Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.4e-293 1010.0 500 100.0
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.4e-285 983.0 510 96.5
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.4e-279 964.9 510 95.3
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.9e-279 963.4 510 95.1
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.9e-277 957.2 510 94.7
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.6e-267 925.6 510 92.2
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.7e-266 919.8 510 91.8
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.3e-263 910.6 510 90.8
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.3e-261 906.0 500 91.6
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 7.2e-236 820.5 505 82.4
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.2e-234 814.3 513 84.0
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 6.5e-221 770.8 513 78.0
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.1e-219 765.8 401 95.8
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 5.0e-213 744.6 508 76.6
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 1.0e-197 693.7 511 72.0
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 8.6e-197 690.6 514 71.4
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 1.2e-195 686.8 513 70.8
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 8.9e-194 680.6 511 68.7
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 9.2e-191 670.6 511 70.5
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 1.9e-188 662.9 515 68.5
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 1.2e-185 653.7 510 69.6
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 1.2e-185 653.7 510 69.6
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 2.9e-184 649.0 505 68.9
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 2.3e-181 639.4 511 66.3
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 1.1e-180 637.1 508 65.2
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 2.9e-176 622.5 513 64.3
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 4.3e-172 608.6 511 64.2
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 1.5e-169 600.1 511 65.4
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 1.6e-166 590.1 513 63.5
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 5.1e-165 585.1 510 62.2
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.3e-164 582.4 514 64.0
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.3e-164 582.4 514 64.0
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.3e-164 582.4 514 64.0
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.3e-164 582.4 514 64.0
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.3e-164 582.4 514 64.0
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 2.1e-163 579.7 516 60.7
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.8e-163 578.6 453 69.1
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 6.2e-163 578.2 516 60.7
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 1.1e-162 577.4 516 60.7
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 1.1e-162 577.4 513 61.2
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 2.4e-162 576.2 444 68.9
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 7.6e-161 571.2 516 60.5
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 1.3e-160 570.5 450 67.6
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 1.7e-160 570.1 513 61.6
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-159 567.0 510 62.4
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 2.5e-156 556.2 424 70.5
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 1.2e-153 547.4 515 59.8
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 7.6e-153 544.7 500 61.6
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.2e-151 539.3 429 68.3
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 3.5e-150 535.8 513 57.3
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 1.5e-145 520.4 476 60.3
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 7.6e-145 518.1 507 57.0
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 2.3e-141 506.5 506 56.5
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 3.0e-133 479.6 340 72.4
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 1.2e-129 467.6 487 56.3
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.7e-123 446.0 500 54.0
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 3.5e-121 439.5 402 60.0
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 5.9e-121 438.7 398 60.8
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.6e-118 430.6 456 54.8
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.7e-113 411.8 300 74.3
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 3.2e-111 406.4 360 65.0
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 2.2e-107 393.7 303 69.6
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 2.2e-104 383.6 470 50.4
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.2e-103 379.4 292 68.2
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 9.8e-100 368.2 437 53.5
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 2.4e-98 363.6 312 62.8
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 3.1e-98 363.2 339 59.9
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 5.7e-92 342.4 230 73.5
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 9.5e-79 298.5 286 61.5
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.2e-70 271.6 272 54.8
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 1.2e-70 271.6 272 54.8
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.8e-70 270.4 183 74.3
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 7.6e-68 262.3 213 60.6
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 7.6e-68 262.3 213 60.6
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 7.6e-68 262.3 213 60.6
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 7.6e-68 262.3 213 60.6
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 7.6e-68 262.3 213 60.6
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.4e-66 257.3 271 55.0
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.5e-65 253.4 198 69.2
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 8.1e-62 242.3 327 45.3
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 5.2e-61 239.6 308 48.4
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.2e-60 238.4 167 72.5
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 4.9e-59 233.0 224 60.7
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 1.9e-55 221.1 156 71.8
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 4.3e-55 219.9 195 64.6
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 1.7e-51 208.0 156 68.6
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 2.9e-51 207.2 143 71.3
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 2.1e-49 201.1 222 53.2
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 6.6e-48 196.1 142 69.7
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 4.8e-46 189.9 373 39.4
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 4.8e-46 189.9 130 76.9
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 8.1e-46 189.1 226 46.9
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 2.0e-44 184.5 122 76.2
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.3e-43 181.8 137 73.0
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.3e-43 181.8 174 60.9
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 7.1e-42 176.0 136 63.2
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 7.4e-39 166.0 121 73.6
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 1.1e-37 162.2 95 82.1
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.2e-36 158.7 134 67.9
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 4.5e-36 156.8 113 74.3
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.7e-35 154.8 159 57.2
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 8.4e-35 152.5 121 66.9
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 1.1e-34 152.1 122 63.9
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 2.5e-34 151.0 191 46.1
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 5.5e-34 149.8 138 68.1
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 7.1e-34 149.4 141 59.6
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 1.2e-33 148.7 176 51.1
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 1.5e-31 141.7 85 78.8
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 3.3e-31 140.6 135 64.4
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 4.3e-31 140.2 114 58.8
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 6.3e-30 136.3 116 56.0
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 8.2e-30 136.0 102 60.8
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 5.3e-29 133.3 107 62.6
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 1.5e-28 131.7 174 46.0
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 2.2e-27 127.9 106 62.3
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 3.8e-27 127.1 144 56.2
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.9e-26 124.8 123 61.8
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.5e-26 124.4 80 76.2
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 4.6e-25 120.2 98 64.3
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 6.1e-25 119.8 110 60.9
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.1e-24 116.7 82 67.1
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 5.1e-24 116.7 115 51.3
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 5.7e-23 113.2 74 68.9
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 2.8e-22 110.9 82 64.6
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 9.0e-21 105.9 86 67.4
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 7.7e-20 102.8 88 58.0
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.0e-19 102.4 399 27.1
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 5.0e-19 100.1 84 71.4
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.1e-17 94.7 82 62.2
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 1.0e-16 92.4 383 27.4
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 3.9e-16 90.5 60 70.0
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 8.8e-16 89.4 66 65.2
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 4.8e-14 83.6 65 67.7
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 2.4e-13 81.3 84 52.4
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 5.9e-12 76.6 82 50.0
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 7.7e-12 76.3 46 69.6
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 1.7e-11 75.1 87 51.7
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 3.8e-11 73.9 62 56.5
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 6.5e-11 73.2 73 54.8
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 4.2e-10 70.5 56 64.3
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 4.2e-10 70.5 56 64.3
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 9.4e-10 69.3 54 72.2
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 2.7e-09 67.8 42 73.8
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 2.7e-09 67.8 54 63.0
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 4.7e-09 67.0 56 60.7
TPR.G16230 Trifolium pratense HOM05D004473 ORTHO05D005652 1.0e-08 65.9 78 50.0
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 1.8e-08 65.1 49 53.1
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 2.0e-07 61.6 56 57.1
TPR.G7920 Trifolium pratense HOM05D004473 ORTHO05D005652 7.4e-07 59.7 64 60.9
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 9.7e-07 59.3 50 56.0
CSS0010292 Camellia sinensis var. sinensis HOM05D004473 ORTHO05D005652 2.2e-06 58.2 34 76.5
Lalb_Chr07g0192631 Lupinus albus HOM05D004473 ORTHO05D005652 4.8e-06 57.0 54 50.0
Gorai.006G008300 Gossypium raimondii HOM05D004473 ORTHO05D005652 6.3e-06 56.6 95 37.9


User provided reference genes

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