Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26690 Selenicereus undatus HOM05D002879 ORTHO05D002930 1.6e-66 256.9 191 100.0
EL10Ac1g01570 Beta vulgaris HOM05D002879 ORTHO05D002930 6.7e-17 92.0 49 81.6
FvH4_2g13410 Fragaria vesca HOM05D002879 ORTHO05D002930 9.0e-14 81.6 43 83.7
Thecc.08G154600 Theobroma cacao HOM05D002879 ORTHO05D002930 9.0e-14 81.6 69 60.9
Cfa018310 Carpinus fangiana HOM05D002879 ORTHO05D002930 1.2e-13 81.3 49 79.6
Sc02g0003910 Simmondsia chinensis HOM05D002879 ORTHO05D002930 1.5e-13 80.9 65 64.6
PGSC0003DMG400006662 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.5e-13 80.9 49 75.5
vmacro12405 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.0e-13 80.5 52 71.2
AUR62026686 Chenopodium quinoa HOM05D002879 ORTHO05D002930 2.6e-13 80.1 59 66.1
Solyc04g071610.4 Solanum lycopersicum HOM05D002879 ORTHO05D002930 2.6e-13 80.1 49 75.5
Sopen04g027590 Solanum pennellii HOM05D002879 ORTHO05D002930 2.6e-13 80.1 49 75.5
EL10Ac1g01569 Beta vulgaris HOM05D002879 ORTHO05D038231 5.8e-13 79.0 207 40.1
CAN.G264.3 Capsicum annuum HOM05D002879 ORTHO05D002930 1.7e-12 77.4 49 73.5
PGSC0003DMG400006661 Solanum tuberosum HOM05D002879 ORTHO05D002930 2.9e-12 76.6 69 58.0
Atru.chr13.2082 Acer truncatum HOM05D002879 ORTHO05D002930 3.8e-12 76.3 70 54.3
arahy.Tifrunner.gnm1.ann1.MV46JJ Arachis hypogaea HOM05D002879 ORTHO05D002930 3.8e-12 76.3 62 66.1
Os02g0543000 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 3.8e-12 76.3 42 81.0
Peaxi162Scf00599g00009 Petunia axillaris HOM05D002879 ORTHO05D002930 3.8e-12 76.3 48 75.0
vmacro01468 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.8e-12 76.3 75 57.3
arahy.Tifrunner.gnm1.ann1.4DJY3R Arachis hypogaea HOM05D002879 ORTHO05D002930 4.9e-12 75.9 52 69.2
CAN.G264.2 Capsicum annuum HOM05D002879 ORTHO05D002930 4.9e-12 75.9 48 75.0
Nitab4.5_0002764g0050 Nicotiana tabacum HOM05D002879 ORTHO05D002930 4.9e-12 75.9 43 79.1
Rhsim11G0085000 Rhododendron simsii HOM05D002879 ORTHO05D002930 4.9e-12 75.9 68 61.8
Nitab4.5_0001187g0070 Nicotiana tabacum HOM05D002879 ORTHO05D002930 6.4e-12 75.5 43 79.1
vmacro01469 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 8.4e-12 75.1 73 53.4
Migut.C00983 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.1e-11 74.7 43 76.7
THA.LOC104809205 Tarenaya hassleriana HOM05D002879 ORTHO05D002930 1.1e-11 74.7 43 76.7
Hund17173 Selenicereus undatus HOM05D002879 ORTHO05D002930 1.4e-11 74.3 48 72.9
Glyma.10G224300 Glycine max HOM05D002879 ORTHO05D002930 1.9e-11 73.9 53 67.9
Hund26910 Selenicereus undatus HOM05D002879 ORTHO05D002930 2.4e-11 73.6 47 74.5
Solyc04g071580.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 2.4e-11 73.6 43 76.7
Migut.I00192 Erythranthe guttata HOM05D002879 ORTHO05D002930 3.2e-11 73.2 43 74.4
Nitab4.5_0001187g0090 Nicotiana tabacum HOM05D002879 ORTHO05D002930 3.2e-11 73.2 43 76.7
QL02p029929 Quercus lobata HOM05D002879 ORTHO05D002930 3.2e-11 73.2 65 58.5
Migut.N01983 Erythranthe guttata HOM05D002879 ORTHO05D002930 4.2e-11 72.8 47 70.2
Haze_17772 Corylus avellana HOM05D002879 ORTHO05D002930 5.5e-11 72.4 50 70.0
Nitab4.5_0002764g0010 Nicotiana tabacum HOM05D002879 ORTHO05D002930 5.5e-11 72.4 43 74.4
PGSC0003DMG400024093 Solanum tuberosum HOM05D002879 ORTHO05D002930 5.5e-11 72.4 43 74.4
Ah.05g168060 Amaranthus hybridus HOM05D002879 ORTHO05D002930 7.1e-11 72.0 72 52.8
CSS0043717 Camellia sinensis var. sinensis HOM05D002879 ORTHO05D002930 7.1e-11 72.0 47 70.2
AUR62040595 Chenopodium quinoa HOM05D002879 ORTHO05D002930 7.1e-11 72.0 43 74.4
Peaxi162Scf01294g00118 Petunia axillaris HOM05D002879 ORTHO05D002930 9.3e-11 71.6 44 72.7
AUR62026685 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.2e-10 71.2 48 68.8
Peaxi162Scf00599g00115 Petunia axillaris HOM05D002879 ORTHO05D002930 1.2e-10 71.2 43 74.4
EL10Ac1g01576 Beta vulgaris HOM05D002879 ORTHO05D002930 1.6e-10 70.9 43 74.4
EL10Ac1g01577 Beta vulgaris HOM05D002879 ORTHO05D002930 1.6e-10 70.9 73 50.7
Sopen04g027560 Solanum pennellii HOM05D002879 ORTHO05D002930 1.6e-10 70.9 43 72.1
Rhsim11G0085100 Rhododendron simsii HOM05D002879 ORTHO05D002930 2.1e-10 70.5 73 49.3
TAR625G0963 Trochodendron aralioides HOM05D002879 ORTHO05D002930 2.1e-10 70.5 69 50.7
Actinidia29536 Actinidia chinensis HOM05D002879 ORTHO05D002930 3.5e-10 69.7 50 66.0
Haze_17773 Corylus avellana HOM05D002879 ORTHO05D002930 3.5e-10 69.7 50 68.0
Actinidia17783 Actinidia chinensis HOM05D002879 ORTHO05D002930 4.6e-10 69.3 63 57.1
CAN.G264.1 Capsicum annuum HOM05D002879 ORTHO05D002930 4.6e-10 69.3 48 66.7
Ah.05g168050 Amaranthus hybridus HOM05D002879 ORTHO05D002930 6.0e-10 68.9 48 66.7
Migut.C00982 Erythranthe guttata HOM05D002879 ORTHO05D002930 6.0e-10 68.9 43 67.4
Migut.N02014 Erythranthe guttata HOM05D002879 ORTHO05D002930 6.0e-10 68.9 40 75.0
Solyc04g071600.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 6.0e-10 68.9 43 69.8
PGSC0003DMG400006663 Solanum tuberosum HOM05D002879 ORTHO05D002930 6.0e-10 68.9 43 69.8
HPP92_009298 Vanilla planifolia HOM05D002879 ORTHO05D002930 6.0e-10 68.9 57 59.6
Ca_23081_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 7.9e-10 68.6 48 64.6
Sc26g0002520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 7.9e-10 68.6 47 66.0
Lalb_Chr03g0035371 Lupinus albus HOM05D002879 ORTHO05D002930 1.0e-09 68.2 50 64.0
Rhsim11G0084200 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.0e-09 68.2 72 50.0
SEGI_09931 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 1.3e-09 67.8 68 51.5
Solyc04g071590.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.3e-09 67.8 43 67.4
Sopen04g027570 Solanum pennellii HOM05D002879 ORTHO05D002930 1.3e-09 67.8 43 67.4
TAR625G0538 Trochodendron aralioides HOM05D002879 ORTHO05D002930 1.3e-09 67.8 69 50.7
Actinidia04759 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.8e-09 67.4 51 62.7
SEGI_40905 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 1.8e-09 67.4 56 58.9
MBI09_g23868_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 2.3e-09 67.0 69 55.1
Sc26g0002500 Simmondsia chinensis HOM05D002879 ORTHO05D002930 3.0e-09 66.6 44 72.7
vmacro12406 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.0e-09 66.6 66 59.1
arahy.Tifrunner.gnm1.ann1.HS8YG8 Arachis hypogaea HOM05D002879 ORTHO05D002930 3.9e-09 66.2 43 74.4
vmacro23421 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.9e-09 66.2 43 67.4
Sc26g0002530 Simmondsia chinensis HOM05D002879 ORTHO05D002930 5.1e-09 65.9 63 57.1
vmacro01464 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.7e-09 65.5 72 48.6
vmacro23419 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.7e-09 65.5 72 48.6
Ciclev10002644m.g Citrus clementina HOM05D002879 ORTHO05D002930 8.7e-09 65.1 53 62.3
AUR62040599 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.1e-08 64.7 73 53.4
Haze_17769 Corylus avellana HOM05D002879 ORTHO05D002930 1.1e-08 64.7 50 66.0
Migut.N01982 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.1e-08 64.7 39 71.8
Migut.N02015 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.1e-08 64.7 39 71.8
Lj5g0010855 Lotus japonicus HOM05D002879 ORTHO05D002930 1.1e-08 64.7 43 65.1
TPR.G22164 Trifolium pratense HOM05D002879 ORTHO05D002930 1.1e-08 64.7 43 65.1
Actinidia29538 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.5e-08 64.3 42 71.4
TWI34G0242 Tripterygium wilfordii HOM05D002879 ORTHO05D002930 1.5e-08 64.3 68 50.0
Aqoxy5G02058 Aquilegia oxysepala HOM05D002879 ORTHO05D002930 2.5e-08 63.5 74 47.3
Potri.005G193901 Populus trichocarpa HOM05D002879 ORTHO05D002930 2.5e-08 63.5 48 60.4
Eucgr.E02063 Eucalyptus grandis HOM05D002879 ORTHO05D002930 4.3e-08 62.8 47 63.8
Sopen04g027580 Solanum pennellii HOM05D002879 ORTHO05D002930 4.3e-08 62.8 41 65.9
FAN24G2761 Fragaria x ananassa HOM05D002879 ORTHO05D002930 7.4e-08 62.0 43 65.1
SEGI_08871 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 7.4e-08 62.0 60 56.7
Zm00001eb263060 Zea mays HOM05D002879 ORTHO05D002930 7.4e-08 62.0 62 50.0
Rhsim11G0084700 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.3e-07 61.2 43 62.8
Medtr1g098680 Medicago truncatula HOM05D002879 ORTHO05D002930 2.1e-07 60.5 43 62.8
Sc26g0003520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 2.1e-07 60.5 39 69.2
Oeu046047.1 Olea europaea HOM05D002879 ORTHO05D002930 3.7e-07 59.7 39 64.1
vmacro02690 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.7e-07 59.7 43 67.4
Rhsim11G0084300 Rhododendron simsii HOM05D002879 ORTHO05D002930 4.8e-07 59.3 43 62.8
Rhsim11G0084400 Rhododendron simsii HOM05D002879 ORTHO05D002930 4.8e-07 59.3 43 62.8
arahy.Tifrunner.gnm1.ann1.4FY7U3 Arachis hypogaea HOM05D002879 ORTHO05D002930 6.2e-07 58.9 43 65.1
Lsat_1_v5_gn_9_41200 Lactuca sativa HOM05D002879 ORTHO05D002930 6.2e-07 58.9 50 56.0
Potri.005G193800 Populus trichocarpa HOM05D002879 ORTHO05D002930 6.2e-07 58.9 43 58.1
AUR62026684 Chenopodium quinoa HOM05D002879 ORTHO05D002930 8.1e-07 58.5 48 58.3
Eucgr.E02068 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.1e-06 58.2 47 57.4
Rhsim11G0084100 Rhododendron simsii HOM05D000132 ORTHO05D000058 1.1e-06 58.2 43 62.8
Os01g0959100 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 1.8e-06 57.4 35 65.7
Zm00001eb362480 Zea mays HOM05D002879 ORTHO05D002930 1.8e-06 57.4 77 42.9
AUR62014501 Chenopodium quinoa HOM05D002879 ORTHO05D002930 2.4e-06 57.0 49 59.2
AUR62026683 Chenopodium quinoa HOM05D002879 ORTHO05D002930 2.4e-06 57.0 66 51.5
Rhsim11G0084500 Rhododendron simsii HOM05D002879 ORTHO05D002930 2.4e-06 57.0 60 48.3
AUR62035549 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.1e-06 56.6 49 59.2
AUR62038034 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.1e-06 56.6 49 59.2
AUR62038037 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.1e-06 56.6 49 59.2
Nitab4.5_0001187g0080 Nicotiana tabacum HOM05D002879 ORTHO05D002930 3.1e-06 56.6 44 61.4
vmacro01467 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.1e-06 56.6 43 58.1
vmacro02689 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.1e-06 56.6 43 65.1
AUR62014500 Chenopodium quinoa HOM05D002879 ORTHO05D002930 4.0e-06 56.2 46 60.9
AUR62038035 Chenopodium quinoa HOM05D002879 ORTHO05D002930 4.0e-06 56.2 46 60.9
AUR62038038 Chenopodium quinoa HOM05D002879 ORTHO05D002930 4.0e-06 56.2 46 60.9
EL10Ac1g00648 Beta vulgaris HOM05D002879 ORTHO05D002930 5.3e-06 55.8 50 56.0
CiPaw.16G010900 Carya illinoinensis HOM05D002879 ORTHO05D002930 5.3e-06 55.8 72 44.4
Sc26g0002490 Simmondsia chinensis HOM05D002879 ORTHO05D002930 6.9e-06 55.5 48 56.2
Dinv41066 Davidia involucrata HOM05D002879 ORTHO05D002930 9.0e-06 55.1 73 45.2
Manes.02G180800 Manihot esculenta HOM05D002879 ORTHO05D002930 9.0e-06 55.1 42 57.1
TPR.G31183 Trifolium pratense HOM05D002879 ORTHO05D002930 9.0e-06 55.1 43 60.5


User provided reference genes

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