Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 7.4e-189 663.7 331 100.0
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.5e-170 601.3 301 100.0
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 4.9e-55 219.2 160 68.8
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 4.5e-53 212.6 163 67.5
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.0e-52 211.5 163 66.9
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.7e-44 184.1 156 62.2
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 5.6e-43 179.1 155 58.7
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 8.0e-42 175.3 156 59.0
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 1.0e-41 174.9 164 57.3
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 3.1e-41 173.3 156 57.7
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 1.2e-40 171.4 156 57.7
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 1.2e-40 171.4 173 52.6
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 1.5e-40 171.0 173 53.8
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 2.0e-40 170.6 156 56.4
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 2.6e-40 170.2 158 57.6
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 9.8e-40 168.3 156 55.8
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.7e-39 167.5 173 53.2
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 2.2e-39 167.2 156 55.1
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 2.9e-39 166.8 176 51.7
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 3.7e-39 166.4 177 51.4
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 4.9e-39 166.0 177 52.5
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 6.4e-39 165.6 163 54.6
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 1.1e-38 164.9 160 56.2
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 1.1e-38 164.9 160 56.2
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 1.1e-38 164.9 174 48.3
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 1.4e-38 164.5 175 49.7
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.4e-38 164.5 163 54.0
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 1.4e-38 164.5 174 50.0
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-38 164.5 163 52.8
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 1.9e-38 164.1 160 55.6
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.9e-38 164.1 160 55.0
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 2.4e-38 163.7 156 55.1
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 2.4e-38 163.7 177 49.2
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 3.2e-38 163.3 168 53.0
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 4.1e-38 162.9 160 55.0
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 4.1e-38 162.9 177 49.7
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 5.4e-38 162.5 180 50.6
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 7.0e-38 162.2 163 50.9
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.6e-37 161.0 174 49.4
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 1.6e-37 161.0 176 51.1
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 1.6e-37 161.0 173 50.9
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 1.6e-37 161.0 173 51.4
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 2.0e-37 160.6 173 50.9
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 2.7e-37 160.2 178 52.8
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 3.5e-37 159.8 175 50.3
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 3.5e-37 159.8 155 54.2
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 4.6e-37 159.5 177 47.5
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 4.6e-37 159.5 153 55.6
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 6.0e-37 159.1 158 53.8
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 6.0e-37 159.1 163 53.4
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 7.8e-37 158.7 160 54.4
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 7.8e-37 158.7 157 52.2
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 7.8e-37 158.7 163 52.8
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 1.0e-36 158.3 173 50.3
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.0e-36 158.3 173 49.1
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 1.3e-36 157.9 178 50.6
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.7e-36 157.5 173 49.1
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 1.7e-36 157.5 173 49.1
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 2.3e-36 157.1 173 49.1
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 2.3e-36 157.1 179 51.4
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 2.3e-36 157.1 174 51.1
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 3.0e-36 156.8 176 51.1
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 3.0e-36 156.8 173 48.6
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 3.0e-36 156.8 178 50.0
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 3.9e-36 156.4 153 56.2
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 3.9e-36 156.4 152 56.6
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 6.6e-36 155.6 169 52.1
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 1.1e-35 154.8 166 53.6
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.5e-35 154.5 152 56.6
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.9e-35 154.1 177 48.0
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 1.9e-35 154.1 161 50.3
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 2.5e-35 153.7 149 54.4
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 2.5e-35 153.7 149 54.4
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 3.3e-35 153.3 175 50.3
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 4.3e-35 152.9 156 55.1
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 4.3e-35 152.9 169 50.9
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 5.6e-35 152.5 158 51.9
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 7.3e-35 152.1 178 48.9
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.2e-34 151.4 153 53.6
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 1.2e-34 151.4 175 49.1
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 1.6e-34 151.0 178 47.2
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 2.1e-34 150.6 154 51.9
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 2.1e-34 150.6 152 55.9
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 3.6e-34 149.8 153 54.9
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 4.7e-34 149.4 195 44.6
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 1.1e-33 148.3 177 48.6
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 6.8e-33 145.6 219 40.6
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 1.2e-32 144.8 176 47.7
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 1.5e-32 144.4 152 50.7
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 9.8e-32 141.7 149 51.7
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.7e-31 141.0 178 44.9
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 1.1e-30 138.3 160 46.9
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 5.4e-30 136.0 156 47.4
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 2.3e-28 130.6 144 51.4
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 5.1e-28 129.4 179 46.4
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 6.6e-28 129.0 178 45.5
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.6e-28 129.0 162 46.9
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 8.6e-28 128.6 157 47.8
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 3.3e-27 126.7 140 49.3
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 1.2e-26 124.8 176 40.3
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 6.8e-25 119.0 157 45.2
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 3.8e-23 113.2 138 46.4
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 8.4e-23 112.1 136 47.1
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.1e-22 109.8 77 66.2
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.4e-22 109.4 102 54.9
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 7.1e-22 109.0 76 67.1
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 1.2e-21 108.2 187 38.5
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 1.1e-19 101.7 116 50.9
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 2.5e-19 100.5 160 42.5
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 5.6e-19 99.4 110 49.1
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-18 97.4 106 50.0
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 8.4e-15 85.5 150 38.7
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 1.5e-11 74.7 156 36.5
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-08 63.5 125 36.0
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.3e-07 61.6 48 58.3
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 1.3e-07 61.6 82 45.1
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 3.8e-07 60.1 80 46.2
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 8.4e-07 58.9 79 46.8
C06p19910 Brassica napus HOM05D016195 ORTHO05D033444 7.1e-06 55.8 64 42.2


User provided reference genes

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