Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 1.4e-153 546.2 274 100.0
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 5.9e-83 311.6 275 61.5
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 3.0e-82 309.3 277 59.6
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 2.8e-80 302.8 265 60.8
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 6.2e-80 301.6 267 58.8
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 6.2e-80 301.6 251 63.7
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.1e-79 300.8 276 58.3
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 4.0e-79 298.9 274 58.4
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 5.2e-79 298.5 265 59.2
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 1.5e-78 297.0 266 59.0
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 1.5e-78 297.0 273 58.2
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 1.5e-78 297.0 275 57.8
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 2.0e-78 296.6 274 58.0
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 3.4e-78 295.8 273 58.6
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 5.8e-78 295.0 265 57.7
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 9.8e-78 294.3 281 56.2
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 1.3e-77 293.9 267 57.7
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 1.7e-77 293.5 223 65.9
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 1.7e-77 293.5 274 57.7
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 2.2e-77 293.1 224 64.7
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 2.2e-77 293.1 272 58.1
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 2.9e-77 292.7 226 65.0
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 6.4e-77 291.6 271 57.6
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 6.4e-77 291.6 274 55.5
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 8.3e-77 291.2 274 56.6
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 8.3e-77 291.2 295 54.2
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 1.1e-76 290.8 274 56.2
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 1.1e-76 290.8 275 55.6
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.4e-76 289.7 291 55.0
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 5.4e-76 288.5 265 57.0
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 7.0e-76 288.1 268 58.2
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 9.2e-76 287.7 275 56.7
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 9.2e-76 287.7 273 56.8
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 1.2e-75 287.3 269 56.5
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 1.2e-75 287.3 269 56.9
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 1.2e-75 287.3 227 62.1
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 2.0e-75 286.6 266 56.0
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.7e-75 286.2 291 54.0
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 2.7e-75 286.2 275 56.4
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 2.7e-75 286.2 269 57.2
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 3.5e-75 285.8 264 55.3
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 3.5e-75 285.8 266 56.4
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 4.6e-75 285.4 268 57.1
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 4.6e-75 285.4 222 64.9
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 6.0e-75 285.0 223 62.3
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 7.8e-75 284.6 275 56.4
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 1.0e-74 284.3 276 56.5
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 1.3e-74 283.9 224 64.3
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 1.7e-74 283.5 264 56.1
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 1.7e-74 283.5 281 54.4
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 3.0e-74 282.7 264 54.9
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 5.0e-74 282.0 223 64.6
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 5.0e-74 282.0 224 64.3
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 6.6e-74 281.6 224 62.9
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 6.6e-74 281.6 223 64.1
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 6.6e-74 281.6 266 55.6
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 6.6e-74 281.6 273 56.4
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 1.1e-73 280.8 224 64.3
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 1.1e-73 280.8 223 61.0
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 1.5e-73 280.4 223 64.1
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 1.5e-73 280.4 223 64.6
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 3.3e-73 279.3 299 51.8
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 5.6e-73 278.5 251 57.4
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 5.6e-73 278.5 223 63.7
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 9.5e-73 277.7 223 61.0
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 9.5e-73 277.7 251 57.0
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 1.2e-72 277.3 273 53.1
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.6e-72 276.9 224 63.4
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 4.7e-72 275.4 265 53.6
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 8.1e-72 274.6 264 53.4
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.4e-71 273.9 264 53.8
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 1.4e-71 273.9 251 56.2
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 2.3e-71 273.1 264 53.4
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 3.1e-71 272.7 264 53.0
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 3.1e-71 272.7 264 53.4
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 3.1e-71 272.7 230 61.3
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 4.0e-71 272.3 264 53.4
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 5.2e-71 271.9 264 53.0
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 8.9e-71 271.2 264 52.3
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 1.5e-70 270.4 224 61.2
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.5e-70 270.4 195 69.7
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 1.5e-70 270.4 311 49.8
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 3.4e-70 269.2 206 64.6
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 3.4e-70 269.2 224 61.2
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 7.5e-70 268.1 223 61.4
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 1.3e-69 267.3 248 57.7
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 6.4e-69 265.0 268 51.1
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 1.9e-68 263.5 274 52.2
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 3.2e-68 262.7 224 58.0
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 7.1e-68 261.5 223 61.0
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.6e-67 260.4 263 56.7
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.5e-65 253.8 223 57.0
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 2.5e-65 253.1 224 55.8
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 1.2e-64 250.8 268 48.5
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 8.9e-63 244.6 274 51.5
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 7.1e-60 235.0 237 51.5
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 7.1e-60 235.0 237 51.5
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 9.2e-60 234.6 237 51.5
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 1.6e-59 233.8 237 50.6
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 2.1e-59 233.4 237 51.1
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 3.5e-59 232.6 237 51.1
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 3.0e-58 229.6 246 52.8
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.5e-54 217.2 223 48.9
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 2.6e-54 216.5 269 45.4
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 3.4e-54 216.1 194 55.2
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 5.8e-54 215.3 216 55.1
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 9.9e-54 214.5 226 51.8
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 3.8e-53 212.6 275 40.7
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 3.8e-53 212.6 272 41.2
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 6.4e-53 211.8 224 53.1
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.2e-52 209.1 271 40.6
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 9.3e-52 208.0 200 55.0
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 3.0e-50 203.0 264 47.7
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 1.5e-49 200.7 173 59.0
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 3.6e-48 196.1 271 39.1
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 6.2e-48 195.3 211 46.4
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 2.0e-46 190.3 163 58.9
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 2.6e-46 189.9 175 59.4
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 7.6e-46 188.3 225 45.8
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 9.9e-46 188.0 269 42.0
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 8.4e-45 184.9 213 51.6
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 2.4e-44 183.3 197 50.8
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.4e-44 183.3 179 57.5
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.3e-42 176.8 197 46.2
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 8.7e-42 174.9 223 47.1
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.1e-41 174.5 223 43.0
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 3.7e-40 169.5 227 47.1
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 2.0e-38 163.7 222 43.2
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 3.4e-38 162.9 139 59.7
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 3.4e-38 162.9 225 39.1
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 7.1e-36 155.2 129 62.8
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 5.1e-34 149.1 136 55.1
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 2.1e-32 143.7 204 44.6
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.4e-31 141.0 133 54.1
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 5.3e-31 139.0 134 53.0
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 6.9e-31 138.7 248 35.9
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 3.4e-30 136.3 174 45.4
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 1.3e-29 134.4 134 53.0
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 4.9e-29 132.5 263 34.2
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 1.5e-25 120.9 226 33.2
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 4.8e-24 115.9 187 39.6
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.4e-20 104.4 191 36.6
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.9e-20 104.0 80 61.2
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 6.7e-18 95.5 112 49.1
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 2.5e-17 93.6 67 64.2
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.1e-15 86.7 53 69.8
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 5.3e-15 85.9 76 56.6
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-12 75.9 78 48.7
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.9e-10 69.7 42 71.4


User provided reference genes

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