Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26669 Selenicereus undatus HOM05D000247 ORTHO05D008926 1.2e-95 353.2 188 100.0
Ah.15g091910 Amaranthus hybridus HOM05D000247 ORTHO05D008926 1.6e-34 150.2 201 49.8
Sc24g0002990 Simmondsia chinensis HOM05D000247 ORTHO05D008926 6.6e-25 118.2 187 44.9
FAN16G3275 Fragaria x ananassa HOM05D000247 ORTHO05D008926 1.9e-24 116.7 127 50.4
FAN25G3094 Fragaria x ananassa HOM05D000247 ORTHO05D008926 1.9e-24 116.7 127 50.4
RcHm_v2.0_Chr5g0020681 Rosa chinensis HOM05D000247 ORTHO05D008926 1.9e-24 116.7 170 44.7
Nitab4.5_0000443g0110 Nicotiana tabacum HOM05D000247 ORTHO05D008926 4.7e-23 112.1 151 44.4
MSTRG.7604 Avicennia marina HOM05D000247 ORTHO05D008926 8.1e-23 111.3 122 50.8
TAR627G0960 Trochodendron aralioides HOM05D000247 ORTHO05D008926 1.1e-22 110.9 192 40.6
FvH4_3g12700 Fragaria vesca HOM05D000247 ORTHO05D008926 1.8e-22 110.2 118 50.8
FAN16G1213 Fragaria x ananassa HOM05D000247 ORTHO05D008926 1.8e-22 110.2 120 50.0
CiPaw.09G073900 Carya illinoinensis HOM05D000247 ORTHO05D008926 6.9e-22 108.2 212 42.5
CDE06G1703 Ceratophyllum demersum HOM05D000247 ORTHO05D008926 6.9e-22 108.2 179 38.5
Hma1.2p1_1207F.1_g267030 Hydrangea macrophylla HOM05D000247 ORTHO05D008926 9.0e-22 107.8 120 48.3
CAN.G1299.10 Capsicum annuum HOM05D000247 ORTHO05D008926 1.5e-21 107.1 168 40.5
Solyc02g068500.3 Solanum lycopersicum HOM05D000247 ORTHO05D008926 1.5e-21 107.1 141 46.1
Sopen02g017640 Solanum pennellii HOM05D000247 ORTHO05D008926 1.5e-21 107.1 141 46.1
PGSC0003DMG402010449 Solanum tuberosum HOM05D000247 ORTHO05D008926 2.6e-21 106.3 141 44.7
GSVIVG01012129001 Vitis vinifera HOM05D000247 ORTHO05D008926 1.7e-20 103.6 194 41.2
GSVIVG01012130001 Vitis vinifera HOM05D000247 ORTHO05D008926 1.7e-20 103.6 194 41.2
Lsat_1_v5_gn_8_117960 Lactuca sativa HOM05D000247 ORTHO05D008926 3.8e-20 102.4 152 40.8
Atru.chr10.414 Acer truncatum HOM05D000247 ORTHO05D008926 4.9e-20 102.1 184 41.8
Migut.M02000 Erythranthe guttata HOM05D000247 ORTHO05D008926 1.4e-19 100.5 168 43.5
BcaC02g07742 Brassica carinata HOM05D000247 ORTHO05D008926 3.2e-19 99.4 177 39.0
DCAR_001289 Daucus carota HOM05D000247 ORTHO05D008926 4.2e-19 99.0 135 41.5
Manes.03G075166 Manihot esculenta HOM05D000247 ORTHO05D008926 4.2e-19 99.0 179 39.1
SGA_v2.0_scaffold175G39349 Striga asiatica HOM05D000247 ORTHO05D008926 9.3e-19 97.8 146 42.5
unitig_748.g8074 Utricularia gibba HOM05D000247 ORTHO05D008926 1.2e-18 97.4 137 43.1
AL4G31030 Arabidopsis lyrata HOM05D000247 ORTHO05D008926 2.1e-18 96.7 191 36.6
Cc09_g05440 Coffea canephora HOM05D000247 ORTHO05D008926 3.5e-18 95.9 122 45.9
HanXRQChr09g0258391 Helianthus annuus HOM05D000247 ORTHO05D008926 6.0e-18 95.1 171 39.8
Ciclev10016549m.g Citrus clementina HOM05D000247 ORTHO05D008926 7.8e-18 94.7 183 37.7
SGA_v2.0_scaffold298G47701 Striga asiatica HOM05D000247 ORTHO05D008926 7.8e-18 94.7 127 43.3
AT2G35010 Arabidopsis thaliana HOM05D000247 ORTHO05D008926 3.0e-17 92.8 191 36.1
CANSAT35G1610 Cannabis sativa HOM05D000247 ORTHO05D008926 3.0e-17 92.8 119 45.4
Nitab4.5_0007772g0020 Nicotiana tabacum HOM05D000247 ORTHO05D008926 3.0e-17 92.8 73 58.9
THA.LOC104798563 Tarenaya hassleriana HOM05D000247 ORTHO05D008926 3.0e-17 92.8 170 39.4
Aa31LG2G14990 Aethionema arabicum HOM05D000247 ORTHO05D008926 3.9e-17 92.4 176 37.5
arahy.Tifrunner.gnm1.ann1.LMJ0T6 Arachis hypogaea HOM05D000247 ORTHO05D008926 5.1e-17 92.0 202 39.6
arahy.Tifrunner.gnm1.ann1.N4QHWM Arachis hypogaea HOM05D000247 ORTHO05D008926 5.1e-17 92.0 202 39.6
Potri.001G159000 Populus trichocarpa HOM05D000247 ORTHO05D008926 6.6e-17 91.7 182 35.2
BraA04t18174Z Brassica rapa HOM05D000247 ORTHO05D008926 1.1e-16 90.9 182 37.9
HPP92_009500 Vanilla planifolia HOM05D000247 ORTHO05D008926 1.5e-16 90.5 200 36.5
MD10G1228900 Malus domestica HOM05D000247 ORTHO05D008926 1.9e-16 90.1 179 38.5
CsaV3_6G052830 Cucumis sativus L. HOM05D000247 ORTHO05D008926 3.3e-16 89.4 128 43.8
MELO3C007026.2 Cucumis melo HOM05D000247 ORTHO05D008926 7.3e-16 88.2 121 43.0
Thhalv10017264m.g Eutrema salsugineum HOM05D000247 ORTHO05D008926 7.3e-16 88.2 173 37.0
MD17G1134000 Malus domestica HOM05D000247 ORTHO05D008926 7.3e-16 88.2 184 37.0
SalBow8G0825 Salvia bowleyana HOM05D032565 ORTHO05D008926 9.6e-16 87.8 73 57.5
Glyma.05G132600 Glycine max HOM05D000247 ORTHO05D008926 1.3e-15 87.4 201 37.3
Sp4g17290 Schrenkiella parvula HOM05D000247 ORTHO05D008926 2.1e-15 86.7 190 34.2
Sed0006578 Sechium edule HOM05D000247 ORTHO05D008926 2.8e-15 86.3 199 34.7
Carub.0004s1670 Capsella rubella HOM05D000247 ORTHO05D008926 3.6e-15 85.9 190 34.7
Glyma.08G087100 Glycine max HOM05D000247 ORTHO05D008926 4.8e-15 85.5 176 35.2
Prupe.4G115800 Prunus persica HOM05D000247 ORTHO05D008926 4.8e-15 85.5 196 35.2
CARHR129170 Cardamine hirsuta HOM05D000247 ORTHO05D008926 6.2e-15 85.1 122 39.3
CARHR030550 Cardamine hirsuta HOM05D000247 ORTHO05D008926 1.1e-14 84.3 121 39.7
Nn7g38276 Nelumbo nucifera HOM05D000247 ORTHO05D008926 1.1e-14 84.3 199 31.7
Sp1g26880 Schrenkiella parvula HOM05D000247 ORTHO05D008926 2.4e-14 83.2 121 39.7
Thhalv10008976m.g Eutrema salsugineum HOM05D000247 ORTHO05D008926 3.1e-14 82.8 121 39.7
Thecc.02G276000 Theobroma cacao HOM05D000247 ORTHO05D008926 4.0e-14 82.4 119 42.0
Psat7g088680 Pisum sativum HOM05D000247 ORTHO05D008926 5.3e-14 82.0 177 35.0
AL1G45430 Arabidopsis lyrata HOM05D000247 ORTHO05D008926 6.9e-14 81.6 121 39.7
AT1G31020 Arabidopsis thaliana HOM05D000247 ORTHO05D008926 6.9e-14 81.6 121 39.7
PSO541G6344 Papaver somniferum HOM05D000247 ORTHO05D008926 6.9e-14 81.6 117 39.3
Phvul.002G190200 Phaseolus vulgaris HOM05D000247 ORTHO05D008926 6.9e-14 81.6 199 34.7
TPR.G31242 Trifolium pratense HOM05D000247 ORTHO05D008926 6.9e-14 81.6 174 35.6
DCAR_007780 Daucus carota HOM05D000247 ORTHO05D008926 9.0e-14 81.3 73 54.8
Lj4g0027483 Lotus japonicus HOM05D000247 ORTHO05D008926 9.0e-14 81.3 201 34.3
ClCG01G025600 Citrullus lanatus HOM05D000247 ORTHO05D008926 1.2e-13 80.9 210 34.8
FAN21G2895 Fragaria x ananassa HOM05D000247 ORTHO05D008926 1.5e-13 80.5 118 40.7
Medtr4g094690 Medicago truncatula HOM05D000247 ORTHO05D008926 2.0e-13 80.1 173 35.3
SHI32269 Sapria himalayana HOM05D000247 ORTHO05D008926 2.0e-13 80.1 112 38.4
Dinv04337 Davidia involucrata HOM05D000247 ORTHO05D008926 2.6e-13 79.7 199 33.7
PSO675G8821 Papaver somniferum HOM05D000247 ORTHO05D008926 2.6e-13 79.7 209 34.9
BcaC05g27133 Brassica carinata HOM05D000247 ORTHO05D008926 3.4e-13 79.3 136 36.0
BcaB07g32760 Brassica carinata HOM05D000267 ORTHO05D008926 4.5e-13 79.0 121 38.0
Carub.0001s2941 Capsella rubella HOM05D000247 ORTHO05D008926 4.5e-13 79.0 121 38.0
Eucgr.D00028 Eucalyptus grandis HOM05D000247 ORTHO05D008926 4.5e-13 79.0 122 39.3
Zm00001eb389850 Zea mays HOM05D000247 ORTHO05D008926 4.5e-13 79.0 174 36.2
BraA09t39048Z Brassica rapa HOM05D000247 ORTHO05D008926 5.8e-13 78.6 136 35.3
Os06g0665900 Oryza sativa ssp. japonica HOM05D000247 ORTHO05D008926 5.8e-13 78.6 120 39.2
Rhsim13G0129200 Rhododendron simsii HOM05D000247 ORTHO05D008926 5.8e-13 78.6 150 34.7
A09p35210 Brassica napus HOM05D000247 ORTHO05D008926 7.6e-13 78.2 136 35.3
C05p30180 Brassica napus HOM05D000247 ORTHO05D008926 7.6e-13 78.2 136 35.3
BolC5t31755H Brassica oleracea HOM05D000247 ORTHO05D008926 7.6e-13 78.2 136 35.3
Gohir.A03G128000 Gossypium hirsutum HOM05D000247 ORTHO05D008926 2.2e-12 76.6 118 37.3
Lalb_Chr07g0188361 Lupinus albus HOM05D000247 ORTHO05D008926 2.9e-12 76.3 111 37.8
TWI38G1568 Tripterygium wilfordii HOM05D000247 ORTHO05D008926 1.9e-11 73.6 72 47.2
Peaxi162Scf00199g00089 Petunia axillaris HOM05D000247 ORTHO05D008926 7.1e-11 71.6 221 28.1
BcaB06g28813 Brassica carinata HOM05D000247 ORTHO05D008926 9.3e-11 71.2 190 35.8
Aqoxy5G00005 Aquilegia oxysepala HOM05D000247 ORTHO05D008926 1.2e-10 70.9 69 53.6
Gohir.D02G151400 Gossypium hirsutum HOM05D000247 ORTHO05D008926 1.2e-10 70.9 181 33.7
Gorai.005G169900 Gossypium raimondii HOM05D000247 ORTHO05D008926 1.6e-10 70.5 184 32.1
AUR62040480 Chenopodium quinoa HOM05D000247 ORTHO05D008926 2.1e-10 70.1 84 46.4
MBI02_g26994_MAGBIO Magnolia biondii HOM05D000247 ORTHO05D008926 2.1e-10 70.1 194 36.1
PGR004G1671 Punica granatum HOM05D000247 ORTHO05D008926 1.0e-09 67.8 169 33.7
COL.COLO4_12826 Corchorus olitorius HOM05D000247 ORTHO05D008926 3.9e-09 65.9 170 29.4
C04p64110 Brassica napus HOM05D007600 ORTHO05D009132 9.6e-08 61.2 151 35.8
QL11p013075 Quercus lobata HOM05D000247 ORTHO05D008926 1.3e-07 60.8 51 56.9
MD05G1092600 Malus domestica HOM05D000247 ORTHO05D008926 3.7e-07 59.3 73 45.2
arahy.Tifrunner.gnm1.ann1.ZI5CY8 Arachis hypogaea HOM05D001920 ORTHO05D004895 4.8e-07 58.9 107 34.6
A04p26690 Brassica napus HOM05D007600 ORTHO05D009132 8.1e-07 58.2 154 35.1
Duzib251G0091 Durio zibethinus HOM05D000247 ORTHO05D008926 1.1e-06 57.8 198 31.3
Hund06725 Selenicereus undatus HOM05D000247 ORTHO05D003114 4.0e-06 55.8 65 47.7
Haze_06153 Corylus avellana HOM05D000247 ORTHO05D008926 9.0e-06 54.7 72 43.1


User provided reference genes

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