Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.5e-128 462.2 247 100.0
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 6.3e-84 314.7 241 70.5
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.0e-61 240.0 156 79.5
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.0e-61 240.0 157 79.6
Hund26842 Selenicereus undatus HOM05D006739 ORTHO05D008402 8.1e-39 164.9 110 79.1
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 2.3e-33 146.7 167 51.5
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 4.5e-29 132.5 179 46.4
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 4.9e-28 129.0 163 48.5
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 7.1e-27 125.2 199 43.7
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 1.3e-25 120.9 175 45.7
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 3.0e-25 119.8 170 45.3
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 8.7e-25 118.2 185 44.9
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 1.9e-24 117.1 247 33.2
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 2.5e-24 116.7 185 43.8
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 1.6e-23 114.0 184 45.1
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 1.1e-22 111.3 178 42.1
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 2.4e-22 110.2 169 43.8
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 6.9e-22 108.6 169 41.4
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 2.0e-21 107.1 209 38.8
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 1.3e-20 104.4 176 42.0
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 1.7e-20 104.0 184 40.8
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 1.7e-20 104.0 173 41.0
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 2.9e-20 103.2 165 37.6
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 6.5e-20 102.1 193 40.4
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.1e-19 101.3 167 41.3
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.1e-19 101.3 167 41.3
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 2.5e-19 100.1 160 43.1
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 3.2e-19 99.8 182 40.1
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 9.3e-19 98.2 162 40.7
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 1.6e-18 97.4 204 36.3
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 2.7e-18 96.7 162 40.7
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 2.7e-18 96.7 162 40.7
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 3.5e-18 96.3 177 41.2
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 4.6e-18 95.9 178 39.9
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 6.0e-18 95.5 214 33.6
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 7.9e-18 95.1 166 42.8
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 1.3e-17 94.4 120 51.7
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 1.3e-17 94.4 165 39.4
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 5.1e-17 92.4 161 37.9
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 5.1e-17 92.4 165 39.4
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 5.1e-17 92.4 161 41.6
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 6.7e-17 92.0 238 32.8
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 1.1e-16 91.3 121 43.8
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 1.9e-16 90.5 247 29.6
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 4.8e-15 85.9 162 36.4
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 8.2e-15 85.1 167 38.9
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 1.4e-14 84.3 170 38.2
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 1.8e-14 84.0 174 36.8
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 1.8e-14 84.0 175 38.9
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 2.4e-14 83.6 165 38.8
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 2.4e-14 83.6 167 40.1
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 3.1e-14 83.2 111 45.0
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 4.1e-14 82.8 122 45.1
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 6.9e-14 82.0 168 39.3
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 9.0e-14 81.6 167 38.3
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 9.0e-14 81.6 170 35.3
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 1.2e-13 81.3 82 56.1
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 1.5e-13 80.9 97 50.5
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 2.0e-13 80.5 178 36.0
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 2.6e-13 80.1 165 40.6
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 3.4e-13 79.7 159 37.7
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 3.4e-13 79.7 162 38.3
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 4.5e-13 79.3 93 50.5
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 4.5e-13 79.3 166 37.3
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 5.9e-13 79.0 168 41.7
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 7.6e-13 78.6 180 36.1
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 7.6e-13 78.6 180 36.1
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 1.0e-12 78.2 161 37.9
HPP92_004376 Vanilla planifolia HOM05D006739 ORTHO05D008402 1.3e-12 77.8 90 48.9
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 2.9e-12 76.6 131 38.2
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 2.9e-12 76.6 164 36.0
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 3.8e-12 76.3 131 37.4
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 3.8e-12 76.3 131 38.2
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 3.8e-12 76.3 131 37.4
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 6.5e-12 75.5 162 35.2
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 8.4e-12 75.1 161 36.6
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.1e-11 74.7 161 36.0
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 1.1e-11 74.7 92 46.7
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 1.4e-11 74.3 86 47.7
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.9e-11 73.9 151 34.4
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 1.9e-11 73.9 86 47.7
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 1.9e-11 73.9 173 32.9
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 3.2e-11 73.2 83 47.0
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 3.2e-11 73.2 111 40.5
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 4.2e-11 72.8 142 33.1
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 4.2e-11 72.8 86 45.3
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 4.2e-11 72.8 160 36.2
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 4.2e-11 72.8 119 40.3
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 5.5e-11 72.4 89 50.6
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 5.5e-11 72.4 104 41.3
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 7.2e-11 72.0 164 34.8
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 7.2e-11 72.0 114 39.5
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 7.2e-11 72.0 86 46.5
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 7.2e-11 72.0 131 35.9
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 9.3e-11 71.6 89 50.6
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 9.3e-11 71.6 160 35.6
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 9.3e-11 71.6 146 34.2
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 1.2e-10 71.2 102 43.1
CSS0008501 Camellia sinensis var. sinensis HOM05D007536 ORTHO05D009390 1.6e-10 70.9 80 48.8
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.6e-10 70.9 86 44.2
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 1.6e-10 70.9 86 44.2
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.1e-10 70.5 89 43.8
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 2.1e-10 70.5 115 35.7
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 2.7e-10 70.1 99 46.5
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 2.7e-10 70.1 86 44.2
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 2.7e-10 70.1 86 44.2
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 2.7e-10 70.1 114 38.6
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 2.7e-10 70.1 128 37.5
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 2.7e-10 70.1 82 47.6
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 3.5e-10 69.7 165 33.3
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 3.5e-10 69.7 89 49.4
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 3.5e-10 69.7 68 52.9
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 4.6e-10 69.3 96 40.6
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 4.6e-10 69.3 156 36.5
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 4.6e-10 69.3 126 39.7
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 6.1e-10 68.9 86 45.3
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 6.1e-10 68.9 161 36.6
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 7.9e-10 68.6 86 45.3
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 7.9e-10 68.6 86 45.3
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 1.0e-09 68.2 95 40.0
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 1.0e-09 68.2 86 44.2
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 1.3e-09 67.8 86 41.9
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 1.8e-09 67.4 86 44.2
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 1.8e-09 67.4 86 43.0
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 1.8e-09 67.4 98 41.8
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 2.3e-09 67.0 130 33.8
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 3.0e-09 66.6 86 50.0
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 3.9e-09 66.2 104 42.3
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 5.1e-09 65.9 86 43.0
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 5.1e-09 65.9 172 32.6
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 6.7e-09 65.5 95 42.1
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 6.7e-09 65.5 53 56.6
BcaC07g41933 Brassica carinata HOM05D007536 ORTHO05D009390 6.7e-09 65.5 81 42.0
C08p49910 Brassica napus HOM05D007536 ORTHO05D009390 6.7e-09 65.5 81 42.0
BolC8t52519H Brassica oleracea HOM05D007536 ORTHO05D009390 6.7e-09 65.5 81 42.0
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 6.7e-09 65.5 111 36.0
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 8.7e-09 65.1 129 39.5
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 8.7e-09 65.1 108 41.7
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 1.1e-08 64.7 111 43.2
SalBow2G2822 Salvia bowleyana HOM05D006819 ORTHO05D008763 1.9e-08 63.9 95 37.9
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 2.5e-08 63.5 86 37.2
Cc10_g08260 Coffea canephora HOM05D008425 ORTHO05D010555 3.3e-08 63.2 67 53.7
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 3.3e-08 63.2 83 43.4
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 3.3e-08 63.2 149 33.6
BraA09t41926Z Brassica rapa HOM05D007536 ORTHO05D009390 5.7e-08 62.4 77 40.3
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 5.7e-08 62.4 104 37.5
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 5.7e-08 62.4 108 39.8
Lj4P741T26 Lonicera japonica HOM05D006739 ORTHO05D008402 7.4e-08 62.0 67 49.3
Cpa.g.sc177.10 Carica papaya HOM05D006739 ORTHO05D008402 9.7e-08 61.6 32 84.4
Oeu012210.1 Olea europaea HOM05D006739 ORTHO05D008402 9.7e-08 61.6 67 49.3
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 1.3e-07 61.2 107 42.1
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 1.6e-07 60.8 95 42.1
CANSAT54G0748 Cannabis sativa HOM05D007536 ORTHO05D009390 1.6e-07 60.8 161 26.7
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.6e-07 60.8 86 40.7
Lj5A202T40 Lonicera japonica HOM05D006918 ORTHO05D008525 1.6e-07 60.8 123 31.7
HanXRQChr04g0104281 Helianthus annuus HOM05D016049 ORTHO05D019812 2.8e-07 60.1 75 37.3
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 3.7e-07 59.7 86 37.2
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 4.8e-07 59.3 65 52.3
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 6.3e-07 58.9 118 35.6
Zm00001eb244420 Zea mays HOM05D028708 ORTHO05D442728 8.2e-07 58.5 88 37.5
Actinidia19612 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.1e-06 58.2 44 63.6
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 1.1e-06 58.2 89 38.2
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 1.1e-06 58.2 89 38.2
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 1.1e-06 58.2 86 34.9
Dinv22007 Davidia involucrata HOM05D006739 ORTHO05D008402 1.4e-06 57.8 44 63.6
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 1.4e-06 57.8 124 33.1
Aa31LG2G14190 Aethionema arabicum HOM05D008483 ORTHO05D010726 1.8e-06 57.4 86 36.0
CANSAT25G1844 Cannabis sativa HOM05D006739 ORTHO05D008402 2.4e-06 57.0 158 31.6
AL1G45930 Arabidopsis lyrata HOM05D008483 ORTHO05D010726 4.1e-06 56.2 86 34.9
Carub.0001s3017 Capsella rubella HOM05D008483 ORTHO05D010726 4.1e-06 56.2 79 36.7
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 4.1e-06 56.2 46 63.0
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 4.1e-06 56.2 115 34.8
Ca_15539_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 5.3e-06 55.8 51 51.0
MBI16_g14339_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 5.3e-06 55.8 67 47.8
Zm00001eb151420 Zea mays HOM05D037632 ORTHO05D009568 5.3e-06 55.8 56 46.4
CDE04G1469 Ceratophyllum demersum HOM05D007536 ORTHO05D009390 6.9e-06 55.5 80 41.2
Sp2g13190 Schrenkiella parvula HOM05D008835 ORTHO05D011094 6.9e-06 55.5 92 28.3
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 6.9e-06 55.5 123 35.8
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 9.0e-06 55.1 67 38.8
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 9.0e-06 55.1 117 32.5


User provided reference genes

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