Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 7.7e-197 690.3 341 100.0
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.9e-134 483.0 322 72.7
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 4.4e-128 461.8 323 69.3
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 3.7e-127 458.8 304 74.0
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 8.4e-127 457.6 326 67.8
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 8.4e-127 457.6 339 64.6
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 4.1e-126 455.3 325 67.4
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 4.6e-125 451.8 331 65.9
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 3.9e-124 448.7 320 66.2
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.1e-123 447.2 339 66.1
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.1e-123 447.2 337 62.9
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 2.5e-123 446.0 317 67.2
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 9.6e-123 444.1 333 64.6
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-122 443.7 321 65.4
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 3.6e-122 442.2 308 67.5
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 4.7e-122 441.8 321 65.1
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 8.1e-122 441.0 330 65.5
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.4e-121 440.3 321 64.5
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.2e-121 438.3 321 65.1
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 6.8e-121 438.0 321 65.1
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 8.9e-121 437.6 312 67.3
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 8.9e-121 437.6 330 65.8
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 2.0e-120 436.4 312 66.3
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.6e-120 436.0 318 67.3
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 3.4e-120 435.6 312 66.3
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 5.8e-120 434.9 322 65.2
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 7.6e-120 434.5 326 64.7
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 1.3e-119 433.7 318 67.0
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.3e-119 433.7 326 64.7
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.3e-119 433.7 304 67.8
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 2.2e-119 433.0 326 64.4
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 3.8e-119 432.2 341 63.0
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 3.8e-119 432.2 320 65.3
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 8.4e-119 431.0 318 64.8
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 8.4e-119 431.0 331 64.7
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 1.1e-118 430.6 330 64.8
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 2.4e-118 429.5 314 66.9
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 2.4e-118 429.5 320 65.9
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 3.2e-118 429.1 335 63.9
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 3.2e-118 429.1 329 62.9
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 4.2e-118 428.7 329 63.8
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 7.1e-118 427.9 259 78.0
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 9.3e-118 427.6 360 59.4
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 1.6e-117 426.8 305 67.5
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.6e-117 426.8 324 65.1
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 1.6e-117 426.8 315 64.8
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 2.7e-117 426.0 333 63.4
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 3.5e-117 425.6 326 63.2
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 6.0e-117 424.9 322 65.8
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 7.8e-117 424.5 314 65.3
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 7.8e-117 424.5 314 65.3
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.0e-116 424.1 305 67.2
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 1.0e-116 424.1 305 67.5
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 3.0e-116 422.5 326 62.6
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 3.9e-116 422.2 320 64.4
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.9e-116 422.2 330 63.0
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 2.5e-115 419.5 305 65.2
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 3.3e-115 419.1 339 61.4
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 4.3e-115 418.7 316 64.6
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 2.8e-114 416.0 333 62.2
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 4.8e-114 415.2 382 56.5
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 6.2e-114 414.8 317 63.1
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 8.1e-114 414.5 316 64.2
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.4e-113 413.7 251 76.9
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.4e-113 412.9 342 60.2
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.4e-113 412.9 342 60.2
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 5.3e-113 411.8 381 55.9
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 6.9e-113 411.4 322 62.1
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.2e-112 410.6 319 63.3
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.2e-112 410.6 309 65.0
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.2e-112 410.6 322 62.1
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.5e-112 410.2 319 63.0
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 4.4e-112 408.7 318 62.9
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 4.4e-112 408.7 295 66.8
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 5.8e-112 408.3 319 62.7
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.9e-110 403.3 279 68.8
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 1.9e-110 403.3 335 60.9
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.2e-110 402.5 275 69.5
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 4.2e-110 402.1 320 62.2
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 2.7e-109 399.4 320 61.6
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 4.6e-109 398.7 320 61.2
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 6.0e-109 398.3 323 61.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 7.9e-109 397.9 335 60.6
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 7.9e-109 397.9 305 63.0
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.0e-108 397.5 319 62.4
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.7e-108 396.7 285 68.4
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.8e-105 386.7 306 62.7
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 1.8e-105 386.7 316 59.5
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.5e-104 383.6 290 64.8
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 4.9e-103 378.6 323 58.5
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 1.1e-102 377.5 293 63.8
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 2.4e-102 376.3 267 66.3
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 3.2e-102 375.9 268 66.4
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 2.7e-101 372.9 336 57.4
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 7.9e-101 371.3 323 56.0
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 3.0e-100 369.4 375 53.6
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 3.9e-100 369.0 308 62.0
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 1.8e-97 360.1 251 68.1
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 2.9e-95 352.8 309 55.7
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 4.6e-93 345.5 324 56.8
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 1.8e-92 343.6 289 59.5
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 3.0e-92 342.8 339 55.2
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 2.5e-91 339.7 350 51.1
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.8e-90 336.3 335 55.5
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 1.1e-89 334.3 328 55.8
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.4e-89 334.0 257 62.6
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 2.0e-88 330.1 311 55.0
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 3.4e-88 329.3 313 54.6
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 3.4e-88 329.3 339 52.8
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 4.5e-88 328.9 311 55.0
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 5.9e-88 328.6 213 69.0
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.7e-87 327.0 218 71.1
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.2e-87 326.6 316 55.7
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.1e-86 324.3 342 53.2
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 3.6e-85 319.3 318 52.5
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 3.0e-84 316.2 329 52.9
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 3.3e-83 312.8 390 45.1
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.7e-79 300.4 280 54.6
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 2.9e-79 299.7 238 60.9
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.9e-78 297.0 389 43.7
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 5.5e-78 295.4 318 51.6
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 5.1e-76 288.9 245 59.2
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 6.3e-74 282.0 306 47.4
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 7.2e-70 268.5 310 45.2
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 2.2e-63 246.9 311 42.8
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.6e-61 240.7 301 43.5
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 4.7e-61 239.2 251 50.6
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 6.1e-61 238.8 303 43.9
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 3.8e-55 219.5 241 50.6
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.3e-50 204.5 254 43.3
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 1.8e-49 200.7 144 66.0
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.9e-47 193.4 160 56.9
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 8.5e-47 191.8 334 38.3
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 1.1e-46 191.4 199 45.2
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 3.2e-46 189.9 152 60.5
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 8.0e-45 185.3 132 61.4
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 4.0e-44 183.0 113 76.1
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 5.2e-44 182.6 245 41.2
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.0e-40 170.6 288 36.1
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 4.5e-40 169.5 246 44.7
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 2.3e-36 157.1 270 37.8
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 1.4e-33 147.9 291 32.0
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 5.4e-33 146.0 88 77.3
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 4.6e-32 142.9 267 34.5
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.6e-27 127.1 262 33.2
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.4e-27 126.3 233 34.8
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 5.8e-27 125.9 394 27.9
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 6.4e-26 122.5 309 32.7
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.1e-22 111.7 263 31.6
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.6e-22 109.4 153 39.9
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 2.1e-21 107.5 113 41.6
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 4.7e-21 106.3 114 39.5
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 4.7e-21 106.3 146 41.8
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.2e-21 105.9 171 35.7
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.5e-19 101.3 212 34.0
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 2.0e-19 100.9 65 67.7
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 2.0e-19 100.9 65 67.7
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 4.4e-19 99.8 65 66.2
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 5.4e-17 92.8 291 25.8
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 6.6e-15 85.9 60 63.3
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.3e-10 71.6 79 49.4
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 3.2e-09 67.0 74 47.3
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 4.6e-08 63.2 115 40.0


User provided reference genes

Program Settings