Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 2.0e-186 655.6 325 100.0
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 1.7e-124 449.9 326 66.9
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 9.8e-117 424.1 304 67.8
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 2.5e-112 409.5 287 67.6
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 3.0e-110 402.5 326 61.7
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 6.8e-110 401.4 328 61.9
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 8.8e-110 401.0 328 61.6
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 4.4e-109 398.7 347 58.2
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 5.7e-109 398.3 293 64.8
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 7.5e-109 397.9 306 62.4
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 7.5e-109 397.9 282 67.0
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 9.8e-109 397.5 326 60.4
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 2.2e-108 396.4 298 63.4
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 6.3e-108 394.8 328 59.8
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 8.3e-108 394.4 312 59.9
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 3.1e-107 392.5 319 59.9
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 7.0e-107 391.3 321 60.7
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 9.2e-107 391.0 314 60.5
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 9.2e-107 391.0 313 58.8
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 2.0e-106 389.8 313 58.1
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 2.7e-106 389.4 293 61.4
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 2.7e-106 389.4 324 60.8
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 1.3e-105 387.1 313 58.1
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 1.7e-105 386.7 294 62.9
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 8.6e-105 384.4 293 64.2
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 8.6e-105 384.4 292 64.0
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 2.5e-104 382.9 333 57.7
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 5.6e-104 381.7 328 59.5
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 5.6e-104 381.7 312 59.9
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 3.6e-103 379.0 321 58.9
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 6.1e-103 378.3 295 58.6
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 1.0e-102 377.5 293 63.1
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 7.5e-101 371.3 290 62.4
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 2.2e-100 369.8 293 61.8
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 4.9e-100 368.6 296 59.8
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 3.2e-99 365.9 327 56.9
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 4.1e-99 365.5 322 56.5
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 5.4e-99 365.2 301 58.8
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 5.4e-99 365.2 295 58.6
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 2.0e-98 363.2 317 57.1
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 5.9e-98 361.7 322 55.6
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 7.8e-98 361.3 303 58.4
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 7.8e-98 361.3 294 56.1
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 1.0e-97 360.9 321 56.7
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 1.3e-97 360.5 293 57.3
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 6.6e-97 358.2 297 58.9
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 2.5e-96 356.3 321 55.5
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 2.5e-96 356.3 316 56.3
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 5.6e-96 355.1 321 55.1
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 1.2e-95 354.0 309 57.0
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 1.6e-95 353.6 303 56.8
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 1.4e-94 350.5 278 60.8
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 5.2e-94 348.6 316 54.1
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 1.2e-93 347.4 322 53.4
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 1.5e-93 347.1 295 56.3
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 2.0e-93 346.7 321 53.0
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 2.6e-93 346.3 316 54.1
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 9.8e-93 344.4 322 54.0
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.9e-92 342.8 272 62.5
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 3.7e-92 342.4 294 55.4
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 1.9e-91 340.1 328 53.7
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 9.2e-91 337.8 316 53.8
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 4.6e-90 335.5 313 53.7
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 4.6e-90 335.5 350 48.0
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 1.7e-89 333.6 313 53.0
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 2.3e-89 333.2 285 58.6
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 5.0e-89 332.0 313 53.4
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 2.1e-87 326.6 288 54.9
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 2.8e-87 326.2 267 58.1
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 2.0e-85 320.1 354 48.0
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 3.4e-85 319.3 317 51.4
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.3e-84 317.4 265 58.9
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 4.9e-84 315.5 244 63.9
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 4.1e-83 312.4 307 54.4
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 9.2e-83 311.2 324 49.7
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 2.3e-78 296.6 347 47.6
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 1.5e-72 277.3 326 45.7
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 6.2e-71 271.9 207 63.8
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 6.2e-71 271.9 300 49.0
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 1.1e-70 271.2 203 64.5
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 1.3e-65 254.2 211 58.8
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 1.5e-64 250.8 205 56.1
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 6.2e-63 245.4 270 49.6
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 9.0e-62 241.5 210 53.8
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 7.6e-61 238.4 326 44.8
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 1.9e-59 233.8 288 46.2
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 1.9e-59 233.8 241 53.5
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 7.1e-59 231.9 273 50.2
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 7.1e-59 231.9 205 54.6
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 2.1e-55 220.3 303 40.9
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.8e-49 200.7 189 55.6
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.1e-46 191.4 286 42.0
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 9.3e-43 178.3 289 35.6
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 2.3e-41 173.7 122 64.8
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 2.3e-41 173.7 212 43.4
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 1.8e-38 164.1 294 33.3
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 5.0e-36 156.0 126 56.3
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 7.4e-32 142.1 112 59.8
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 6.9e-30 135.6 110 61.8
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 6.9e-30 135.6 96 64.6
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 1.1e-27 128.3 99 60.6
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 4.2e-27 126.3 80 62.5
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.2e-26 124.8 89 64.0
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 1.0e-25 121.7 91 61.5
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 3.0e-25 120.2 79 65.8
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 1.1e-24 118.2 162 35.8
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 5.3e-22 109.4 270 28.9
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 2.1e-18 97.4 74 60.8
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 2.7e-18 97.1 96 51.0
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 7.9e-18 95.5 177 36.2
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.8e-17 94.4 74 59.5
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 2.8e-15 87.0 65 61.5
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 7.5e-08 62.4 45 62.2
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 3.1e-06 57.0 44 61.4
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 9.1e-06 55.5 151 29.1
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 9.1e-06 55.5 151 29.1


User provided reference genes

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