Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 0.0e+00 1091.6 562 100.0
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 9.1e-163 577.8 421 68.9
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 3.0e-158 562.8 419 67.8
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 5.7e-157 558.5 400 72.0
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.3e-156 557.4 408 70.8
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 3.7e-156 555.8 416 68.5
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 4.9e-156 555.4 422 66.6
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 6.6e-153 545.0 418 68.9
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.5e-152 543.9 412 69.7
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.5e-152 543.9 407 69.3
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.9e-152 543.5 405 68.9
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 5.6e-152 542.0 412 69.4
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 7.2e-152 541.6 406 68.5
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.6e-151 540.4 373 72.9
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 2.1e-151 540.0 416 66.3
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 2.8e-151 539.7 403 67.5
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 8.0e-151 538.1 404 67.8
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.5e-149 533.9 404 67.8
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 1.5e-149 533.9 418 68.4
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 2.6e-149 533.1 422 65.4
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 3.4e-149 532.7 405 68.9
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 4.9e-148 528.9 398 67.8
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.4e-147 527.3 411 68.1
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.8e-147 526.9 417 66.2
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.8e-147 526.9 416 66.1
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 9.2e-147 524.6 411 67.4
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.2e-146 524.2 401 69.8
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.6e-146 523.9 360 71.4
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 2.0e-146 523.5 420 66.0
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 2.7e-146 523.1 416 65.9
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 2.7e-146 523.1 402 67.4
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 3.0e-145 519.6 355 71.8
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 3.9e-145 519.2 420 64.3
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 5.0e-145 518.8 413 65.4
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 8.6e-145 518.1 413 66.6
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 3.3e-144 516.2 422 64.5
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 4.3e-144 515.8 387 66.9
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 7.3e-144 515.0 419 64.7
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 7.3e-144 515.0 382 69.1
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.8e-142 510.4 411 65.2
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 3.1e-142 509.6 384 68.5
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 3.1e-142 509.6 384 68.5
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 3.1e-142 509.6 404 67.1
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.0e-142 509.2 407 64.4
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.0e-142 509.2 407 64.6
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 5.2e-142 508.8 355 71.3
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 2.6e-141 506.5 398 65.3
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 2.6e-141 506.5 408 63.5
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 2.6e-141 506.5 404 66.8
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 5.8e-141 505.4 512 55.1
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 7.5e-141 505.0 389 66.6
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 7.5e-141 505.0 411 64.0
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.5e-141 505.0 407 64.1
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 1.3e-140 504.2 391 66.5
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 1.3e-140 504.2 389 66.3
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.3e-140 504.2 408 65.2
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 1.3e-140 504.2 400 64.8
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.3e-140 504.2 421 61.8
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 1.7e-140 503.8 403 64.5
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.9e-140 503.1 411 63.5
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 2.9e-140 503.1 393 66.4
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 4.9e-140 502.3 407 65.8
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 6.4e-140 501.9 421 62.2
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 6.4e-140 501.9 352 71.0
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 6.4e-140 501.9 400 64.2
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 6.4e-140 501.9 338 74.3
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 8.3e-140 501.5 352 70.7
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 8.3e-140 501.5 352 70.7
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 8.3e-140 501.5 352 70.5
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 8.3e-140 501.5 404 65.8
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 1.1e-139 501.1 391 65.7
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 1.9e-139 500.4 405 63.7
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 2.4e-139 500.0 407 64.9
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.4e-139 500.0 411 63.5
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 4.1e-139 499.2 398 63.1
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 7.0e-139 498.4 476 57.1
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 9.2e-139 498.0 352 70.7
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 9.2e-139 498.0 352 70.7
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 6.0e-138 495.4 348 70.4
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 6.0e-138 495.4 405 64.2
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 1.0e-137 494.6 398 64.3
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 2.3e-137 493.4 418 62.2
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.5e-136 490.7 410 62.0
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.5e-136 490.7 405 62.7
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 2.8e-135 486.5 366 66.9
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 2.8e-135 486.5 406 62.1
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 4.7e-135 485.7 366 66.7
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.1e-134 484.6 359 68.0
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-134 484.6 364 67.0
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-134 484.6 373 67.0
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 1.1e-134 484.6 410 60.2
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 3.1e-134 483.0 419 64.0
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 4.0e-134 482.6 350 69.1
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 6.8e-134 481.9 389 64.5
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 4.4e-133 479.2 349 68.2
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 5.8e-133 478.8 349 67.9
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 9.8e-133 478.0 338 71.9
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 1.7e-132 477.2 350 68.9
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 1.7e-132 477.2 414 60.4
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.2e-130 471.1 348 67.5
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.1e-130 470.3 392 62.8
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 2.1e-130 470.3 417 59.5
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 2.1e-130 470.3 310 75.8
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 6.0e-130 468.8 334 68.0
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 1.0e-129 468.0 417 59.0
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.3e-129 467.6 363 65.3
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.1e-128 464.5 334 67.7
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 1.9e-128 463.8 372 66.1
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.3e-126 456.8 337 68.2
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 2.3e-121 440.3 415 56.4
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 5.2e-118 429.1 325 66.5
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 1.9e-112 410.6 400 57.0
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.8e-110 404.1 336 59.2
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 9.0e-110 401.7 299 68.6
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 7.6e-109 398.7 351 59.0
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 9.9e-109 398.3 378 56.1
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 2.9e-108 396.7 381 57.2
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.8e-103 380.2 350 55.7
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 8.1e-103 378.6 350 56.0
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-102 377.5 345 55.4
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 2.2e-100 370.5 415 52.0
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 4.2e-99 366.3 409 53.3
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 9.0e-94 348.6 318 53.8
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 3.5e-90 336.7 435 47.4
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 7.9e-90 335.5 275 63.3
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 4.6e-82 309.7 286 58.0
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.1e-74 282.7 320 46.6
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 8.8e-73 278.9 348 42.5
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 2.6e-72 277.3 334 48.5
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.3e-72 276.9 290 48.6
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.9e-68 263.8 378 40.5
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.2e-66 258.5 294 45.2
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 2.7e-66 257.3 294 44.6
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.3e-65 254.2 311 42.8
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.0e-65 253.8 295 44.4
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.6e-64 250.8 308 42.2
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-63 248.1 224 60.7
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-61 241.5 297 41.1
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 3.5e-61 240.4 190 65.8
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.5e-61 240.4 312 41.7
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 3.8e-60 236.9 238 53.8
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.9e-59 234.6 291 42.6
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.0e-57 226.9 179 63.1
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 5.9e-53 213.0 156 70.5
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 1.0e-52 212.2 356 36.8
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 2.9e-52 210.7 184 59.8
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.7e-50 203.4 153 60.1
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.7e-44 184.9 181 55.2
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.5e-44 182.6 353 32.0
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-40 171.8 317 34.7
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.7e-40 169.9 126 71.4
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.5e-40 169.5 342 32.7
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 9.8e-40 169.1 219 43.4
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.3e-39 168.7 343 31.5
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-39 168.3 346 29.8
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.1e-38 163.7 137 62.0
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.0e-38 162.9 322 31.4
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.8e-33 146.4 340 28.8
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.7e-32 143.3 295 33.9
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.8e-32 142.5 313 30.7
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 3.2e-30 137.5 118 55.9
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.0e-30 136.3 297 32.0
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.7e-26 123.6 129 45.0
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.8e-25 121.7 291 29.2
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.0e-24 118.2 73 74.0
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.6e-24 117.9 313 31.0
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 4.4e-24 117.1 343 28.0
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 5.8e-24 116.7 82 72.0
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 9.8e-24 115.9 335 29.6
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 1.7e-23 115.2 77 72.7
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.2e-23 114.8 221 31.7
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.2e-22 110.9 190 34.7
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-21 109.0 295 30.2
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 9.5e-19 99.4 354 26.0
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 4.7e-18 97.1 297 27.3
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 7.8e-13 79.7 71 60.6
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 1.2e-10 72.4 70 57.1
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 1.6e-10 72.0 63 61.9
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.6e-08 63.2 91 38.5
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.9e-08 62.8 145 29.7
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 1.4e-06 58.9 60 50.0
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 7.1e-06 56.6 72 41.7


User provided reference genes

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