Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.1e-101 373.2 181 100.0
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.1e-101 373.2 181 100.0
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.0e-83 313.5 168 86.9
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 1.8e-83 312.8 181 80.7
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 5.1e-83 311.2 179 82.7
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 1.5e-82 309.7 177 80.8
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 1.8e-80 302.8 166 81.3
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 1.7e-78 296.2 166 83.1
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.7e-78 296.2 166 80.7
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 5.0e-78 294.7 178 75.3
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 6.5e-78 294.3 170 78.2
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 8.5e-78 293.9 169 80.5
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.4e-77 293.1 167 80.2
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.4e-77 293.1 167 80.2
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.4e-77 293.1 166 79.5
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 1.9e-77 292.7 166 80.1
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 1.9e-77 292.7 167 79.0
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 1.9e-77 292.7 163 82.8
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 1.9e-77 292.7 170 79.4
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 2.5e-77 292.4 166 78.9
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 4.2e-77 291.6 167 77.2
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 5.5e-77 291.2 156 87.8
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 7.2e-77 290.8 166 80.7
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 7.2e-77 290.8 170 78.8
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 9.4e-77 290.4 166 80.7
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 1.2e-76 290.0 166 78.3
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 1.6e-76 289.7 170 78.8
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 1.6e-76 289.7 171 76.0
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 2.1e-76 289.3 167 77.8
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 3.6e-76 288.5 166 80.7
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 3.6e-76 288.5 166 80.7
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 3.6e-76 288.5 166 78.9
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 4.7e-76 288.1 174 77.6
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 4.7e-76 288.1 167 79.0
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 4.7e-76 288.1 166 78.9
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 6.1e-76 287.7 166 80.1
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 7.9e-76 287.3 172 77.3
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 7.9e-76 287.3 178 75.8
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 7.9e-76 287.3 167 79.0
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 7.9e-76 287.3 164 78.7
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 1.4e-75 286.6 172 76.7
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.4e-75 286.6 167 76.6
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.8e-75 286.2 167 77.2
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 2.3e-75 285.8 166 76.5
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 2.3e-75 285.8 167 76.0
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 3.0e-75 285.4 171 74.3
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 3.0e-75 285.4 172 76.7
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 3.9e-75 285.0 172 76.7
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 5.1e-75 284.6 168 75.0
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 5.1e-75 284.6 167 76.6
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 6.7e-75 284.3 166 78.9
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 6.7e-75 284.3 166 78.9
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 6.7e-75 284.3 166 77.7
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 6.7e-75 284.3 167 77.8
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 8.8e-75 283.9 166 78.9
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 8.8e-75 283.9 166 76.5
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 8.8e-75 283.9 166 78.3
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 1.1e-74 283.5 168 77.4
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 1.5e-74 283.1 166 78.3
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 1.5e-74 283.1 166 76.5
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 1.5e-74 283.1 167 79.0
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.0e-74 282.7 172 76.2
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 2.0e-74 282.7 172 75.0
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 2.6e-74 282.3 166 77.7
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 2.6e-74 282.3 166 77.1
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 2.6e-74 282.3 167 77.8
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 4.4e-74 281.6 180 73.9
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 4.4e-74 281.6 168 75.6
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 4.4e-74 281.6 168 75.6
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 4.4e-74 281.6 167 77.2
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 5.7e-74 281.2 166 76.5
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 7.4e-74 280.8 167 78.4
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 9.7e-74 280.4 167 77.2
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 1.3e-73 280.0 166 76.5
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 1.3e-73 280.0 166 77.1
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.7e-73 279.6 168 73.8
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 1.7e-73 279.6 167 76.6
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 2.2e-73 279.3 167 74.9
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.8e-73 278.9 166 76.5
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 3.7e-73 278.5 166 75.9
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 6.3e-73 277.7 164 78.0
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 6.3e-73 277.7 167 74.3
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 8.2e-73 277.3 166 75.3
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 1.1e-72 276.9 166 74.7
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 1.1e-72 276.9 171 72.5
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.1e-72 276.9 164 78.0
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 1.4e-72 276.6 167 76.0
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 1.8e-72 276.2 169 74.6
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.8e-72 276.2 167 76.6
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 2.4e-72 275.8 169 74.6
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 2.4e-72 275.8 169 74.6
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 4.1e-72 275.0 157 79.6
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 4.1e-72 275.0 167 76.0
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 4.1e-72 275.0 173 74.0
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 7.0e-72 274.2 169 74.0
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 1.2e-71 273.5 166 75.9
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 1.2e-71 273.5 156 81.4
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 1.2e-71 273.5 166 71.7
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 1.2e-71 273.5 176 73.9
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 1.5e-71 273.1 166 75.3
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.5e-71 273.1 199 66.3
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.5e-71 273.1 167 75.4
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 1.5e-71 273.1 166 74.1
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 2.0e-71 272.7 167 73.7
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 2.6e-71 272.3 168 72.0
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 2.6e-71 272.3 168 73.8
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 3.5e-71 271.9 170 70.6
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 3.5e-71 271.9 168 72.0
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 4.5e-71 271.6 167 74.3
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 4.5e-71 271.6 167 74.3
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 4.5e-71 271.6 167 74.9
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 5.9e-71 271.2 166 74.7
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 1.0e-70 270.4 166 72.3
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 3.8e-70 268.5 166 72.9
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.9e-69 266.2 166 71.7
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 3.2e-69 265.4 167 72.5
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 1.8e-67 259.6 167 68.9
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.1e-66 256.9 227 56.8
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 2.6e-66 255.8 167 68.3
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 5.7e-66 254.6 171 68.4
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 9.7e-66 253.8 150 78.7
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 4.8e-65 251.5 167 65.9
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 4.1e-64 248.4 167 67.1
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 2.0e-63 246.1 166 66.9
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.3e-62 243.4 163 66.9
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.7e-62 243.0 177 66.7
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 3.2e-61 238.8 168 67.3
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 1.8e-59 233.0 168 61.3
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 2.3e-59 232.6 173 62.4
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 6.7e-59 231.1 163 63.2
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 3.7e-57 225.3 167 60.5
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 4.8e-57 224.9 167 62.9
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 7.0e-56 221.1 163 61.3
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 7.0e-56 221.1 167 61.1
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 8.5e-54 214.2 168 56.0
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 6.3e-49 198.0 107 82.2
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 1.1e-45 187.2 170 52.4
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 4.2e-45 185.3 109 77.1
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 1.2e-44 183.7 123 71.5
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 3.6e-44 182.2 110 72.7
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 4.4e-42 175.3 106 76.4
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 1.4e-40 170.2 99 76.8
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 4.1e-40 168.7 167 52.7
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 5.4e-40 168.3 100 74.0
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 1.3e-38 163.7 100 73.0
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.7e-38 163.3 108 69.4
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 3.6e-36 155.6 85 82.4
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 1.4e-35 153.7 106 64.2
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 1.4e-35 153.7 106 64.2
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 3.1e-35 152.5 170 50.6
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 6.8e-35 151.4 103 65.0
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 1.6e-31 140.2 171 46.8
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 1.8e-27 126.7 157 39.5
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 2.0e-26 123.2 72 75.0
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 8.3e-25 117.9 137 51.1
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 4.1e-24 115.5 123 49.6
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 2.8e-20 102.8 62 74.2
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.1e-19 100.9 63 69.8
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 4.4e-18 95.5 188 27.7
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 4.1e-16 89.0 79 54.4
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.0e-14 84.3 60 60.0
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 4.3e-13 79.0 60 58.3
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 3.6e-12 75.9 61 60.7
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 2.2e-09 66.6 35 82.9
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.4e-08 63.9 48 62.5


User provided reference genes

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