Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.5e-95 351.3 182 100.0
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.3e-86 323.2 182 92.3
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 4.8e-81 304.7 182 87.9
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 4.8e-81 304.7 185 87.6
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 6.3e-81 304.3 192 85.4
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 1.8e-80 302.8 185 87.6
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 3.1e-80 302.0 170 92.9
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 8.5e-78 293.9 192 81.8
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 1.1e-77 293.5 190 83.7
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 7.2e-77 290.8 185 84.3
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 3.6e-76 288.5 185 83.2
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 1.0e-75 287.0 185 82.2
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 3.0e-75 285.4 195 79.5
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 3.0e-75 285.4 195 79.5
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 8.8e-75 283.9 181 83.4
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 1.3e-73 280.0 196 78.1
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 1.3e-73 280.0 186 82.3
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 1.3e-73 280.0 188 80.3
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 6.3e-73 277.7 190 79.5
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 6.3e-73 277.7 190 79.5
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 3.1e-72 275.4 197 77.7
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.1e-72 275.4 182 82.4
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 2.7e-71 272.3 188 79.3
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 3.5e-71 271.9 194 77.3
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 1.0e-70 270.4 198 77.3
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 6.5e-70 267.7 229 67.2
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 1.3e-65 253.4 156 86.5
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 1.3e-65 253.4 156 86.5
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 1.3e-65 253.4 156 86.5
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 1.3e-65 253.4 156 86.5
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 1.3e-65 253.4 156 86.5
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 2.2e-65 252.7 186 76.9
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-64 250.0 132 100.0
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-64 250.0 132 100.0
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-64 250.0 132 100.0
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 1.2e-63 246.9 182 75.3
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 3.5e-63 245.4 189 74.6
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.2e-60 236.9 182 73.1
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 8.3e-57 224.2 137 87.6
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 1.4e-56 223.4 131 90.8
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 1.4e-56 223.4 131 90.8
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 2.3e-54 216.1 137 83.9
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 5.0e-54 214.9 132 88.6
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 3.1e-51 205.7 132 84.1
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 8.9e-51 204.1 139 81.3
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 5.8e-50 201.4 169 68.0
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.3e-49 200.3 129 83.7
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.7e-47 192.6 131 80.9
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 6.0e-47 191.4 157 70.7
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 7.8e-47 191.0 132 79.5
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 1.7e-46 189.9 135 77.8
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 3.9e-46 188.7 141 73.8
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 8.6e-46 187.6 133 76.7
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 3.3e-45 185.7 128 80.5
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.6e-45 184.9 182 61.5
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 7.3e-45 184.5 119 84.9
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 6.2e-44 181.4 119 82.4
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 1.4e-43 180.3 129 76.7
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 1.2e-42 177.2 124 76.6
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 1.5e-42 176.8 157 65.0
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 3.4e-42 175.6 118 80.5
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 3.4e-42 175.6 127 72.4
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 4.4e-42 175.3 113 84.1
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 1.1e-40 170.6 115 80.9
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 1.1e-40 170.6 115 80.9
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 1.1e-40 170.6 115 80.9
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 3.2e-40 169.1 113 80.5
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.2e-40 169.1 152 65.1
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.6e-39 165.2 106 84.0
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.0e-38 164.1 112 80.4
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 7.3e-37 157.9 133 68.4
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 1.2e-36 157.1 144 65.3
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 2.1e-36 156.4 122 70.5
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 2.1e-36 156.4 108 78.7
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 8.1e-36 154.5 130 66.9
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 8.1e-36 154.5 98 83.7
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 8.1e-36 154.5 115 77.4
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.4e-35 153.7 199 50.8
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 4.0e-35 152.1 96 83.3
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 5.8e-34 148.3 105 78.1
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 5.8e-34 148.3 137 60.6
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 5.8e-34 148.3 137 60.6
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.7e-33 146.7 90 85.6
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 3.8e-33 145.6 92 82.6
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 3.8e-33 145.6 156 60.3
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 1.4e-32 143.7 95 84.2
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 1.4e-32 143.7 95 84.2
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 1.4e-32 143.7 90 86.7
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 1.3e-30 137.1 135 60.7
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 2.5e-29 132.9 95 74.7
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.3e-29 132.5 101 71.3
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.2e-28 130.6 116 64.7
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 7.6e-26 121.3 84 77.4
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 2.9e-25 119.4 73 84.9
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 1.1e-24 117.5 90 72.2
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.2e-23 114.0 77 80.5
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.5e-23 112.5 76 80.3
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 6.0e-23 111.7 79 77.2
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 3.0e-22 109.4 104 63.5
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.6e-22 108.2 72 83.3
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 8.7e-22 107.8 188 36.7
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.3e-21 105.9 76 75.0
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.2e-20 101.7 71 80.3
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 2.4e-19 99.8 71 76.1
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 1.2e-18 97.4 49 93.9
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.5e-18 97.1 68 76.5
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 2.6e-18 96.3 49 93.9
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 7.6e-18 94.7 66 75.8
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 7.6e-18 94.7 61 78.7
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 9.9e-18 94.4 50 90.0
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.3e-17 94.0 67 76.1
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 2.2e-17 93.2 54 87.0
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 2.2e-17 93.2 61 82.0
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.2e-17 93.2 50 88.0
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.2e-17 93.2 72 72.2
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 3.8e-17 92.4 74 71.6
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.4e-16 90.5 50 88.0
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 1.9e-16 90.1 71 71.8
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 5.4e-16 88.6 92 57.6
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 1.2e-15 87.4 46 89.1
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 1.6e-15 87.0 52 80.8
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 2.1e-15 86.7 54 85.2
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 4.6e-15 85.5 64 70.3
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 1.8e-14 83.6 48 83.3
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 3.0e-14 82.8 61 73.8
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.3e-13 79.0 51 82.4
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 3.6e-12 75.9 58 70.7
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 4.8e-12 75.5 52 73.1
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 8.1e-12 74.7 52 71.2
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.8e-11 73.6 48 79.2
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.6e-10 69.7 48 77.1
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 4.5e-10 68.9 41 80.5
Gorai.004G111300 Gossypium raimondii HOM05D000743 ORTHO05D000580 2.2e-09 66.6 83 51.8
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 2.2e-09 66.6 79 53.2
arahy.Tifrunner.gnm1.ann1.KLBW9T Arachis hypogaea HOM05D005015 ORTHO05D005696 1.4e-08 63.9 74 54.1
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 9.3e-08 61.2 40 82.5
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.2e-07 60.8 38 78.9
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.2e-07 60.8 38 78.9


User provided reference genes

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