Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 4.4e-104 381.3 195 100.0
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 4.1e-38 162.2 214 48.6
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.1e-33 147.5 199 44.7
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 9.9e-32 141.0 187 44.4
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.2e-31 139.8 187 44.4
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.9e-31 139.4 187 44.4
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 1.4e-30 137.1 190 45.8
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 7.1e-30 134.8 183 44.8
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 9.3e-30 134.4 182 44.5
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 6.0e-29 131.7 183 46.4
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.0e-29 131.7 191 45.0
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 6.0e-29 131.7 191 45.0
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 7.8e-29 131.3 183 46.4
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 2.3e-28 129.8 179 42.5
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 8.7e-28 127.9 176 45.5
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.7e-28 127.9 191 43.5
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 1.5e-27 127.1 180 45.0
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.9e-27 126.7 180 46.7
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.3e-27 125.9 175 44.0
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 3.3e-27 125.9 184 44.0
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 4.3e-27 125.6 180 46.7
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 2.1e-26 123.2 186 41.4
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 2.8e-26 122.9 196 39.8
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 6.2e-26 121.7 208 40.4
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 8.1e-26 121.3 180 42.2
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.4e-25 120.6 181 43.1
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 1.8e-25 120.2 187 43.3
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.8e-25 120.2 175 45.1
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 2.4e-25 119.8 206 39.8
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 4.0e-25 119.0 194 39.2
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 5.3e-25 118.6 179 41.9
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 6.9e-25 118.2 182 39.6
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 9.0e-25 117.9 179 41.9
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 9.0e-25 117.9 181 42.5
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 9.0e-25 117.9 185 44.3
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 1.2e-24 117.5 179 41.3
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.5e-24 117.1 179 45.8
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.5e-24 117.1 180 46.1
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 3.4e-24 115.9 195 37.9
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 5.8e-24 115.2 203 37.9
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 7.6e-24 114.8 170 43.5
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.7e-23 113.6 192 41.1
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.2e-23 113.2 198 39.9
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.9e-23 112.1 185 42.2
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 8.4e-23 111.3 187 39.0
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 1.1e-22 110.9 178 41.6
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 1.1e-22 110.9 187 39.0
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 3.2e-22 109.4 195 36.4
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 4.2e-22 109.0 188 38.8
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 4.2e-22 109.0 177 40.1
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 7.1e-22 108.2 188 43.1
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 7.1e-22 108.2 193 40.9
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 9.3e-22 107.8 181 39.2
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 9.3e-22 107.8 177 41.8
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 1.2e-21 107.5 219 34.7
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 1.6e-21 107.1 180 40.6
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 1.6e-21 107.1 230 34.3
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.6e-21 107.1 183 41.0
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 2.1e-21 106.7 200 38.5
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.5e-21 105.9 187 40.6
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 3.5e-21 105.9 187 38.5
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 6.0e-21 105.1 198 36.9
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 6.0e-21 105.1 186 41.9
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 7.9e-21 104.8 179 38.5
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 7.9e-21 104.8 175 40.6
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.0e-20 104.4 180 37.8
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 1.3e-20 104.0 177 39.0
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.3e-20 104.0 183 38.8
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 1.8e-20 103.6 189 40.2
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 2.3e-20 103.2 176 40.9
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.3e-20 103.2 177 38.4
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.3e-20 103.2 174 42.0
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 2.3e-20 103.2 178 40.4
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 2.3e-20 103.2 185 38.9
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 3.0e-20 102.8 177 39.0
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 3.0e-20 102.8 180 40.6
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 3.9e-20 102.4 191 36.6
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 3.9e-20 102.4 191 36.6
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 3.9e-20 102.4 176 40.9
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 3.9e-20 102.4 176 40.3
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.9e-20 102.4 189 40.2
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 3.9e-20 102.4 199 35.2
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 5.1e-20 102.1 176 40.9
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 5.1e-20 102.1 184 42.9
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 6.7e-20 101.7 176 39.8
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 6.7e-20 101.7 176 39.8
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 6.7e-20 101.7 176 39.8
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 6.7e-20 101.7 176 39.8
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 6.7e-20 101.7 175 40.0
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 8.7e-20 101.3 185 41.1
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 8.7e-20 101.3 185 37.8
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 1.1e-19 100.9 191 39.8
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.5e-19 100.5 181 38.1
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.9e-19 100.1 223 34.1
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.5e-19 99.8 179 40.8
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 2.5e-19 99.8 176 40.3
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 2.5e-19 99.8 176 40.3
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 2.5e-19 99.8 176 40.3
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 3.3e-19 99.4 176 40.3
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 3.3e-19 99.4 176 40.3
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 5.6e-19 98.6 197 38.1
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 7.4e-19 98.2 174 39.7
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 7.4e-19 98.2 180 40.0
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 7.4e-19 98.2 176 39.8
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 1.6e-18 97.1 201 35.8
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 2.8e-18 96.3 197 34.5
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 8.1e-18 94.7 170 38.2
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 8.1e-18 94.7 170 38.2
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 8.1e-18 94.7 170 38.2
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 8.1e-18 94.7 176 34.7
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 1.8e-17 93.6 174 37.4
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 2.4e-17 93.2 116 48.3
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 3.1e-17 92.8 180 37.2
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 5.3e-17 92.0 174 39.7
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 5.3e-17 92.0 176 37.5
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 5.3e-17 92.0 208 36.1
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 6.9e-17 91.7 182 39.0
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 6.9e-17 91.7 164 39.6
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 9.0e-17 91.3 191 34.6
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 1.2e-16 90.9 170 37.1
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 1.2e-16 90.9 170 37.1
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.2e-16 90.9 186 34.9
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.5e-16 90.5 202 35.1
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.6e-16 89.7 164 39.0
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 3.4e-16 89.4 193 34.7
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 4.5e-16 89.0 206 32.5
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 9.9e-16 87.8 181 34.3
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 1.7e-15 87.0 189 31.7
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 2.9e-15 86.3 129 41.1
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.9e-15 86.3 177 33.9
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 8.4e-15 84.7 200 32.0
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 8.4e-15 84.7 190 36.8
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 8.4e-15 84.7 169 37.3
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 8.4e-15 84.7 184 32.1
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.4e-14 84.0 211 31.8
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 2.4e-14 83.2 199 31.7
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 4.2e-14 82.4 185 33.0
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 9.3e-14 81.3 176 31.2
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 1.2e-13 80.9 191 36.1
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 2.7e-13 79.7 131 42.0
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 2.7e-13 79.7 178 32.6
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.9e-12 75.9 180 32.8
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.9e-12 75.9 173 30.1
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.5e-11 73.9 193 31.6
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.9e-11 73.6 200 30.0
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.3e-11 72.8 186 32.3
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 4.3e-11 72.4 190 28.9
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 3.7e-10 69.3 176 31.8
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.1e-09 67.8 185 30.3
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.4e-09 67.4 180 32.2
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 2.4e-09 66.6 176 31.2
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 6.9e-09 65.1 184 33.2
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 6.9e-09 65.1 184 33.2
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 1.2e-08 64.3 72 47.2
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.5e-08 63.9 60 58.3
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 2.6e-08 63.2 189 30.2
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.6e-08 63.2 119 37.8
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 7.6e-08 61.6 184 32.6
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 7.6e-08 61.6 184 32.6
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 1.0e-07 61.2 184 32.1
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 2.9e-07 59.7 154 32.5
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 4.9e-07 58.9 181 29.3
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 1.4e-06 57.4 61 49.2
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.5e-06 56.6 170 30.6
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 7.1e-06 55.1 217 25.3
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 9.3e-06 54.7 114 38.6
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 9.3e-06 54.7 72 51.4


User provided reference genes

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