia HOM05D003709 ORTHO05D004364 1.7e-20 102.8 87 63.2
Actinidia12698 Actinidia chinensis HOM05D003709 ORTHO05D004364 2.2e-20 102.4 87 62.1
Actinidia18412 Actinidia chinensis HOM05D003709 ORTHO05D004364 2.2e-20 102.4 87 62.1
CDE04G0652 Ceratophyllum demersum HOM05D003709 ORTHO05D004364 2.2e-20 102.4 87 62.1
Manes.08G029100 Manihot esculenta HOM05D003709 ORTHO05D004364 2.2e-20 102.4 88 62.5
Ciclev10013818m.g Citrus clementina HOM05D003709 ORTHO05D004364 2.9e-20 102.1 89 61.8
Haze_19671 Corylus avellana HOM05D003709 ORTHO05D004364 3.8e-20 101.7 91 59.3
FvH4_2g10910 Fragaria vesca HOM05D003709 ORTHO05D004364 3.8e-20 101.7 87 60.9
FAN15G3210 Fragaria x ananassa HOM05D003709 ORTHO05D004364 3.8e-20 101.7 87 60.9
FAN20G0151 Fragaria x ananassa HOM05D003709 ORTHO05D004364 3.8e-20 101.7 87 60.9
FAN24G0281 Fragaria x ananassa HOM05D003709 ORTHO05D004364 3.8e-20 101.7 87 60.9
VMungo1383G1751 Vigna mungo HOM05D003709 ORTHO05D004364 3.8e-20 101.7 86 62.8
CSS0033506 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 4.9e-20 101.3 87 62.1
CARHR206940 Cardamine hirsuta HOM05D003709 ORTHO05D004364 4.9e-20 101.3 84 64.3
ClCG03G000710 Citrullus lanatus HOM05D003709 ORTHO05D004364 4.9e-20 101.3 86 61.6
Thhalv10014881m.g Eutrema salsugineum HOM05D003709 ORTHO05D004364 4.9e-20 101.3 106 55.7
FAN27G1255 Fragaria x ananassa HOM05D003709 ORTHO05D004364 4.9e-20 101.3 87 60.9
Gohir.A13G235900 Gossypium hirsutum HOM05D003709 ORTHO05D004364 4.9e-20 101.3 87 63.2
Lsat_1_v5_gn_9_14520 Lactuca sativa HOM05D003709 ORTHO05D004364 4.9e-20 101.3 87 59.8
CSS0019397 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 6.4e-20 100.9 87 62.1
Lj1C125T5 Lonicera japonica HOM05D003709 ORTHO05D004364 6.4e-20 100.9 105 54.3
MBI17_g01496_MAGBIO Magnolia biondii HOM05D003709 ORTHO05D004364 6.4e-20 100.9 87 62.1
Nitab4.5_0005187g0010 Nicotiana tabacum HOM05D003709 ORTHO05D004364 6.4e-20 100.9 85 65.9
PSO339G2742 Papaver somniferum HOM05D003709 ORTHO05D004364 6.4e-20 100.9 88 60.2
Sp6g36640 Schrenkiella parvula HOM05D003709 ORTHO05D004364 6.4e-20 100.9 106 55.7
SGA_v2.0_scaffold13G06687 Striga asiatica HOM05D003709 ORTHO05D004364 6.4e-20 100.9 87 60.9
Carub.0006s0511 Capsella rubella HOM05D003709 ORTHO05D004364 8.4e-20 100.5 105 56.2
Glyma.19G196500 Glycine max HOM05D003709 ORTHO05D004364 8.4e-20 100.5 87 63.2
Phvul.001G193000 Phaseolus vulgaris HOM05D003709 ORTHO05D004364 8.4e-20 100.5 86 62.8
Actinidia05396 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.1e-19 100.1 87 60.9
Aa31LG11G7240 Aethionema arabicum HOM05D003709 ORTHO05D004364 1.1e-19 100.1 84 63.1
Aa31sc52G10 Aethionema arabicum HOM05D003709 ORTHO05D004364 1.1e-19 100.1 84 63.1
MD10G1058500 Malus domestica HOM05D003709 ORTHO05D004364 1.1e-19 100.1 86 61.6
Medtr7g105350 Medicago truncatula HOM05D003709 ORTHO05D004364 1.1e-19 100.1 86 62.8
Nn6g34801 Nelumbo nucifera HOM05D003709 ORTHO05D004364 1.1e-19 100.1 87 60.9
AL6G16240 Arabidopsis lyrata HOM05D003709 ORTHO05D004364 1.4e-19 99.8 84 64.3
AT5G06240 Arabidopsis thaliana HOM05D003709 ORTHO05D004364 1.4e-19 99.8 84 64.3
A10p30240 Brassica napus HOM05D003709 ORTHO05D004364 1.4e-19 99.8 106 54.7
BraA10t45062Z Brassica rapa HOM05D003709 ORTHO05D004364 1.4e-19 99.8 106 54.7
Eucgr.A02626 Eucalyptus grandis HOM05D003709 ORTHO05D004364 1.4e-19 99.8 87 59.8
Glyma.03G198800 Glycine max HOM05D003709 ORTHO05D004364 1.4e-19 99.8 87 60.9
HanXRQChr04g0114081 Helianthus annuus HOM05D003709 ORTHO05D004364 1.4e-19 99.8 87 60.9
Psat3g030960 Pisum sativum HOM05D003709 ORTHO05D004364 1.4e-19 99.8 85 61.2
Sabra16G0080200 Salix brachista HOM05D003709 ORTHO05D004364 1.4e-19 99.8 107 49.5
Sed0021250 Sechium edule HOM05D003709 ORTHO05D004364 1.4e-19 99.8 86 60.5
Potri.016G074700 Populus trichocarpa HOM05D003709 ORTHO05D004364 1.9e-19 99.4 86 59.3
BcaB01g05734 Brassica carinata HOM05D003709 ORTHO05D004364 2.4e-19 99.0 84 63.1
Gohir.A10G101550 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.4e-19 99.0 87 62.1
Atru.chr8.1435 Acer truncatum HOM05D003709 ORTHO05D004364 3.2e-19 98.6 85 62.4
BcaC06g32330 Brassica carinata HOM05D003709 ORTHO05D004364 3.2e-19 98.6 84 63.1
BcaC06g32333 Brassica carinata HOM05D003709 ORTHO05D004364 3.2e-19 98.6 84 63.1
C09p70650 Brassica napus HOM05D003709 ORTHO05D004364 3.2e-19 98.6 84 63.1
BolC9t59821H Brassica oleracea HOM05D003709 ORTHO05D004364 3.2e-19 98.6 84 63.1
CSS0048031 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 3.2e-19 98.6 87 60.9
CANSAT64G1889 Cannabis sativa HOM05D003709 ORTHO05D004364 3.2e-19 98.6 87 59.8
Ciclev10012932m.g Citrus clementina HOM05D003709 ORTHO05D004364 3.2e-19 98.6 89 59.6
MD05G1051100 Malus domestica HOM05D003709 ORTHO05D004364 3.2e-19 98.6 86 60.5
Prupe.8G077900 Prunus persica HOM05D003709 ORTHO05D004364 3.2e-19 98.6 86 61.6
A03p02630 Brassica napus HOM05D003709 ORTHO05D004364 4.1e-19 98.2 106 53.8
BraA03t09624Z Brassica rapa HOM05D003709 ORTHO05D004364 4.1e-19 98.2 106 53.8
CsaV3_3G037560 Cucumis sativus L. HOM05D003709 ORTHO05D004364 4.1e-19 98.2 86 60.5
Lalb_Chr20g0111541 Lupinus albus HOM05D003709 ORTHO05D004364 4.1e-19 98.2 86 60.5
Lj2g0024912 Lotus japonicus HOM05D003709 ORTHO05D004364 5.4e-19 97.8 86 59.3
Gohir.A01G177700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 7.1e-19 97.4 87 60.9
Ca_09030_v3 Cicer arietinum L. HOM05D003709 ORTHO05D004364 9.2e-19 97.1 86 59.3
DCAR_020733 Daucus carota HOM05D003709 ORTHO05D004364 9.2e-19 97.1 87 59.8
Sabra06G0074500 Salix brachista HOM05D003709 ORTHO05D004364 1.2e-18 96.7 86 57.0
arahy.Tifrunner.gnm1.ann1.K65CIQ Arachis hypogaea HOM05D003709 ORTHO05D004364 2.1e-18 95.9 86 60.5
arahy.Tifrunner.gnm1.ann1.VRIY4R Arachis hypogaea HOM05D003709 ORTHO05D004364 2.1e-18 95.9 86 60.5
Gorai.002G197000 Gossypium raimondii HOM05D003709 ORTHO05D004364 4.6e-18 94.7 81 64.2
MELO3C009499.2 Cucumis melo HOM05D003709 ORTHO05D004364 6.0e-18 94.4 86 57.0
Migut.J00663 Erythranthe guttata HOM05D003709 ORTHO05D004364 6.0e-18 94.4 88 54.5
Gohir.D04G000040 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.0e-17 93.6 99 54.5
Gorai.012G000500 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.3e-17 93.2 110 50.0
ATR0315G087 Amborella trichopoda HOM05D003709 ORTHO05D004364 3.9e-17 91.7 91 54.9
Hma1.2p1_2017F.1_g311180 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 3.9e-17 91.7 126 45.2
BcaB01g05985 Brassica carinata HOM05D003709 ORTHO05D004364 5.1e-17 91.3 125 45.6
TPR.G23331 Trifolium pratense HOM05D003709 ORTHO05D004364 5.1e-17 91.3 87 55.2
Os05g0112750 Oryza sativa ssp. japonica HOM05D003709 ORTHO05D004364 2.5e-16 89.0 83 54.2
Gohir.A13G149700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.3e-16 88.6 82 59.8
Dinv21156 Davidia involucrata HOM05D003709 ORTHO05D004364 1.6e-15 86.3 85 54.1
Zm00001eb266720 Zea mays HOM05D003709 ORTHO05D004364 1.6e-15 86.3 96 47.9
Rhsim03G0069600 Rhododendron simsii HOM05D003709 ORTHO05D004364 4.7e-15 84.7 125 40.8
TAR623G0195 Trochodendron aralioides HOM05D003709 ORTHO05D004364 6.2e-15 84.3 77 58.4
Peaxi162Scf00013g00154 Petunia axillaris HOM05D003709 ORTHO05D004364 4.0e-14 81.6 64 67.2
Haze_19660 Corylus avellana HOM05D003709 ORTHO05D004364 6.9e-14 80.9 112 45.5
unitig_744.g24704 Utricularia gibba HOM05D003709 ORTHO05D004364 3.4e-13 78.6 112 42.9
Gohir.D01G158750 Gossypium hirsutum HOM05D003709 ORTHO05D004364 4.9e-12 74.7 76 55.3
Gohir.D02G000500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.2e-11 72.0 89 49.4
Sc20g0006470 Simmondsia chinensis HOM05D003709 ORTHO05D004364 2.7e-10 68.9 33 90.9
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.7e-09 66.2 46 69.6
Gohir.A05G416501 Gossypium hirsutum HOM05D001765 ORTHO05D003527 3.9e-09 65.1 38 78.9
Gohir.A05G416901 Gossypium hirsutum HOM05D001765 ORTHO05D003527 3.9e-09 65.1 38 78.9
COL.COLO4_29662 Corchorus olitorius HOM05D003709 ORTHO05D004364 5.1e-09 64.7 32 90.6
Gohir.A12G074200 Gossypium hirsutum HOM05D003709 ORTHO05D004364 5.1e-09 64.7 32 90.6
Gorai.007G188700 Gossypium raimondii HOM05D003709 ORTHO05D004364 5.1e-09 64.7 32 90.6
Nn2g14234 Nelumbo nucifera HOM05D003709 ORTHO05D004364 8.7e-09 63.9 76 47.4
SGA_v2.0_scaffold123G33400 Striga asiatica HOM05D003709 ORTHO05D004364 8.7e-09 63.9 32 84.4
Gohir.1Z049623 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.1e-08 63.5 30 93.3
Gohir.A12G001133 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.1e-08 63.5 41 75.6
Gohir.1Z049729 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.5e-08 63.2 48 70.8
Gohir.D04G000065 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.5e-08 63.2 48 70.8
Gohir.D11G326500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.3e-08 62.0 30 90.0
Actinidia27230 Actinidia chinensis HOM05D003709 ORTHO05D004364 5.6e-08 61.2 30 86.7
Actinidia28628 Actinidia chinensis HOM05D003709 ORTHO05D004364 5.6e-08 61.2 30 86.7
Actinidia37294 Actinidia chinensis HOM05D003709 ORTHO05D004364 5.6e-08 61.2 30 86.7
AUR62028484 Chenopodium quinoa HOM05D003709 ORTHO05D138253 5.6e-08 61.2 30 86.7
AUR62028485 Chenopodium quinoa HOM05D003709 ORTHO05D004364 5.6e-08 61.2 30 86.7
Gorai.006G066600 Gossypium raimondii HOM05D003709 ORTHO05D004364 7.3e-08 60.8 31 93.5
Gohir.A03G211700 Gossypium hirsutum HOM05D001759 ORTHO05D004364 1.3e-07 60.1 40 72.5
ClCG10G018670 Citrullus lanatus HOM05D003709 ORTHO05D004364 1.6e-07 59.7 27 96.3
COL.COLO4_29661 Corchorus olitorius HOM05D003709 ORTHO05D004364 3.6e-07 58.5 31 87.1
Haze_00443 Corylus avellana HOM05D000273 ORTHO05D000198 4.8e-07 58.2 32 75.0
Haze_09934 Corylus avellana HOM05D003709 ORTHO05D004364 4.8e-07 58.2 32 75.0
MD13G1200900 Malus domestica HOM05D003709 ORTHO05D004364 4.8e-07 58.2 43 55.8
Mapoly0009s0017 Marchantia polymorpha HOM05D003709 ORTHO05D004364 4.8e-07 58.2 74 48.6
TAR636G0224 Trochodendron aralioides HOM05D003709 ORTHO05D004364 4.8e-07 58.2 60 46.7
Haze_10129 Corylus avellana HOM05D003709 ORTHO05D004364 1.1e-06 57.0 32 75.0
Gohir.A09G000259 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.1e-06 57.0 31 87.1
MD07G1268900 Malus domestica HOM05D003709 ORTHO05D004364 1.1e-06 57.0 43 58.1
Lalb_Chr25g0288201 Lupinus albus HOM05D003709 ORTHO05D004364 1.4e-06 56.6 32 75.0
Manes.09G051450 Manihot esculenta HOM05D003709 ORTHO05D004364 1.4e-06 56.6 65 49.2
Sabra16G0077300 Salix brachista HOM05D003709 ORTHO05D004364 1.4e-06 56.6 48 56.2
C03p03020 Brassica napus HOM05D003709 ORTHO05D004364 2.4e-06 55.8 54 59.3
Gohir.A11G282813 Gossypium hirsutum HOM05D003709 ORTHO05D004364 4.0e-06 55.1 34 82.4
arahy.Tifrunner.gnm1.ann1.PZI97L Arachis hypogaea HOM05D003709 ORTHO05D004364 6.9e-06 54.3 32 75.0


User provided reference genes

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