Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27723 Selenicereus undatus HOM05D007573 ORTHO05D009938 1.9e-53 212.2 106 100.0
Hund27736 Selenicereus undatus HOM05D007573 ORTHO05D009938 1.9e-53 212.2 106 100.0
EL10Ac3g05359 Beta vulgaris HOM05D007573 ORTHO05D009938 1.2e-15 86.7 55 74.5
Dinv04316 Davidia involucrata HOM05D007573 ORTHO05D009938 3.5e-15 85.1 58 72.4
Lj3g0024326 Lotus japonicus HOM05D007573 ORTHO05D009938 3.5e-15 85.1 54 74.1
Glyma.06G246700 Glycine max HOM05D007573 ORTHO05D009938 6.6e-14 80.9 57 64.9
TWI39G0607 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 6.6e-14 80.9 58 62.1
Cpa.g.sc80.44 Carica papaya HOM05D007573 ORTHO05D009938 8.6e-14 80.5 53 73.6
TWI77G0001 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 8.6e-14 80.5 60 63.3
Atru.chr2.2713 Acer truncatum HOM05D007573 ORTHO05D009938 1.5e-13 79.7 55 65.5
Thecc.07G080300 Theobroma cacao HOM05D007573 ORTHO05D009938 1.5e-13 79.7 51 76.5
Hma1.2p1_0540F.1_g174720 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 1.9e-13 79.3 59 64.4
Hma1.2p1_0540F.1_g174725 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 1.9e-13 79.3 59 64.4
Manes.03G112266 Manihot esculenta HOM05D007573 ORTHO05D009938 2.5e-13 79.0 58 67.2
COL.COLO4_09423 Corchorus olitorius HOM05D007573 ORTHO05D009938 3.3e-13 78.6 57 66.7
Nitab4.5_0003769g0010 Nicotiana tabacum HOM05D007573 ORTHO05D009938 4.3e-13 78.2 55 70.9
Glyma.12G150700 Glycine max HOM05D007573 ORTHO05D009938 5.6e-13 77.8 70 58.6
Sed0027924 Sechium edule HOM05D007573 ORTHO05D009938 5.6e-13 77.8 51 70.6
VMungo1383G0060 Vigna mungo HOM05D007573 ORTHO05D009938 5.6e-13 77.8 56 66.1
Cc06_g21640 Coffea canephora HOM05D007573 ORTHO05D009938 9.5e-13 77.0 58 65.5
Nitab4.5_0003688g0030 Nicotiana tabacum HOM05D007573 ORTHO05D009938 9.5e-13 77.0 55 69.1
Potri.001G402000 Populus trichocarpa HOM05D007573 ORTHO05D009938 9.5e-13 77.0 58 63.8
PGR031G1039 Punica granatum HOM05D007573 ORTHO05D009938 9.5e-13 77.0 63 58.7
Psat4g143240 Pisum sativum HOM05D007573 ORTHO05D009938 1.6e-12 76.3 56 62.5
RcHm_v2.0_Chr5g0034341 Rosa chinensis HOM05D007573 ORTHO05D009938 1.6e-12 76.3 59 61.0
ClCG10G006860 Citrullus lanatus HOM05D007573 ORTHO05D009938 2.1e-12 75.9 58 67.2
Dinv08308 Davidia involucrata HOM05D007573 ORTHO05D009938 2.1e-12 75.9 56 69.6
Duzib213G0732 Durio zibethinus HOM05D007573 ORTHO05D009938 2.8e-12 75.5 52 69.2
Gohir.A01G065200 Gossypium hirsutum HOM05D007573 ORTHO05D009938 2.8e-12 75.5 51 70.6
Haze_09458 Corylus avellana HOM05D007573 ORTHO05D009938 3.6e-12 75.1 56 62.5
FAN18G1355 Fragaria x ananassa HOM05D007573 ORTHO05D009938 3.6e-12 75.1 63 61.9
FAN18G3111 Fragaria x ananassa HOM05D007573 ORTHO05D009938 3.6e-12 75.1 63 61.9
Lalb_Chr19g0134301 Lupinus albus HOM05D007573 ORTHO05D009938 3.6e-12 75.1 57 63.2
Nn8g41073 Nelumbo nucifera HOM05D007573 ORTHO05D009938 3.6e-12 75.1 54 68.5
FAN04G1519 Fragaria x ananassa HOM05D007573 ORTHO05D009938 4.7e-12 74.7 57 64.9
Peaxi162Scf00069g01326 Petunia axillaris HOM05D007573 ORTHO05D009938 6.2e-12 74.3 50 72.0
Medtr8g043400 Medicago truncatula HOM05D007573 ORTHO05D009938 8.1e-12 73.9 58 60.3
Solyc07g063250.3 Solanum lycopersicum HOM05D007573 ORTHO05D009938 1.1e-11 73.6 55 67.3
AL3G27940 Arabidopsis lyrata HOM05D007573 ORTHO05D009938 1.4e-11 73.2 52 71.2
AT3G15395 Arabidopsis thaliana HOM05D007573 ORTHO05D009938 1.4e-11 73.2 52 71.2
CANSAT54G1030 Cannabis sativa HOM05D007573 ORTHO05D009938 1.4e-11 73.2 56 60.7
CiPaw.12G120200 Carya illinoinensis HOM05D007573 ORTHO05D009938 1.4e-11 73.2 51 66.7
Gorai.002G072400 Gossypium raimondii HOM05D007573 ORTHO05D009938 1.4e-11 73.2 49 71.4
Phvul.011G213100 Phaseolus vulgaris HOM05D007573 ORTHO05D009938 1.4e-11 73.2 56 62.5
CSS0004701 Camellia sinensis var. sinensis HOM05D007573 ORTHO05D009938 1.8e-11 72.8 56 66.1
Aa31LG8G2630 Aethionema arabicum HOM05D007573 ORTHO05D009938 2.3e-11 72.4 52 69.2
Carub.0003s1512 Capsella rubella HOM05D007573 ORTHO05D009938 2.3e-11 72.4 52 71.2
CARHR090450 Cardamine hirsuta HOM05D007573 ORTHO05D009938 2.3e-11 72.4 52 69.2
CsaV3_3G006210 Cucumis sativus L. HOM05D007573 ORTHO05D009938 2.3e-11 72.4 51 64.7
MD00G1089500 Malus domestica HOM05D007573 ORTHO05D009938 2.3e-11 72.4 55 61.8
Prupe.4G184300 Prunus persica HOM05D007573 ORTHO05D009938 2.3e-11 72.4 59 61.0
TAR626G0043 Trochodendron aralioides HOM05D007573 ORTHO05D009938 2.3e-11 72.4 56 60.7
CiPaw.08G146300 Carya illinoinensis HOM05D007573 ORTHO05D009938 3.1e-11 72.0 51 66.7
Ciclev10010140m.g Citrus clementina HOM05D007573 ORTHO05D009938 3.1e-11 72.0 52 67.3
Thhalv10021902m.g Eutrema salsugineum HOM05D007573 ORTHO05D009938 3.1e-11 72.0 52 69.2
HPP92_024073 Vanilla planifolia HOM05D007573 ORTHO05D009938 3.1e-11 72.0 54 63.0
AL230U10020 Arabidopsis lyrata HOM05D007573 ORTHO05D013670 4.0e-11 71.6 55 67.3
MSTRG.15220 Avicennia marina HOM05D007573 ORTHO05D009938 4.0e-11 71.6 65 56.9
MELO3C016521.2 Cucumis melo HOM05D007573 ORTHO05D009938 5.2e-11 71.2 51 62.7
THA.LOC104810481 Tarenaya hassleriana HOM05D007573 ORTHO05D009938 5.2e-11 71.2 52 65.4
BcaB06g29571 Brassica carinata HOM05D007573 ORTHO05D009938 6.8e-11 70.9 59 59.3
A03p39300 Brassica napus HOM05D007573 ORTHO05D009938 6.8e-11 70.9 52 65.4
C03p47670 Brassica napus HOM05D007573 ORTHO05D009938 6.8e-11 70.9 52 65.4
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 6.8e-11 70.9 52 65.4
Lalb_Chr03g0030571 Lupinus albus HOM05D007573 ORTHO05D009938 6.8e-11 70.9 55 61.8
Lsat_1_v5_gn_7_105220 Lactuca sativa HOM05D007573 ORTHO05D009938 8.9e-11 70.5 41 75.6
C05p51770 Brassica napus HOM05D007573 ORTHO05D009938 2.6e-10 68.9 50 66.0
BolC5t33863H Brassica oleracea HOM05D007573 ORTHO05D009938 2.6e-10 68.9 50 66.0
ATR0751G258 Amborella trichopoda HOM05D007573 ORTHO05D009938 7.6e-10 67.4 63 54.0
PSO017G6785 Papaver somniferum HOM05D007573 ORTHO05D009938 7.6e-10 67.4 58 51.7
Os02g0197400 Oryza sativa ssp. japonica HOM05D007573 ORTHO05D009938 1.3e-09 66.6 55 52.7
BcaC01g03875 Brassica carinata HOM05D007573 ORTHO05D009938 1.1e-08 63.5 60 56.7
Aqoxy7G03752 Aquilegia oxysepala HOM05D007573 ORTHO05D009938 1.9e-08 62.8 57 59.6
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 3.2e-08 62.0 50 60.0
CDE03G0215 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 4.1e-08 61.6 43 65.1
Actinidia09676 Actinidia chinensis HOM05D007573 ORTHO05D009938 7.1e-08 60.8 49 65.3
Migut.M00851 Erythranthe guttata HOM05D007573 ORTHO05D009938 7.1e-08 60.8 52 55.8
MBI15_g18737_MAGBIO Magnolia biondii HOM05D007573 ORTHO05D009938 1.6e-07 59.7 50 56.0
MD03G1224700 Malus domestica HOM05D007573 ORTHO05D009938 2.7e-07 58.9 49 61.2
Potri.006G225232 Populus trichocarpa HOM05D007573 ORTHO05D009938 6.0e-07 57.8 61 57.4


User provided reference genes

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