Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 1.3e-245 852.8 465 100.0
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 5.5e-130 468.8 457 60.6
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 1.5e-111 407.5 463 55.1
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.0e-108 397.1 396 60.4
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 6.7e-104 382.1 474 50.8
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 8.8e-104 381.7 393 58.0
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.0e-103 380.6 453 54.1
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.3e-99 367.9 453 53.0
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.2e-97 361.3 460 49.8
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 3.6e-97 359.8 509 49.1
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 3.6e-97 359.8 457 50.5
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 1.4e-93 347.8 465 49.2
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 2.4e-93 347.1 458 48.7
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.6e-92 344.4 466 48.7
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.6e-92 344.4 471 48.2
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 7.7e-92 342.0 485 46.8
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 3.8e-91 339.7 509 46.8
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 2.5e-90 337.0 463 48.6
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 7.2e-90 335.5 454 50.9
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 9.4e-90 335.1 474 47.9
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 4.7e-89 332.8 463 47.1
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.0e-88 331.6 461 49.5
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 3.0e-88 330.1 468 49.6
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 2.0e-87 327.4 448 48.7
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 5.7e-87 325.9 473 47.8
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 9.8e-87 325.1 458 48.9
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 6.3e-86 322.4 475 47.4
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 9.1e-85 318.5 482 47.1
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 2.0e-84 317.4 457 47.0
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 3.5e-84 316.6 432 48.6
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 4.5e-84 316.2 461 47.5
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.7e-84 315.5 457 46.8
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 5.0e-83 312.8 477 46.1
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 8.6e-83 312.0 452 47.1
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.1e-82 311.6 449 48.3
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 1.9e-82 310.8 446 47.5
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 2.5e-82 310.5 458 45.2
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 7.2e-82 308.9 452 47.1
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.1e-81 307.4 461 46.4
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.7e-81 306.2 473 46.1
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 4.7e-81 306.2 458 46.1
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 8.0e-81 305.4 457 46.0
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 6.8e-80 302.4 437 47.6
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 1.2e-79 301.6 464 45.7
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 2.0e-79 300.8 468 45.9
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 2.6e-79 300.4 452 46.2
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 4.4e-79 299.7 556 41.7
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.5e-79 298.9 458 45.0
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 1.3e-78 298.1 460 45.2
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.2e-78 297.4 458 44.8
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 3.7e-78 296.6 441 46.7
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 6.3e-78 295.8 469 44.8
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 1.1e-77 295.0 436 46.1
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 7.0e-77 292.4 467 43.9
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 1.6e-76 291.2 381 50.4
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.0e-76 290.8 466 45.1
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 2.0e-76 290.8 456 44.5
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 7.8e-76 288.9 357 51.3
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 5.0e-75 286.2 410 46.8
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 6.6e-75 285.8 542 41.1
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 1.9e-74 284.3 468 44.4
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 2.5e-74 283.9 467 43.0
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 3.3e-74 283.5 452 43.4
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.3e-74 283.1 460 45.2
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 5.6e-74 282.7 460 43.5
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 2.1e-73 280.8 488 43.4
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.8e-72 277.7 444 44.4
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 1.8e-72 277.7 403 46.4
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 6.8e-72 275.8 442 43.9
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 8.9e-72 275.4 428 46.7
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 1.5e-71 274.6 452 41.4
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 3.7e-70 270.0 453 43.5
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 6.4e-70 269.2 451 41.9
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 8.3e-70 268.9 452 43.4
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 8.3e-70 268.9 464 42.2
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 1.4e-69 268.1 440 43.2
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 5.4e-69 266.2 465 43.4
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.6e-68 264.6 449 41.9
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 2.7e-68 263.8 453 41.9
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 6.0e-68 262.7 586 36.7
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.7e-67 261.2 449 42.3
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.5e-66 258.1 483 40.4
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 7.3e-66 255.8 469 40.7
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 1.2e-65 255.0 462 41.3
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 2.1e-65 254.2 374 47.6
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 3.6e-65 253.4 463 40.2
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 3.1e-64 250.4 435 42.8
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 6.8e-64 249.2 447 42.1
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 8.9e-64 248.8 436 42.4
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 8.9e-64 248.8 420 42.1
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.0e-63 247.7 462 41.6
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 2.6e-63 247.3 350 47.7
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 4.4e-63 246.5 471 39.7
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 5.8e-63 246.1 442 40.5
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 1.3e-62 245.0 464 39.7
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 1.7e-62 244.6 295 53.9
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.7e-62 244.6 444 41.2
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 2.2e-62 244.2 452 41.2
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 2.2e-62 244.2 452 41.2
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 3.2e-61 240.4 443 40.6
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 3.2e-61 240.4 451 40.4
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 4.6e-60 236.5 440 39.8
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.0e-59 235.3 390 45.4
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 8.6e-59 232.3 449 39.4
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 4.3e-58 229.9 481 37.0
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 1.8e-56 224.6 435 40.5
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 2.3e-56 224.2 438 36.5
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 2.4e-53 214.2 447 39.1
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.1e-52 211.1 452 37.2
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 3.3e-50 203.8 355 43.4
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.9e-46 190.7 385 38.7
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 6.0e-36 156.4 316 38.6
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.6e-33 148.3 272 39.7
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 1.4e-32 145.2 515 30.3
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 1.8e-32 144.8 293 39.6
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.7e-30 138.3 161 54.0
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 4.6e-28 130.2 169 48.5
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 3.0e-27 127.5 143 52.4
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 1.9e-26 124.8 505 27.9
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.6e-25 121.7 117 59.0
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.1e-24 119.0 451 28.2
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 2.4e-24 117.9 483 27.3
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 3.8e-22 110.5 405 28.6
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 1.0e-19 102.4 299 33.8
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 1.3e-19 102.1 171 39.8
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 7.4e-18 96.3 71 69.0
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 5.3e-16 90.1 130 46.2
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 2.6e-15 87.8 128 39.8
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 4.5e-15 87.0 438 26.3
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.7e-14 85.1 128 43.8
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.6e-12 78.6 70 55.7
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.8e-11 75.1 66 59.1
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.1e-10 72.4 67 53.7
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 1.5e-10 72.0 59 62.7
EL10Ac8g19333 Beta vulgaris HOM05D005355 ORTHO05D006591 1.1e-08 65.9 69 58.0
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.0e-07 61.6 57 56.1


User provided reference genes

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