Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 8.2e-177 623.6 317 100.0
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 4.7e-140 501.5 314 78.7
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 1.0e-139 500.4 315 79.0
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.9e-133 479.6 314 75.5
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 2.6e-130 469.2 317 74.4
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 5.7e-130 468.0 313 73.2
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 3.7e-129 465.3 316 74.1
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.1e-128 463.8 315 71.7
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 3.2e-128 462.2 312 71.8
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 7.0e-128 461.1 312 72.4
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 3.5e-127 458.8 313 73.5
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 4.6e-127 458.4 315 71.7
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 7.8e-127 457.6 312 71.8
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.0e-126 457.2 315 72.7
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 1.0e-126 457.2 315 72.4
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-126 456.8 314 71.7
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 2.3e-126 456.1 314 71.3
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.0e-126 455.7 314 71.3
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 3.0e-126 455.7 315 72.4
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.9e-126 455.3 314 71.0
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.0e-126 454.9 314 71.3
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 6.6e-126 454.5 315 71.1
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 6.6e-126 454.5 313 71.6
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.1e-125 453.8 311 71.4
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 1.1e-125 453.8 316 70.6
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 1.5e-125 453.4 315 70.8
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 3.3e-125 452.2 321 70.4
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 3.3e-125 452.2 315 71.7
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 3.3e-125 452.2 315 72.4
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 3.3e-125 452.2 313 70.9
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 4.3e-125 451.8 315 70.2
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 5.6e-125 451.4 314 70.7
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 5.6e-125 451.4 313 70.6
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 9.5e-125 450.7 321 70.1
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 9.5e-125 450.7 348 66.7
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 9.5e-125 450.7 313 71.9
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 1.2e-124 450.3 316 70.3
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.6e-124 449.9 314 71.0
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 2.1e-124 449.5 316 70.6
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 4.7e-124 448.4 311 69.5
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 4.7e-124 448.4 312 71.2
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 6.2e-124 448.0 310 71.6
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 8.0e-124 447.6 318 69.5
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 1.4e-123 446.8 318 69.8
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 5.2e-123 444.9 314 71.0
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 1.2e-122 443.7 313 70.0
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 2.6e-122 442.6 316 69.0
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 3.4e-122 442.2 314 69.7
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 5.8e-122 441.4 318 70.1
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 5.8e-122 441.4 316 69.6
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 5.8e-122 441.4 325 69.2
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 1.7e-121 439.9 320 68.4
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.7e-121 439.9 315 69.8
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 2.2e-121 439.5 314 68.2
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 2.9e-121 439.1 321 68.2
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 3.7e-121 438.7 315 69.2
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 3.7e-121 438.7 312 67.9
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 6.4e-121 438.0 314 69.4
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 8.3e-121 437.6 315 67.9
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.1e-120 437.2 314 68.8
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.4e-120 436.8 315 69.2
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 2.4e-120 436.0 314 69.4
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 2.4e-120 436.0 322 67.4
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 3.2e-120 435.6 315 70.5
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 5.4e-120 434.9 340 66.2
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 9.2e-120 434.1 315 67.6
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 9.2e-120 434.1 318 67.9
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 2.0e-119 433.0 322 66.8
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 1.0e-118 430.6 314 67.5
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 1.3e-118 430.3 315 69.5
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 6.6e-118 427.9 313 66.1
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 1.1e-117 427.2 315 67.3
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 2.5e-117 426.0 315 68.6
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 3.3e-117 425.6 315 68.3
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 4.7e-116 421.8 314 66.2
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 4.7e-116 421.8 315 68.3
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 1.1e-115 420.6 315 67.9
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 1.8e-115 419.9 311 66.6
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 5.2e-115 418.3 315 67.6
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 5.2e-115 418.3 313 68.1
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 6.8e-115 417.9 315 67.9
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 6.8e-115 417.9 280 72.5
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 8.9e-115 417.5 310 66.1
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 1.5e-114 416.8 313 68.7
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 1.5e-114 416.8 316 65.5
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.5e-114 416.8 368 59.0
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 7.5e-114 414.5 315 66.0
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 4.9e-113 411.8 333 62.2
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 2.4e-112 409.5 327 65.1
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 2.4e-112 409.5 305 66.6
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 2.7e-111 406.0 313 66.5
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 1.6e-108 396.7 279 71.0
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 8.9e-107 391.0 314 61.8
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.5e-106 390.2 279 69.9
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.6e-106 389.4 260 73.1
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 5.8e-106 388.3 298 65.4
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 2.7e-103 379.4 274 67.5
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 2.3e-102 376.3 315 61.6
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 6.2e-100 368.2 239 74.9
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 6.9e-99 364.8 231 77.1
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 7.6e-98 361.3 241 74.3
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 3.3e-93 345.9 230 74.3
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 5.6e-93 345.1 311 56.3
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 9.6e-93 344.4 239 69.9
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 3.1e-91 339.3 315 56.2
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 5.1e-86 322.0 203 77.3
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 5.6e-85 318.5 238 67.2
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.3e-84 317.4 231 68.8
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 1.4e-80 303.9 330 51.8
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.3e-78 297.4 309 52.1
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 8.1e-76 288.1 238 63.0
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.4e-75 287.3 241 63.9
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 2.5e-69 266.5 189 69.3
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 1.6e-68 263.8 302 47.0
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.3e-62 244.2 189 65.6
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 8.8e-54 214.9 179 60.9
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 2.9e-49 199.9 321 41.1
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 3.6e-47 193.0 132 68.9
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.0e-46 191.4 313 39.3
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 3.8e-41 172.9 187 52.9
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 1.8e-38 164.1 318 36.8
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-34 150.6 107 70.1
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 7.7e-34 148.7 111 63.1
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 7.7e-34 148.7 111 63.1
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 7.7e-34 148.7 111 63.1
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.0e-33 148.3 122 59.0
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 3.8e-33 146.4 105 69.5
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 3.2e-32 143.3 127 60.6
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 1.1e-27 128.3 78 80.8
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 7.2e-24 115.5 81 72.8
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 1.2e-23 114.8 90 61.1
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.6e-23 114.4 94 60.6
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 2.9e-17 93.6 75 61.3
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 1.4e-14 84.7 85 54.1
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 1.8e-14 84.3 53 73.6
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 1.8e-11 74.3 60 63.3
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 1.8e-11 74.3 60 63.3
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 1.5e-08 64.7 57 49.1
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 4.0e-06 56.6 43 62.8


User provided reference genes

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