Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 8.9e-310 1066.2 589 100.0
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 8.9e-310 1066.2 589 100.0
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 4.7e-93 346.3 596 41.9
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 1.7e-90 337.8 598 44.0
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 6.3e-90 335.9 619 41.5
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 6.3e-90 335.9 498 45.2
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 1.1e-89 335.1 598 42.6
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 9.1e-89 332.0 602 43.2
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 5.9e-88 329.3 497 44.7
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 2.5e-86 323.9 599 42.4
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 2.5e-86 323.9 599 41.9
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 4.2e-86 323.2 599 42.9
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 7.2e-86 322.4 599 40.6
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 8.0e-85 318.9 600 42.0
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 1.0e-84 318.5 599 40.4
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 1.8e-84 317.8 598 41.8
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 1.8e-84 317.8 521 41.8
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 6.8e-84 315.8 499 46.1
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 8.9e-84 315.5 496 42.7
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.5e-83 314.7 600 39.8
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 4.4e-83 313.2 593 39.3
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 4.4e-83 313.2 594 42.3
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 5.7e-83 312.8 597 39.0
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 5.7e-83 312.8 604 40.1
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 7.5e-83 312.4 512 41.8
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 9.8e-83 312.0 596 40.4
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 2.2e-82 310.8 602 39.7
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 3.7e-82 310.1 500 42.2
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 6.3e-82 309.3 508 41.5
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.1e-81 308.5 617 38.9
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 1.4e-81 308.1 500 44.6
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.4e-81 308.1 612 39.9
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 2.4e-81 307.4 596 39.4
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 3.1e-81 307.0 593 39.0
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 3.1e-81 307.0 493 42.2
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 3.1e-81 307.0 600 41.3
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 7.0e-81 305.8 588 38.9
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 9.2e-81 305.4 591 39.4
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 9.2e-81 305.4 603 40.1
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 2.7e-80 303.9 522 41.0
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 3.5e-80 303.5 600 41.3
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 3.5e-80 303.5 577 40.2
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 4.5e-80 303.1 595 43.0
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 5.9e-80 302.8 492 42.7
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 5.9e-80 302.8 587 39.5
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 1.3e-79 301.6 491 44.8
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 1.3e-79 301.6 595 39.2
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 6.6e-79 299.3 605 38.2
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.1e-78 298.5 493 44.4
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 1.2e-77 295.0 505 41.2
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.6e-77 294.7 621 37.8
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 2.1e-77 294.3 509 41.3
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 2.8e-77 293.9 490 41.2
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 3.6e-77 293.5 497 41.6
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 4.7e-77 293.1 578 38.1
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 1.8e-76 291.2 499 40.1
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 8.9e-76 288.9 498 40.2
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 8.9e-76 288.9 594 38.7
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 9.8e-75 285.4 600 38.3
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 4.9e-74 283.1 519 41.4
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 8.3e-74 282.3 591 40.3
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 1.4e-73 281.6 500 39.8
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 2.4e-73 280.8 656 36.4
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 1.2e-72 278.5 529 39.5
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 2.7e-72 277.3 597 36.7
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 1.0e-71 275.4 602 38.0
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 3.3e-70 270.4 594 37.5
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 5.6e-70 269.6 591 36.4
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 2.1e-69 267.7 589 36.3
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 3.6e-69 266.9 455 40.9
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 4.7e-69 266.5 602 38.2
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 6.2e-69 266.2 615 37.7
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 6.2e-69 266.2 615 37.7
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 4.0e-68 263.5 615 36.3
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 2.0e-67 261.2 470 41.5
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 7.5e-67 259.2 489 41.9
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 2.2e-66 257.7 609 35.6
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 3.2e-65 253.8 489 42.3
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 3.2e-65 253.8 588 37.9
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 4.1e-65 253.4 603 35.7
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 2.7e-64 250.8 494 41.5
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 4.6e-64 250.0 620 36.1
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 7.8e-64 249.2 465 39.6
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 1.7e-63 248.1 490 40.0
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.3e-63 247.7 511 37.4
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 3.0e-63 247.3 511 37.6
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 6.6e-63 246.1 385 46.8
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.9e-62 244.6 502 38.8
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 3.3e-62 243.8 439 40.3
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 5.6e-62 243.0 584 33.9
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 9.5e-62 242.3 514 37.9
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 1.6e-61 241.5 622 35.9
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 1.8e-60 238.0 478 37.0
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 2.9e-58 230.7 452 38.9
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 1.9e-57 228.0 498 37.1
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 9.2e-57 225.7 483 40.6
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 4.6e-56 223.4 473 39.3
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 4.6e-56 223.4 473 40.6
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 6.0e-56 223.0 494 36.4
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 3.9e-55 220.3 561 34.2
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 6.6e-55 219.5 593 34.1
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 1.5e-54 218.4 597 33.5
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 6.8e-52 209.5 496 37.3
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 8.9e-52 209.1 483 36.4
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 1.2e-51 208.8 434 38.9
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 1.5e-51 208.4 467 37.3
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 2.6e-51 207.6 481 36.4
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 4.4e-51 206.8 635 32.8
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 5.8e-51 206.5 608 34.9
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 2.9e-50 204.1 530 35.3
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 1.6e-48 198.4 462 37.7
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 3.5e-48 197.2 600 31.7
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 8.7e-47 192.6 601 33.9
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 8.7e-47 192.6 281 45.6
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.5e-46 191.0 287 50.9
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 7.3e-46 189.5 478 34.1
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.3e-45 188.7 334 39.8
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.1e-45 188.0 287 51.2
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 6.9e-44 183.0 102 81.4
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 7.8e-40 169.5 342 36.3
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 3.0e-39 167.5 289 44.6
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 5.1e-39 166.8 96 79.2
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 6.6e-39 166.4 488 33.0
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 3.6e-37 160.6 357 45.1
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 1.5e-35 155.2 579 31.3
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 4.5e-35 153.7 283 42.8
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 6.4e-34 149.8 101 66.3
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 1.0e-31 142.5 490 29.0
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 2.3e-31 141.4 368 31.5
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 3.1e-28 131.0 410 31.2
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 1.3e-26 125.6 213 46.5
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 2.9e-26 124.4 68 85.3
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 1.5e-22 112.1 79 59.5
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 7.4e-22 109.8 89 58.4
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 7.4e-22 109.8 277 37.9
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.4e-20 105.5 74 68.9
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 3.1e-20 104.4 173 46.8
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 2.0e-19 101.7 64 71.9
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 3.8e-18 97.4 69 68.1
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.8e-15 88.6 51 80.4
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.1e-12 79.3 343 32.4
HPP92_017745 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.0e-10 72.8 84 46.4
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 2.9e-10 71.2 64 46.9
Haze_10772 Corylus avellana HOM05D004969 ORTHO05D006085 2.3e-07 61.6 126 38.9
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 6.7e-07 60.1 52 57.7
Gohir.A07G173840 Gossypium hirsutum HOM05D004969 ORTHO05D006085 3.3e-06 57.8 161 34.2


User provided reference genes

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