Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 9.3e-121 436.8 207 100.0
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 9.7e-94 347.1 197 78.7
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 1.1e-86 323.6 204 72.5
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 4.3e-86 321.6 206 69.9
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 4.3e-86 321.6 201 70.6
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 2.2e-85 319.3 199 71.9
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 2.8e-85 318.9 199 71.9
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 2.8e-85 318.9 199 71.9
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.7e-85 318.5 199 71.4
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 4.1e-84 315.1 198 72.2
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 9.1e-84 313.9 196 73.0
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.5e-83 313.2 191 73.8
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.5e-83 313.2 191 73.8
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.4e-83 312.0 192 72.4
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 1.3e-82 310.1 199 68.3
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 2.9e-82 308.9 200 69.0
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 3.8e-82 308.5 192 72.4
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 1.1e-81 307.0 196 69.9
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 3.2e-81 305.4 196 69.4
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 5.5e-81 304.7 217 65.4
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 5.5e-81 304.7 192 71.9
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 1.2e-80 303.5 192 71.9
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 1.2e-80 303.5 193 72.0
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 1.2e-80 303.5 196 70.4
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 2.1e-80 302.8 199 71.4
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 4.7e-80 301.6 192 70.3
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 7.9e-80 300.8 191 71.7
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 1.4e-79 300.1 193 71.0
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 1.4e-79 300.1 193 71.0
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 1.8e-79 299.7 193 70.5
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 1.8e-79 299.7 201 68.7
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 3.9e-79 298.5 198 68.2
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 3.9e-79 298.5 169 77.5
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 5.1e-79 298.1 192 68.8
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 8.8e-79 297.4 192 69.8
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 8.8e-79 297.4 204 68.1
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 8.8e-79 297.4 193 69.9
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 2.6e-78 295.8 206 67.5
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 4.4e-78 295.0 200 66.5
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 7.4e-78 294.3 192 69.3
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 9.7e-78 293.9 198 69.7
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 1.3e-77 293.5 192 69.8
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 1.7e-77 293.1 198 66.2
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 1.7e-77 293.1 192 70.8
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 3.7e-77 292.0 192 70.3
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 3.7e-77 292.0 192 69.3
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 3.7e-77 292.0 190 68.4
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 6.3e-77 291.2 190 69.5
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 6.3e-77 291.2 201 65.7
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 1.4e-76 290.0 191 71.7
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 1.4e-76 290.0 198 69.2
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 3.1e-76 288.9 192 68.8
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 1.5e-75 286.6 192 69.3
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 2.0e-75 286.2 192 66.1
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 3.4e-75 285.4 194 68.0
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 4.5e-75 285.0 192 65.6
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 7.7e-75 284.3 203 65.5
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 2.9e-74 282.3 197 63.5
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 3.8e-74 282.0 199 65.8
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 6.5e-74 281.2 202 63.9
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 6.5e-74 281.2 185 70.3
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 8.5e-74 280.8 184 70.7
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 1.1e-73 280.4 169 74.0
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 1.1e-73 280.4 199 67.3
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 1.9e-73 279.6 204 65.7
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 3.2e-73 278.9 197 64.0
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 3.2e-73 278.9 203 62.1
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 7.2e-73 277.7 202 62.9
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 9.4e-73 277.3 199 62.8
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 9.4e-73 277.3 199 62.8
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 9.4e-73 277.3 195 63.6
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 2.7e-72 275.8 159 78.0
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 8.0e-72 274.2 199 62.8
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 2.3e-71 272.7 192 63.5
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 2.0e-70 269.6 166 74.7
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 2.0e-70 269.6 201 60.7
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 3.3e-70 268.9 198 62.6
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 1.1e-68 263.8 196 61.2
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 2.0e-67 259.6 159 74.2
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 5.9e-67 258.1 204 60.8
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 3.8e-66 255.4 156 72.4
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 4.2e-65 251.9 203 60.6
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 1.6e-64 250.0 167 67.7
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 2.1e-64 249.6 192 58.9
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 3.6e-64 248.8 197 56.3
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 6.1e-64 248.1 198 57.6
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 1.0e-63 247.3 164 67.1
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 1.0e-63 247.3 190 57.9
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 7.5e-62 241.1 166 67.5
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 2.4e-60 236.1 204 55.9
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 1.9e-57 226.5 221 52.0
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 4.2e-57 225.3 192 57.3
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 9.4e-57 224.2 159 65.4
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 2.7e-56 222.6 192 56.2
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.0e-55 220.7 133 72.9
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.0e-55 220.7 133 72.9
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 6.3e-53 211.5 201 51.7
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 2.0e-51 206.5 192 51.6
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 5.9e-51 204.9 192 45.8
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 7.7e-51 204.5 132 65.9
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.7e-50 203.4 199 48.7
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 5.5e-49 198.4 173 56.1
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 8.0e-48 194.5 192 50.5
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 4.0e-47 192.2 204 48.0
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 3.7e-45 185.7 113 73.5
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 3.7e-37 159.1 92 78.3
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 4.9e-37 158.7 92 75.0
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 1.1e-36 157.5 222 39.2
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 7.3e-33 144.8 81 77.8
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 4.0e-31 139.0 154 45.5
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 1.1e-28 131.0 111 56.8
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 2.8e-24 116.3 184 34.2
ATR0757G161 Amborella trichopoda HOM05D000026 ORTHO05D008596 3.1e-23 112.8 70 71.4
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 4.9e-21 105.5 76 61.8
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 8.3e-21 104.8 54 90.7
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 2.8e-16 89.7 230 30.9
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 5.2e-15 85.5 68 54.4
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 1.3e-13 80.9 57 59.6
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 1.9e-12 77.0 62 59.7
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 5.4e-12 75.5 110 35.5
Haze_15680 Corylus avellana HOM05D000026 ORTHO05D008596 2.5e-09 66.6 40 70.0


User provided reference genes

Program Settings