Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27213 Selenicereus undatus HOM05D001772 ORTHO05D005958 7.6e-127 457.2 239 100.0
AUR62023482 Chenopodium quinoa HOM05D001772 ORTHO05D005958 3.8e-49 199.1 272 49.3
Hund16701 Selenicereus undatus HOM05D001772 ORTHO05D005958 3.2e-48 196.1 240 51.7
AUR62004468 Chenopodium quinoa HOM05D001772 ORTHO05D005958 1.2e-47 194.1 282 47.5
Nn3g19052 Nelumbo nucifera HOM05D001772 ORTHO05D005958 1.5e-45 187.2 247 49.4
CSS0019350 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D005958 1.9e-45 186.8 240 52.1
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 1.2e-44 184.1 256 48.8
Hma1.2p1_0077F.1_g039660 Hydrangea macrophylla HOM05D001772 ORTHO05D005958 1.2e-44 184.1 248 49.6
CANSAT56G1679 Cannabis sativa HOM05D001772 ORTHO05D008903 4.7e-44 182.2 256 48.4
Actinidia20227 Actinidia chinensis HOM05D001772 ORTHO05D005958 2.4e-43 179.9 245 49.8
CiPaw.01G074300 Carya illinoinensis HOM05D001772 ORTHO05D005958 2.4e-43 179.9 241 49.0
Potri.002G169100 Populus trichocarpa HOM05D001772 ORTHO05D005958 2.4e-43 179.9 241 49.4
Cfa003819 Carpinus fangiana HOM05D001772 ORTHO05D008903 3.1e-43 179.5 241 46.5
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 3.1e-43 179.5 241 49.0
Nn1g01834 Nelumbo nucifera HOM05D001772 ORTHO05D005958 3.1e-43 179.5 247 48.2
Eucgr.E00068 Eucalyptus grandis HOM05D001772 ORTHO05D005958 4.0e-43 179.1 249 50.2
FvH4_7g16190 Fragaria vesca HOM05D001772 ORTHO05D005958 4.0e-43 179.1 241 49.0
FAN06G4998 Fragaria x ananassa HOM05D001772 ORTHO05D008903 4.0e-43 179.1 241 49.0
Aqoxy5G04175 Aquilegia oxysepala HOM05D001772 ORTHO05D005958 5.2e-43 178.7 244 47.1
Potri.014G096500 Populus trichocarpa HOM05D001772 ORTHO05D005958 6.9e-43 178.3 242 47.5
Ah.05g179770 Amaranthus hybridus HOM05D001772 ORTHO05D005958 1.2e-42 177.6 236 48.7
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.5e-42 177.2 253 46.6
TAR375G0592 Trochodendron aralioides HOM05D001772 ORTHO05D005958 1.5e-42 177.2 245 48.2
Prupe.2G185500 Prunus persica HOM05D001772 ORTHO05D005958 4.4e-42 175.6 241 47.7
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 9.9e-42 174.5 241 46.5
Dinv18731 Davidia involucrata HOM05D001772 ORTHO05D008903 1.3e-41 174.1 247 48.6
Cpa.g.sc490.2 Carica papaya HOM05D001772 ORTHO05D005958 1.7e-41 173.7 254 46.5
EL10Ac1g00296 Beta vulgaris HOM05D001772 ORTHO05D005958 2.9e-41 172.9 264 46.2
MD07G1147500 Malus domestica HOM05D001772 ORTHO05D005958 4.9e-41 172.2 241 47.7
Aqoxy7G00134 Aquilegia oxysepala HOM05D001772 ORTHO05D005958 6.4e-41 171.8 246 47.2
Nitab4.5_0000838g0040 Nicotiana tabacum HOM05D001772 ORTHO05D005958 6.4e-41 171.8 241 47.7
COL.COLO4_06308 Corchorus olitorius HOM05D001772 ORTHO05D005958 8.4e-41 171.4 280 46.1
Nitab4.5_0011592g0020 Nicotiana tabacum HOM05D001772 ORTHO05D005958 1.1e-40 171.0 255 46.3
Lj3g0001091 Lotus japonicus HOM05D001772 ORTHO05D005958 1.4e-40 170.6 274 43.4
Gohir.A12G111400 Gossypium hirsutum HOM05D001772 ORTHO05D005958 2.4e-40 169.9 245 49.4
PGR042G0802 Punica granatum HOM05D001772 ORTHO05D005958 2.4e-40 169.9 242 47.1
RcHm_v2.0_Chr1g0359191 Rosa chinensis HOM05D001772 ORTHO05D005958 2.4e-40 169.9 241 46.9
Nitab4.5_0001123g0060 Nicotiana tabacum HOM05D001772 ORTHO05D005958 3.2e-40 169.5 265 42.6
TWI23G1206 Tripterygium wilfordii HOM05D001772 ORTHO05D005958 4.2e-40 169.1 242 47.1
VMungo0331G1517 Vigna mungo HOM05D001772 ORTHO05D005958 4.2e-40 169.1 241 47.7
Gohir.A08G125900 Gossypium hirsutum HOM05D001772 ORTHO05D005958 7.1e-40 168.3 243 47.3
Cc02_g39150 Coffea canephora HOM05D001772 ORTHO05D005958 9.3e-40 167.9 245 47.8
FAN10G1004 Fragaria x ananassa HOM05D001772 ORTHO05D005958 9.3e-40 167.9 253 45.1
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 9.3e-40 167.9 253 45.1
Nitab4.5_0000360g0010 Nicotiana tabacum HOM05D001772 ORTHO05D005958 9.3e-40 167.9 238 46.6
Gorai.008G124200 Gossypium raimondii HOM05D001772 ORTHO05D005958 2.1e-39 166.8 244 47.1
QL04p056704 Quercus lobata HOM05D001772 ORTHO05D005958 2.1e-39 166.8 226 47.8
Actinidia28128 Actinidia chinensis HOM05D001772 ORTHO05D005958 2.7e-39 166.4 231 48.5
Glyma.07G057200 Glycine max HOM05D001772 ORTHO05D005958 3.5e-39 166.0 242 46.7
Lalb_Chr17g0342481 Lupinus albus HOM05D001772 ORTHO05D005958 3.5e-39 166.0 273 43.6
Haze_15634 Corylus avellana HOM05D001772 ORTHO05D005958 4.6e-39 165.6 241 44.8
Oeu043209.1 Olea europaea HOM05D001772 ORTHO05D005958 4.6e-39 165.6 244 47.1
SGA_v2.0_scaffold43G16374 Striga asiatica HOM05D001772 ORTHO05D005958 7.8e-39 164.9 239 45.2
Peaxi162Scf00786g00450 Petunia axillaris HOM05D001772 ORTHO05D005958 3.0e-38 162.9 249 46.2
Gohir.D08G147000 Gossypium hirsutum HOM05D001772 ORTHO05D005958 6.6e-38 161.8 238 46.6
Gorai.004G152500 Gossypium raimondii HOM05D001772 ORTHO05D005958 6.6e-38 161.8 238 46.6
Duzib138G1424 Durio zibethinus HOM05D001772 ORTHO05D005958 8.7e-38 161.4 245 48.6
arahy.Tifrunner.gnm1.ann1.DXZ71K Arachis hypogaea HOM05D001772 ORTHO05D005958 1.1e-37 161.0 234 48.7
Glyma.16G026200 Glycine max HOM05D001772 ORTHO05D005958 1.1e-37 161.0 249 45.8
arahy.Tifrunner.gnm1.ann1.8C9R1J Arachis hypogaea HOM05D001772 ORTHO05D005958 1.5e-37 160.6 260 45.4
Manes.05G024700 Manihot esculenta HOM05D001772 ORTHO05D005958 1.9e-37 160.2 238 43.7
Sopen10g005380 Solanum pennellii HOM05D001772 ORTHO05D005958 1.9e-37 160.2 270 41.5
Rhsim01G0171300 Rhododendron simsii HOM05D001772 ORTHO05D005958 3.3e-37 159.5 225 48.9
Thecc.01G345000 Theobroma cacao HOM05D001772 ORTHO05D005958 3.3e-37 159.5 238 47.1
vmacro20858 Vaccinium macrocarpon HOM05D001772 ORTHO05D005958 4.3e-37 159.1 222 49.1
Solyc01g095670.4 Solanum lycopersicum HOM05D001772 ORTHO05D005958 7.3e-37 158.3 244 45.9
Sopen01g039410 Solanum pennellii HOM05D001772 ORTHO05D005958 7.3e-37 158.3 244 45.9
PGSC0003DMG400019883 Solanum tuberosum HOM05D001772 ORTHO05D005958 7.3e-37 158.3 270 42.2
unitig_8.g4994 Utricularia gibba HOM05D000331 ORTHO05D005958 9.6e-37 157.9 239 44.8
Manes.01G247500 Manihot esculenta HOM05D001772 ORTHO05D005958 3.6e-36 156.0 241 44.8
Phvul.010G112100 Phaseolus vulgaris HOM05D001772 ORTHO05D005958 3.6e-36 156.0 251 45.0
ECA240G4072 Erigeron canadensis HOM05D001772 ORTHO05D008903 6.2e-36 155.2 243 42.8
PGSC0003DMG400000214 Solanum tuberosum HOM05D001772 ORTHO05D005958 8.1e-36 154.8 227 45.4
Psat4g160440 Pisum sativum HOM05D001772 ORTHO05D005958 1.1e-35 154.5 287 41.1
Solyc10g009570.3 Solanum lycopersicum HOM05D001772 ORTHO05D005958 1.1e-35 154.5 237 43.9
arahy.Tifrunner.gnm1.ann1.F3DNBB Arachis hypogaea HOM05D001772 ORTHO05D005958 1.4e-35 154.1 238 45.4
Ciclev10020161m.g Citrus clementina HOM05D001772 ORTHO05D005958 1.8e-35 153.7 241 45.2
Lalb_Chr10g0100391 Lupinus albus HOM05D001772 ORTHO05D005958 4.0e-35 152.5 280 40.4
Oeu007904.1 Olea europaea HOM05D001772 ORTHO05D005958 4.0e-35 152.5 233 48.5
TAR636G2875 Trochodendron aralioides HOM05D001772 ORTHO05D005958 5.3e-35 152.1 247 43.7
arahy.Tifrunner.gnm1.ann1.G8BSRK Arachis hypogaea HOM05D001772 ORTHO05D005958 6.9e-35 151.8 246 44.3
Sc23g0002200 Simmondsia chinensis HOM05D001772 ORTHO05D005958 6.9e-35 151.8 101 74.3
CAN.G986.28 Capsicum annuum HOM05D001772 ORTHO05D005958 9.0e-35 151.4 248 45.2
Medtr8g027835 Medicago truncatula HOM05D001772 ORTHO05D005958 2.0e-34 150.2 276 40.2
DCAR_008656 Daucus carota HOM05D001772 ORTHO05D005958 3.4e-34 149.4 256 41.8
AL6G52330 Arabidopsis lyrata HOM05D001772 ORTHO05D005958 9.9e-34 147.9 257 42.4
BcaC04g24121 Brassica carinata HOM05D001772 ORTHO05D005958 9.9e-34 147.9 257 42.8
SGA_v2.0_scaffold5G03005 Striga asiatica HOM05D001772 ORTHO05D005958 1.3e-33 147.5 239 45.2
Duzib133G1484 Durio zibethinus HOM05D001772 ORTHO05D005958 2.2e-33 146.7 225 46.2
HanXRQChr11g0353041 Helianthus annuus HOM05D001772 ORTHO05D005958 2.2e-33 146.7 250 44.8
BcaC01g06840 Brassica carinata HOM05D001772 ORTHO05D005958 3.8e-33 146.0 241 43.2
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 3.8e-33 146.0 241 43.2
Sabra02G0143000 Salix brachista HOM05D001772 ORTHO05D005958 4.9e-33 145.6 242 43.0
CAN.G818.1 Capsicum annuum HOM05D001772 ORTHO05D005958 6.4e-33 145.2 237 44.7
PSO063G7149 Papaver somniferum HOM05D001772 ORTHO05D005958 1.9e-32 143.7 262 42.4
MBI06_g46728_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D005958 2.4e-32 143.3 231 43.7
C09p00870 Brassica napus HOM05D001772 ORTHO05D005958 4.2e-32 142.5 262 42.0
PSO170G2207 Papaver somniferum HOM05D001772 ORTHO05D005958 4.2e-32 142.5 262 42.0
Peaxi162Scf00218g00416 Petunia axillaris HOM05D001772 ORTHO05D005958 4.2e-32 142.5 238 43.3
Zm00001eb238170 Zea mays HOM05D001772 ORTHO05D005958 4.2e-32 142.5 278 39.2
BcaC04g24115 Brassica carinata HOM05D001772 ORTHO05D005958 5.4e-32 142.1 262 41.6
Atru.chr5.643 Acer truncatum HOM05D001772 ORTHO05D005958 9.3e-32 141.4 228 43.9
BolC9t53021H Brassica oleracea HOM05D001772 ORTHO05D005958 9.3e-32 141.4 261 41.0
ClCG05G000930 Citrullus lanatus HOM05D001772 ORTHO05D005958 9.3e-32 141.4 251 42.2
SalBow3G2334 Salvia bowleyana HOM05D001772 ORTHO05D005958 1.2e-31 141.0 98 71.4
Actinidia28499 Actinidia chinensis HOM05D001772 ORTHO05D005958 1.6e-31 140.6 171 50.9
BcaB01g02344 Brassica carinata HOM05D001772 ORTHO05D005958 1.6e-31 140.6 245 42.4
CARHR249260 Cardamine hirsuta HOM05D001772 ORTHO05D005958 2.7e-31 139.8 262 40.8
CsaV3_3G008160 Cucumis sativus L. HOM05D001772 ORTHO05D005958 2.7e-31 139.8 242 42.6
THA.LOC104809830 Tarenaya hassleriana HOM05D001772 ORTHO05D005958 2.7e-31 139.8 237 43.0
Lsat_1_v5_gn_3_139620 Lactuca sativa HOM05D001772 ORTHO05D005958 4.6e-31 139.0 268 38.4
A03p31810 Brassica napus HOM05D001772 ORTHO05D008903 7.9e-31 138.3 241 41.5
BraA03t12356Z Brassica rapa HOM05D001772 ORTHO05D008903 7.9e-31 138.3 241 41.5
Sabra14G0070800 Salix brachista HOM05D001772 ORTHO05D008903 1.8e-30 137.1 312 35.3
MELO3C006035.2 Cucumis melo HOM05D001772 ORTHO05D005958 2.3e-30 136.7 242 42.1
MD01G1078500 Malus domestica HOM05D001772 ORTHO05D005958 3.9e-30 136.0 242 43.4
A09p00240 Brassica napus HOM05D001772 ORTHO05D005958 5.1e-30 135.6 261 39.5
C03p38820 Brassica napus HOM05D001772 ORTHO05D008903 5.1e-30 135.6 249 41.4
GSVIVG01027075001 Vitis vinifera HOM05D001772 ORTHO05D005958 5.1e-30 135.6 168 49.4
Thhalv10028649m.g Eutrema salsugineum HOM05D001772 ORTHO05D005958 6.7e-30 135.2 253 39.9
AT4G01050 Arabidopsis thaliana HOM05D001772 ORTHO05D005958 8.7e-30 134.8 266 39.8
TAR374G0629 Trochodendron aralioides HOM05D001772 ORTHO05D005958 8.7e-30 134.8 227 44.1
Migut.N01556 Erythranthe guttata HOM05D001772 ORTHO05D005958 1.1e-29 134.4 244 42.2
Sp6g01090 Schrenkiella parvula HOM05D001772 ORTHO05D005958 2.5e-29 133.3 172 48.3
TAR374G0181 Trochodendron aralioides HOM05D001772 ORTHO05D005958 2.5e-29 133.3 234 42.7
Carub.0006s3611 Capsella rubella HOM05D001772 ORTHO05D005958 3.3e-29 132.9 274 39.4
BraA09t35751Z Brassica rapa HOM05D001772 ORTHO05D005958 7.4e-29 131.7 261 39.1
Ca_26358_v3 Cicer arietinum L. HOM05D001772 ORTHO05D005958 1.3e-28 131.0 238 39.1
Gohir.D12G114700 Gossypium hirsutum HOM05D001772 ORTHO05D005958 3.7e-28 129.4 225 43.6
HPP92_008635 Vanilla planifolia HOM05D001772 ORTHO05D005958 1.1e-27 127.9 249 38.6
Lj9A595G54 Lonicera japonica HOM05D001772 ORTHO05D005958 1.8e-27 127.1 182 42.3
Sed0022865 Sechium edule HOM05D001772 ORTHO05D005958 1.8e-27 127.1 243 39.9
SalBow3G4655 Salvia bowleyana HOM05D001772 ORTHO05D005958 4.0e-27 125.9 239 40.6
Aa31LG5G910 Aethionema arabicum HOM05D001772 ORTHO05D005958 9.0e-27 124.8 294 36.1
MSTRG.17331 Avicennia marina HOM05D001772 ORTHO05D005958 2.0e-26 123.6 170 45.9
TPR.G7664 Trifolium pratense HOM05D001772 ORTHO05D005958 3.4e-26 122.9 264 36.4
ATR0589G056 Amborella trichopoda HOM05D001772 ORTHO05D005958 7.1e-24 115.2 102 58.8
SMO111G0042 Selaginella moellendorffii HOM05D001772 ORTHO05D005958 2.1e-23 113.6 246 36.2
Pp3c20_13120 Physcomitrium patens HOM05D001772 ORTHO05D005958 5.1e-22 109.0 99 55.6
Mapoly0027s0106 Marchantia polymorpha HOM05D001772 ORTHO05D005958 1.1e-21 107.8 187 36.9
Os02g0257300 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D005958 5.6e-21 105.5 229 38.4
Pp3c10_10490 Physcomitrium patens HOM05D001772 ORTHO05D005958 6.2e-20 102.1 114 48.2
AagrBONN_evm.TU.Sc2ySwM_228.819 Anthoceros agrestis HOM05D001772 ORTHO05D005958 1.8e-19 100.5 113 47.8
MBI06_g29328_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D005958 2.4e-19 100.1 84 60.7
Pp3c14_24370 Physcomitrium patens HOM05D001772 ORTHO05D005958 7.6e-18 95.1 114 45.6
Sed0013783 Sechium edule HOM05D001772 ORTHO05D005958 1.8e-14 84.0 57 64.9
Sed0001533 Sechium edule HOM05D001772 ORTHO05D005958 3.0e-14 83.2 57 64.9
Sed0025835 Sechium edule HOM05D001772 ORTHO05D005958 3.9e-14 82.8 57 64.9
CDE03G0069 Ceratophyllum demersum HOM05D001772 ORTHO05D005958 2.4e-11 73.6 208 34.6
COL.COLO4_06028 Corchorus olitorius HOM05D001772 ORTHO05D005958 2.6e-10 70.1 59 57.6
Dinv32568 Davidia involucrata HOM05D001772 ORTHO05D005958 2.5e-08 63.5 35 80.0


User provided reference genes

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