Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27329 Selenicereus undatus HOM05D006557 ORTHO05D008177 0.0e+00 1157.1 575 100.0
EL10Ac1g00969 Beta vulgaris HOM05D006557 ORTHO05D008177 5.4e-219 764.6 573 68.2
AUR62033372 Chenopodium quinoa HOM05D006557 ORTHO05D008177 1.9e-211 739.6 578 65.7
Sc02g0002240 Simmondsia chinensis HOM05D006557 ORTHO05D008177 3.2e-211 738.8 593 64.1
Actinidia33449 Actinidia chinensis HOM05D006557 ORTHO05D008177 8.9e-206 720.7 594 61.1
GSVIVG01026363001 Vitis vinifera HOM05D006557 ORTHO05D008177 8.3e-204 714.1 601 62.6
CSS0001854 Camellia sinensis var. sinensis HOM05D006557 ORTHO05D008177 4.1e-203 711.8 588 61.9
CiPaw.01G052200 Carya illinoinensis HOM05D006557 ORTHO05D008177 2.1e-202 709.5 595 61.0
TAR375G0852 Trochodendron aralioides HOM05D006557 ORTHO05D008177 6.0e-202 708.0 605 61.5
Potri.014G077700 Populus trichocarpa HOM05D006557 ORTHO05D008177 5.1e-201 704.9 600 60.7
arahy.Tifrunner.gnm1.ann1.P0RXA9 Arachis hypogaea HOM05D006557 ORTHO05D008177 1.1e-200 703.7 585 61.0
Oeu058605.1 Olea europaea HOM05D006557 ORTHO05D008177 1.5e-200 703.4 595 60.5
Gohir.D07G150201 Gossypium hirsutum HOM05D006557 ORTHO05D008177 3.3e-200 702.2 598 58.9
Gorai.001G172000 Gossypium raimondii HOM05D006557 ORTHO05D008177 4.3e-200 701.8 598 58.9
Cfa004174 Carpinus fangiana HOM05D006557 ORTHO05D008177 1.6e-199 699.9 592 60.6
Gohir.A07G144300 Gossypium hirsutum HOM05D006557 ORTHO05D008177 3.6e-199 698.7 598 59.2
Nn6g34278 Nelumbo nucifera HOM05D006557 ORTHO05D008177 4.7e-199 698.4 597 60.3
FAN10G2465 Fragaria x ananassa HOM05D006557 ORTHO05D008177 8.1e-199 697.6 584 60.1
Peaxi162Scf00021g00314 Petunia axillaris HOM05D006557 ORTHO05D008177 8.1e-199 697.6 599 59.8
Glyma.18G228300 Glycine max HOM05D006557 ORTHO05D008177 1.4e-198 696.8 588 59.9
Thecc.01G369600 Theobroma cacao HOM05D006557 ORTHO05D008177 1.4e-198 696.8 600 59.7
CANSAT56G3931 Cannabis sativa HOM05D006557 ORTHO05D008177 2.4e-198 696.0 602 59.8
PGR042G0062 Punica granatum HOM05D006557 ORTHO05D008177 2.0e-197 693.0 599 59.1
PGSC0003DMG400000131 Solanum tuberosum HOM05D006557 ORTHO05D008177 2.0e-197 693.0 597 58.6
Glyma.09G263800 Glycine max HOM05D006557 ORTHO05D008177 7.6e-197 691.0 583 59.5
Phvul.008G069900 Phaseolus vulgaris HOM05D006557 ORTHO05D008177 7.6e-197 691.0 589 59.6
FvH4_7g12930 Fragaria vesca HOM05D006557 ORTHO05D008177 9.9e-197 690.6 591 59.4
Nitab4.5_0006706g0040 Nicotiana tabacum HOM05D006557 ORTHO05D008177 9.9e-197 690.6 628 56.8
Solyc01g091860.4 Solanum lycopersicum HOM05D006557 ORTHO05D008177 1.3e-196 690.3 592 59.5
QL08p050821 Quercus lobata HOM05D006557 ORTHO05D008177 1.7e-196 689.9 585 60.9
Manes.01G262900 Manihot esculenta HOM05D006557 ORTHO05D008177 2.2e-196 689.5 596 59.9
Prupe.2G153600 Prunus persica HOM05D006557 ORTHO05D008177 3.8e-196 688.7 603 59.5
RcHm_v2.0_Chr1g0352061 Rosa chinensis HOM05D006557 ORTHO05D008177 3.8e-196 688.7 597 60.6
Lsat_1_v5_gn_7_8181 Lactuca sativa HOM05D006557 ORTHO05D008177 4.9e-196 688.3 584 58.6
FAN06G2259 Fragaria x ananassa HOM05D006557 ORTHO05D008177 6.4e-196 688.0 601 58.9
Ciclev10019481m.g Citrus clementina HOM05D006557 ORTHO05D008177 8.4e-196 687.6 606 59.4
MBI04_g40842_MAGBIO Magnolia biondii HOM05D006557 ORTHO05D008177 1.1e-195 687.2 581 60.8
Aqoxy7G00469 Aquilegia oxysepala HOM05D006557 ORTHO05D008177 1.9e-195 686.4 585 60.3
Sopen01g037630 Solanum pennellii HOM05D006557 ORTHO05D008177 3.2e-195 685.6 593 58.9
FAN01G0615 Fragaria x ananassa HOM05D006557 ORTHO05D008177 7.1e-195 684.5 594 58.2
TWI23G0976 Tripterygium wilfordii HOM05D006557 ORTHO05D008177 7.1e-195 684.5 584 61.6
Medtr7g076590 Medicago truncatula HOM05D006557 ORTHO05D008177 9.3e-195 684.1 576 59.9
FAN10G0459 Fragaria x ananassa HOM05D006557 ORTHO05D008177 1.6e-194 683.3 570 60.5
Atru.chr5.390 Acer truncatum HOM05D006557 ORTHO05D008177 2.7e-194 682.6 601 59.7
Cc02_g37160 Coffea canephora HOM05D006557 ORTHO05D008177 2.7e-194 682.6 586 60.1
Lj1g0000530 Lotus japonicus HOM05D006557 ORTHO05D008177 2.7e-194 682.6 583 59.3
Nitab4.5_0009025g0010 Nicotiana tabacum HOM05D006557 ORTHO05D008177 7.8e-194 681.0 596 58.2
Atru.chr5.396 Acer truncatum HOM05D006557 ORTHO05D008177 3.0e-193 679.1 601 59.6
MSTRG.17229 Avicennia marina HOM05D006557 ORTHO05D008177 2.5e-192 676.0 590 59.7
HanXRQChr04g0121771 Helianthus annuus HOM05D006557 ORTHO05D008177 4.3e-192 675.2 586 59.0
Lalb_Chr01g0021061 Lupinus albus HOM05D006557 ORTHO05D008177 4.3e-192 675.2 592 57.6
Eucgr.E00220 Eucalyptus grandis HOM05D006557 ORTHO05D008177 1.8e-190 669.8 586 58.5
ECA236G4623 Erigeron canadensis HOM05D006557 ORTHO05D008177 1.4e-187 660.2 585 57.8
Sp1g00380 Schrenkiella parvula HOM05D006557 ORTHO05D008177 1.9e-187 659.8 577 59.4
Duzib133G0555 Durio zibethinus HOM05D006557 ORTHO05D008177 3.2e-187 659.1 597 57.3
CARHR000440 Cardamine hirsuta HOM05D006557 ORTHO05D008177 4.2e-187 658.7 579 59.9
Thhalv10007294m.g Eutrema salsugineum HOM05D006557 ORTHO05D008177 5.4e-187 658.3 577 59.4
TPR.G37774 Trifolium pratense HOM05D006557 ORTHO05D008177 1.6e-186 656.8 577 58.4
FAN03G1058 Fragaria x ananassa HOM05D006557 ORTHO05D008177 3.5e-186 655.6 654 53.7
Carub.0001s0032 Capsella rubella HOM05D006557 ORTHO05D008177 5.1e-185 651.7 575 58.4
Sed0001202 Sechium edule HOM05D006557 ORTHO05D008177 3.3e-184 649.0 593 57.2
AL1G10410 Arabidopsis lyrata HOM05D006557 ORTHO05D008177 5.6e-184 648.3 578 58.7
Dinv32417 Davidia involucrata HOM05D006557 ORTHO05D008177 5.6e-184 648.3 518 63.5
AUR62004285 Chenopodium quinoa HOM05D006557 ORTHO05D008177 1.3e-183 647.1 581 60.8
PSO478G0993 Papaver somniferum HOM05D006557 ORTHO05D008177 1.4e-182 643.7 587 56.2
ClCG01G015140 Citrullus lanatus HOM05D006557 ORTHO05D008177 6.9e-182 641.3 613 55.6
Migut.B01677 Erythranthe guttata HOM05D006557 ORTHO05D008177 1.2e-181 640.6 591 57.4
MELO3C024600.2 Cucumis melo HOM05D006557 ORTHO05D008177 2.0e-181 639.8 614 56.8
SalBow3G2355 Salvia bowleyana HOM05D006557 ORTHO05D008177 2.0e-181 639.8 585 57.4
DCAR_008582 Daucus carota HOM05D006557 ORTHO05D008177 5.8e-181 638.3 561 58.3
Aa31LG1G11240 Aethionema arabicum HOM05D006557 ORTHO05D008177 2.9e-180 636.0 628 54.6
Lj9A576T36 Lonicera japonica HOM05D006557 ORTHO05D008177 3.8e-180 635.6 519 62.2
C08p53930 Brassica napus HOM05D006557 ORTHO05D008177 3.2e-179 632.5 602 56.1
CsaV3_6G041250 Cucumis sativus L. HOM05D006557 ORTHO05D008177 3.2e-179 632.5 600 56.0
COL.COLO4_12633 Corchorus olitorius HOM05D006557 ORTHO05D008177 4.2e-179 632.1 540 59.4
BolC8t52906H Brassica oleracea HOM05D006557 ORTHO05D008177 1.2e-178 630.6 601 56.1
ATR0757G115 Amborella trichopoda HOM05D006557 ORTHO05D008177 6.2e-175 618.2 601 53.1
Rhsim01G0154800 Rhododendron simsii HOM05D006557 ORTHO05D008177 6.9e-174 614.8 643 53.0
BraA09t42268Z Brassica rapa HOM05D006557 ORTHO05D008177 2.0e-173 613.2 625 53.6
Psat3g112120 Pisum sativum HOM05D006557 ORTHO05D008177 6.5e-172 608.2 532 58.1
vmacro04846 Vaccinium macrocarpon HOM05D006557 ORTHO05D008177 7.2e-163 578.2 584 53.8
Os06g0127200 Oryza sativa ssp. japonica HOM05D006557 ORTHO05D008177 9.0e-158 561.2 581 51.5
Zm00001eb269430 Zea mays HOM05D006557 ORTHO05D008177 2.6e-157 559.7 591 51.4
arahy.Tifrunner.gnm1.ann1.1L2ERA Arachis hypogaea HOM05D006557 ORTHO05D008177 6.7e-153 545.0 474 58.2
HPP92_025368 Vanilla planifolia HOM05D006557 ORTHO05D008177 3.3e-152 542.7 576 51.2
AT1G01920 Arabidopsis thaliana HOM05D006557 ORTHO05D008177 9.4e-147 524.6 464 58.4
Dinv43750 Davidia involucrata HOM05D006557 ORTHO05D008177 5.2e-137 492.3 385 62.6
FAN06G3640 Fragaria x ananassa HOM05D006557 ORTHO05D008177 1.5e-136 490.7 710 41.7
CAN.G170.58 Capsicum annuum HOM05D006557 ORTHO05D008177 2.4e-134 483.4 422 58.1
unitig_8.g3814 Utricularia gibba HOM05D006557 ORTHO05D008177 2.9e-132 476.5 571 48.7
Haze_15235 Corylus avellana HOM05D006557 ORTHO05D008177 4.8e-127 459.1 422 57.1
MD02G1195100 Malus domestica HOM05D006557 ORTHO05D008177 1.9e-123 447.2 357 63.0
Pp3c20_15200 Physcomitrium patens HOM05D006557 ORTHO05D008177 4.5e-117 426.0 662 40.6
VMungo1383G0754 Vigna mungo HOM05D006557 ORTHO05D008177 2.8e-114 416.8 305 66.6
Mapoly0052s0068 Marchantia polymorpha HOM05D006557 ORTHO05D008177 4.0e-105 386.3 650 38.5
AagrBONN_evm.TU.Sc2ySwM_228.962 Anthoceros agrestis HOM05D006557 ORTHO05D008177 1.5e-104 384.4 629 37.7
SMO165G0089 Selaginella moellendorffii HOM05D006557 ORTHO05D008177 4.4e-96 356.3 591 37.4
CDE11G1252 Ceratophyllum demersum HOM05D006557 ORTHO05D008177 2.2e-95 354.0 327 55.0
Sabra14G0054700 Salix brachista HOM05D006557 ORTHO05D008177 1.2e-77 295.0 300 51.3
unitig_31.g34034 Utricularia gibba HOM05D006557 ORTHO05D008177 2.4e-70 270.8 413 41.4
HPP92_025494 Vanilla planifolia HOM05D006557 ORTHO05D008177 2.2e-63 247.7 275 49.1
Hma1.2p1_0033F.1_g020720 Hydrangea macrophylla HOM05D006557 ORTHO05D008177 1.2e-61 241.9 204 60.8
Haze_15236 Corylus avellana HOM05D006557 ORTHO05D008177 4.3e-59 233.4 138 77.5
SGA_v2.0_scaffold95G28878 Striga asiatica HOM05D006557 ORTHO05D008177 1.4e-57 228.4 184 62.5
CBR_g54105 Chara braunii HOM05D006557 ORTHO05D008177 6.1e-45 186.4 805 25.2
CDE11G0468 Ceratophyllum demersum HOM05D006557 ORTHO05D008177 7.4e-43 179.5 181 52.5
CSS0034846 Camellia sinensis var. sinensis HOM05D006557 ORTHO05D008177 1.5e-40 171.8 242 44.6
VMungo1383G3400 Vigna mungo HOM05D006557 ORTHO05D008177 5.3e-33 146.7 155 50.3
CAN.G170.57 Capsicum annuum HOM05D006557 ORTHO05D008177 1.3e-31 142.1 119 59.7
MD02G1195000 Malus domestica HOM05D006557 ORTHO05D008177 1.3e-23 115.5 101 59.4
MCO11G922 Micromonas commoda HOM05D006557 ORTHO05D008177 2.6e-19 101.3 291 27.5
Cre07.g321200 Chlamydomonas reinhardtii HOM05D006557 ORTHO05D008177 1.3e-18 99.0 312 28.8
SEGI_15167 Sequoiadendron giganteum HOM05D006557 ORTHO05D008177 2.8e-18 97.8 117 43.6
Glyma.15G277300 Glycine max HOM05D006557 ORTHO05D008177 8.2e-18 96.3 80 58.8
Ca_26123_v3 Cicer arietinum L. HOM05D006557 ORTHO05D008177 4.7e-13 80.5 65 60.0
SEGI_29223 Sequoiadendron giganteum HOM05D006557 ORTHO05D008177 4.7e-13 80.5 137 38.0
Mapoly0036s0143 Marchantia polymorpha HOM05D006557 ORTHO05D048806 5.2e-12 77.0 332 23.5
SMO356G0148 Selaginella moellendorffii HOM05D005416 ORTHO05D007956 6.8e-12 76.6 338 23.1
AagrBONN_evm.TU.Sc2ySwM_228.2416 Anthoceros agrestis HOM05D005456 ORTHO05D006805 1.5e-11 75.5 316 25.6
Lj9A576G31 Lonicera japonica HOM05D006557 ORTHO05D008177 7.5e-11 73.2 82 47.6
PGR119G0095 Punica granatum HOM05D005456 ORTHO05D006805 2.8e-10 71.2 169 28.4
Manes.01G033300 Manihot esculenta HOM05D005456 ORTHO05D006805 8.3e-10 69.7 213 28.2
Ah.03g134770 Amaranthus hybridus HOM05D005456 ORTHO05D006805 7.0e-09 66.6 308 24.4
Phvul.002G169400 Phaseolus vulgaris HOM05D005456 ORTHO05D006805 9.1e-09 66.2 168 27.4
Potri.008G090500 Populus trichocarpa HOM05D005456 ORTHO05D006805 1.6e-08 65.5 213 28.2
Eucgr.G02479 Eucalyptus grandis HOM05D005456 ORTHO05D006805 2.7e-08 64.7 163 28.2
Pp3c3_17260 Physcomitrium patens HOM05D005456 ORTHO05D006805 2.7e-08 64.7 130 29.2
Potri.008G134200 Populus trichocarpa HOM05D005416 ORTHO05D007956 4.5e-08 63.9 302 26.2
Oeu021071.2 Olea europaea HOM05D005456 ORTHO05D006805 5.9e-08 63.5 154 28.6
Cpa.g.sc991.1 Carica papaya HOM05D005456 ORTHO05D006805 1.0e-07 62.8 133 30.1
Gorai.005G142600 Gossypium raimondii HOM05D005456 ORTHO05D006805 1.0e-07 62.8 309 24.9
Sabra08G0067900 Salix brachista HOM05D005456 ORTHO05D006805 1.0e-07 62.8 208 27.9
Atru.chr11.1727 Acer truncatum HOM05D005456 ORTHO05D006805 1.7e-07 62.0 137 29.2
Medtr4g082305 Medicago truncatula HOM05D005456 ORTHO05D006805 1.7e-07 62.0 131 30.5
PRCOL_00004732 Prasinoderma coloniale HOM05D006557 ORTHO05D008177 2.3e-07 61.6 374 23.0
Atru.chr11.1728 Acer truncatum HOM05D005456 ORTHO05D006805 2.9e-07 61.2 143 28.7
AT1G14030 Arabidopsis thaliana HOM05D005456 ORTHO05D006805 2.9e-07 61.2 171 28.7
Gohir.D02G127000 Gossypium hirsutum HOM05D005456 ORTHO05D006805 2.9e-07 61.2 309 24.6
QL08p057492 Quercus lobata HOM05D005234 ORTHO05D006583 2.9e-07 61.2 352 22.4
Glyma.20G031600 Glycine max HOM05D005456 ORTHO05D006805 3.8e-07 60.8 164 29.3
Gohir.A03G102200 Gossypium hirsutum HOM05D005456 ORTHO05D006805 3.8e-07 60.8 316 24.4
Lj4g0024233 Lotus japonicus HOM05D005456 ORTHO05D006805 3.8e-07 60.8 164 29.9
VMungo0251G2245 Vigna mungo HOM05D005456 ORTHO05D006805 3.8e-07 60.8 142 29.6
AL1G25870 Arabidopsis lyrata HOM05D005456 ORTHO05D006805 5.0e-07 60.5 172 28.5
ClCG09G021880 Citrullus lanatus HOM05D005456 ORTHO05D006805 5.0e-07 60.5 166 27.7
MELO3C008524.2 Cucumis melo HOM05D005456 ORTHO05D006805 5.0e-07 60.5 166 27.1
Glyma.07G228300 Glycine max HOM05D005456 ORTHO05D006805 5.0e-07 60.5 164 29.3
Nitab4.5_0000391g0340 Nicotiana tabacum HOM05D005456 ORTHO05D006805 5.0e-07 60.5 143 28.7
RcHm_v2.0_Chr4g0439211 Rosa chinensis HOM05D005456 ORTHO05D006805 5.0e-07 60.5 307 23.5
Nitab4.5_0011915g0020 Nicotiana tabacum HOM05D005456 ORTHO05D006805 6.5e-07 60.1 143 28.7
Carub.0001s1372 Capsella rubella HOM05D005456 ORTHO05D006805 8.6e-07 59.7 171 28.1
Ca_08719_v3 Cicer arietinum L. HOM05D005456 ORTHO05D006805 8.6e-07 59.7 150 28.0
Hma1.2p1_0354F.1_g133880 Hydrangea macrophylla HOM05D005456 ORTHO05D006805 8.6e-07 59.7 143 27.3
Zm00001eb190260 Zea mays HOM05D005416 ORTHO05D007956 8.6e-07 59.7 328 22.9
Dinv16685 Davidia involucrata HOM05D005456 ORTHO05D006805 1.1e-06 59.3 143 28.0
Lalb_Chr05g0220241 Lupinus albus HOM05D005456 ORTHO05D006805 1.1e-06 59.3 142 31.0
Ah.02g129440 Amaranthus hybridus HOM05D005456 ORTHO05D006805 1.5e-06 58.9 307 23.5
CANSAT64G0403 Cannabis sativa HOM05D005456 ORTHO05D006805 1.5e-06 58.9 308 22.1
FAN07G2817 Fragaria x ananassa HOM05D005456 ORTHO05D006805 1.5e-06 58.9 143 26.6
vmacro16348 Vaccinium macrocarpon HOM05D005456 ORTHO05D006805 1.5e-06 58.9 155 29.7
CAN.G964.8 Capsicum annuum HOM05D005456 ORTHO05D006805 1.9e-06 58.5 144 28.5
Cfa008936 Carpinus fangiana HOM05D005456 ORTHO05D006805 1.9e-06 58.5 149 27.5
FAN12G1233 Fragaria x ananassa HOM05D005456 ORTHO05D006805 1.9e-06 58.5 143 27.3
Haze_11965 Corylus avellana HOM05D005456 ORTHO05D006805 2.5e-06 58.2 142 28.2
SEGI_20511 Sequoiadendron giganteum HOM05D006557 ORTHO05D008177 2.5e-06 58.2 46 47.8
CARHR014400 Cardamine hirsuta HOM05D005456 ORTHO05D006805 3.2e-06 57.8 171 27.5
CDE07G0572 Ceratophyllum demersum HOM05D005456 ORTHO05D006805 3.2e-06 57.8 116 31.9
Thhalv10007614m.g Eutrema salsugineum HOM05D005456 ORTHO05D006805 4.2e-06 57.4 170 28.2
Aa31LG1G1000 Aethionema arabicum HOM05D005456 ORTHO05D006805 5.5e-06 57.0 143 28.7
CBR_g780 Chara braunii HOM05D005456 ORTHO05D006805 5.5e-06 57.0 160 26.2
Lalb_Chr16g0385691 Lupinus albus HOM05D005456 ORTHO05D006805 5.5e-06 57.0 168 27.4
Prupe.1G278900 Prunus persica HOM05D005456 ORTHO05D006805 5.5e-06 57.0 165 29.1
TWI79G0373 Tripterygium wilfordii HOM05D005456 ORTHO05D006805 5.5e-06 57.0 154 29.2
CsaV3_2G010860 Cucumis sativus L. HOM05D005456 ORTHO05D006805 7.2e-06 56.6 166 25.9
FAN17G1535 Fragaria x ananassa HOM05D005456 ORTHO05D006805 7.2e-06 56.6 143 26.6
MD16G1067900 Malus domestica HOM05D005456 ORTHO05D006805 7.2e-06 56.6 144 27.8
TWI63G0851 Tripterygium wilfordii HOM05D005234 ORTHO05D006583 7.2e-06 56.6 343 22.4
HPP92_025543 Vanilla planifolia HOM05D006557 ORTHO05D008177 7.2e-06 56.6 71 47.9
Actinidia33219 Actinidia chinensis HOM05D005456 ORTHO05D006805 9.5e-06 56.2 150 27.3
THA.LOC104801808 Tarenaya hassleriana HOM05D005456 ORTHO05D006805 9.5e-06 56.2 147 27.2


User provided reference genes

Program Settings