Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 1.5e-185 652.9 366 100.0
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 2.4e-87 326.6 340 64.1
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 9.4e-84 314.7 280 60.7
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 1.3e-80 304.3 337 61.7
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 2.4e-79 300.1 304 66.8
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 4.2e-76 289.3 340 51.5
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 2.2e-72 276.9 339 49.0
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 7.7e-70 268.5 332 47.6
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 5.0e-69 265.8 346 46.2
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 3.0e-66 256.5 337 45.4
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 1.5e-65 254.2 337 45.4
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 2.0e-65 253.8 347 47.8
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 4.8e-64 249.2 336 44.6
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 1.8e-63 247.3 263 52.5
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.4e-63 246.9 266 53.8
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 5.4e-63 245.7 275 51.6
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 2.0e-62 243.8 282 52.1
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 2.0e-62 243.8 267 53.2
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.5e-62 243.0 287 51.9
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 7.7e-62 241.9 263 52.5
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 1.3e-61 241.1 275 51.3
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.7e-61 240.7 317 46.1
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 6.5e-61 238.8 337 43.3
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 6.5e-61 238.8 343 45.2
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 5.5e-60 235.7 262 51.9
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 1.2e-59 234.6 304 46.1
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 2.8e-59 233.4 339 44.5
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 3.6e-59 233.0 337 44.2
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 8.0e-59 231.9 337 43.3
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.8e-58 230.7 273 48.0
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 2.3e-58 230.3 268 48.9
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 4.0e-58 229.6 337 42.4
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 5.7e-57 225.7 336 41.4
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 7.5e-57 225.3 274 47.8
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 9.8e-57 224.9 335 41.8
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.3e-56 224.6 296 47.6
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.3e-56 224.6 274 47.4
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.3e-56 224.6 280 49.3
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 3.7e-56 223.0 337 41.8
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 4.9e-56 222.6 330 44.2
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 6.3e-56 222.2 338 42.0
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 8.3e-56 221.9 334 42.8
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 1.8e-55 220.7 334 42.5
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.5e-54 216.5 274 47.4
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.5e-54 216.1 375 42.4
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 4.5e-54 216.1 337 43.3
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.9e-54 215.7 379 41.7
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 5.9e-54 215.7 375 41.9
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 7.8e-54 215.3 305 43.9
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 7.8e-54 215.3 242 50.8
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 7.8e-54 215.3 258 49.2
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.7e-53 214.2 305 41.3
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 2.9e-53 213.4 292 46.6
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 3.8e-53 213.0 336 40.2
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 5.0e-53 212.6 380 41.3
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 6.6e-53 212.2 282 46.8
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 1.5e-52 211.1 264 48.5
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 1.5e-52 211.1 333 41.1
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 4.3e-52 209.5 344 42.7
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 7.3e-52 208.8 380 40.8
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 9.5e-52 208.4 265 46.4
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.6e-51 207.6 358 39.7
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 2.1e-51 207.2 337 39.8
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.8e-51 206.8 339 43.4
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 4.7e-51 206.1 304 42.4
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 8.0e-51 205.3 264 47.7
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 1.8e-50 204.1 265 47.9
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 1.8e-50 204.1 266 45.1
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 5.2e-50 202.6 261 47.9
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 5.2e-50 202.6 337 39.5
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 6.8e-50 202.2 263 45.6
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.2e-49 201.4 265 46.4
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 1.2e-49 201.4 274 45.3
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 1.5e-49 201.1 264 47.0
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 4.4e-49 199.5 308 41.2
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 2.2e-48 197.2 267 47.2
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 2.9e-48 196.8 267 47.6
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 2.9e-48 196.8 267 45.7
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 1.4e-47 194.5 268 45.1
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 5.4e-47 192.6 272 44.9
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 9.2e-47 191.8 338 39.1
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 1.6e-46 191.0 336 39.3
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 2.0e-46 190.7 334 38.9
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 2.7e-46 190.3 267 45.3
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 5.9e-46 189.1 262 46.6
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 1.0e-45 188.3 267 44.9
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.7e-45 187.6 261 46.4
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 3.9e-45 186.4 336 41.1
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 5.0e-45 186.0 340 37.9
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 8.6e-45 185.3 338 40.8
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 1.1e-44 184.9 267 43.1
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 3.3e-44 183.3 338 35.5
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 1.2e-43 181.4 337 40.4
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 6.2e-43 179.1 256 42.2
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.4e-42 177.9 303 42.6
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 8.9e-42 175.3 277 41.9
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 2.0e-41 174.1 258 42.6
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 2.6e-41 173.7 264 43.9
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 2.6e-41 173.7 280 40.0
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 5.8e-41 172.6 347 33.7
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 9.8e-41 171.8 267 40.4
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 1.3e-40 171.4 263 42.2
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 1.3e-40 171.4 239 45.2
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 2.2e-40 170.6 271 42.8
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.7e-40 169.9 320 40.0
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 4.9e-40 169.5 310 37.1
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 6.4e-40 169.1 311 39.2
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 8.3e-40 168.7 231 45.5
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 1.6e-38 164.5 282 39.7
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 1.3e-37 161.4 247 40.9
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.5e-36 157.9 336 36.9
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 2.5e-36 157.1 241 41.9
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 4.3e-36 156.4 266 36.8
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 5.6e-36 156.0 340 37.4
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 4.7e-35 152.9 254 40.2
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 1.1e-34 151.8 336 35.4
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 1.8e-34 151.0 263 37.6
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 6.8e-34 149.1 247 40.5
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.0e-33 147.5 179 48.6
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 5.8e-33 146.0 337 34.7
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 5.8e-33 146.0 262 37.4
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 1.3e-32 144.8 260 37.3
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.7e-32 144.4 259 37.5
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 7.1e-31 139.0 306 34.6
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 2.7e-30 137.1 261 34.9
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 4.6e-30 136.3 303 33.0
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 4.6e-30 136.3 334 31.7
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 7.8e-30 135.6 263 36.5
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 1.3e-29 134.8 264 36.0
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 2.3e-29 134.0 265 37.4
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 5.1e-29 132.9 265 36.6
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 8.6e-29 132.1 267 36.0
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.5e-28 131.3 245 38.0
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 1.5e-28 131.3 259 37.1
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 5.6e-28 129.4 256 36.7
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 6.2e-27 125.9 281 34.5
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 6.8e-26 122.5 230 36.1
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 1.5e-25 121.3 263 33.8
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 1.5e-25 121.3 263 33.8
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 4.4e-25 119.8 260 33.1
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 5.8e-25 119.4 260 33.5
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 9.9e-25 118.6 259 35.5
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 9.9e-25 118.6 259 35.5
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.3e-24 118.2 235 35.3
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 6.4e-24 115.9 141 48.2
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 8.4e-24 115.5 264 34.1
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 4.6e-22 109.8 261 33.0
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 7.8e-22 109.0 264 33.3
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 7.8e-22 109.0 264 33.3
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 6.6e-21 105.9 278 32.7
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 8.6e-21 105.5 264 32.2
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 8.6e-21 105.5 125 44.8
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 8.6e-21 105.5 264 32.2
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 1.1e-20 105.1 273 32.6
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 2.5e-20 104.0 278 33.1
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 3.3e-20 103.6 262 34.0
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 5.6e-20 102.8 109 47.7
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 9.6e-20 102.1 257 33.9
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 1.2e-19 101.7 288 31.6
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.3e-16 91.7 257 30.7
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.1e-15 88.6 218 34.4
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 1.2e-14 85.1 246 28.5
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 1.2e-14 85.1 240 31.7
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 3.5e-14 83.6 230 27.8
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 2.3e-13 80.9 228 32.9
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 3.3e-12 77.0 162 34.6
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 1.4e-10 71.6 322 24.5
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 1.2e-09 68.6 228 25.4
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.5e-09 68.2 86 45.3
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 3.4e-09 67.0 86 45.3
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 7.6e-09 65.9 259 27.4
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 2.2e-08 64.3 63 50.8
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 2.2e-08 64.3 63 50.8
Lj7P510T18 Lonicera japonica HOM05D001925 ORTHO05D004257 2.9e-08 63.9 153 32.7
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 6.4e-08 62.8 243 28.0
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 8.4e-08 62.4 61 49.2
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 8.4e-08 62.4 61 49.2
SEGI_37364 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 8.4e-08 62.4 222 28.8
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 1.1e-07 62.0 242 26.4
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 7.1e-07 59.3 99 36.4
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 9.3e-07 58.9 238 26.9
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 9.3e-07 58.9 242 26.0
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.6e-06 58.2 99 36.4
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 6.0e-06 56.2 79 36.7


User provided reference genes

Program Settings