Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 0.0e+00 2337.4 1196 100.0
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1575.1 1211 69.0
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1563.1 1090 73.9
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1511.5 1092 71.8
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1481.5 1284 63.2
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 0.0e+00 1427.9 1259 63.0
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 0.0e+00 1406.0 1242 62.3
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1389.8 1249 61.5
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 0.0e+00 1383.6 1123 65.4
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 0.0e+00 1382.5 1257 61.0
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1378.2 1246 61.5
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 0.0e+00 1377.8 1227 62.1
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 0.0e+00 1376.7 1237 61.8
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1375.9 1239 61.3
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 0.0e+00 1366.7 1238 61.5
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 0.0e+00 1362.8 1227 62.0
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 0.0e+00 1355.9 1225 61.2
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1355.1 1209 61.3
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 0.0e+00 1354.0 1252 60.9
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1347.0 1244 60.1
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 0.0e+00 1341.6 1246 60.5
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 0.0e+00 1339.3 1227 60.6
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1339.3 1204 61.2
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 0.0e+00 1338.9 1229 60.1
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 0.0e+00 1337.4 1244 59.6
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1337.0 1242 60.4
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1335.9 1250 59.9
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 0.0e+00 1332.0 1253 59.9
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 0.0e+00 1331.2 1231 59.5
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 0.0e+00 1326.6 1233 60.3
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1325.8 1226 59.6
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 0.0e+00 1325.5 1231 59.3
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 0.0e+00 1324.7 1247 60.1
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 0.0e+00 1322.4 1254 60.6
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 0.0e+00 1321.6 1233 58.9
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 0.0e+00 1318.1 1170 60.8
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 0.0e+00 1307.7 1257 58.2
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 0.0e+00 1305.0 1233 59.8
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 0.0e+00 1304.3 1243 59.3
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 0.0e+00 1300.4 1243 59.7
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 0.0e+00 1300.4 1248 59.2
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 0.0e+00 1298.5 1241 58.7
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 0.0e+00 1294.6 1244 59.6
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 0.0e+00 1293.5 1251 58.4
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 0.0e+00 1293.1 1261 58.2
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 0.0e+00 1292.7 1189 59.4
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 0.0e+00 1290.8 1238 59.7
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1290.0 1238 59.7
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 0.0e+00 1288.9 1215 60.7
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 0.0e+00 1287.3 1185 60.3
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 0.0e+00 1286.9 1107 61.9
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1284.2 1245 59.3
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1282.3 1122 61.3
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1282.3 1122 61.3
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1282.3 1230 58.9
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1281.9 1242 57.4
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1279.6 1252 58.1
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 0.0e+00 1279.2 1237 59.3
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 0.0e+00 1279.2 1209 60.3
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 0.0e+00 1276.9 1237 59.3
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 0.0e+00 1269.2 1226 58.3
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 0.0e+00 1266.9 1253 57.4
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 0.0e+00 1261.9 1241 58.2
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 0.0e+00 1261.1 1232 58.0
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1248.8 1080 61.8
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1243.0 1192 58.8
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 0.0e+00 1241.5 1230 56.3
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 0.0e+00 1234.9 1206 57.2
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1233.0 1157 58.3
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 0.0e+00 1216.1 1238 56.4
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 0.0e+00 1203.7 980 63.7
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 0.0e+00 1201.8 1247 55.2
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1193.7 947 66.6
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1187.6 1191 56.1
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 0.0e+00 1185.2 975 63.3
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 0.0e+00 1182.2 979 62.5
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1181.8 1256 53.9
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 0.0e+00 1173.3 1248 55.1
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1169.8 976 63.5
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1157.5 1045 62.5
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1153.7 971 62.4
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 0.0e+00 1153.3 996 61.5
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 0.0e+00 1150.6 972 62.8
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1142.1 1128 56.9
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 0.0e+00 1138.3 972 62.0
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 0.0e+00 1133.6 1026 60.7
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 0.0e+00 1110.5 1215 54.2
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1108.6 1089 56.7
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1099.7 1017 59.4
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1099.0 1168 53.3
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1096.6 1168 52.9
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 0.0e+00 1092.0 1150 53.0
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 4.1e-311 1071.6 969 58.5
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 1.3e-304 1050.0 1213 51.8
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 6.2e-302 1041.2 1032 57.6
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 4.2e-290 1001.9 894 60.3
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 1.3e-272 943.7 1127 50.2
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 1.4e-261 907.1 1013 53.0
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 6.3e-222 775.4 1128 42.2
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 1.5e-218 764.2 846 52.5
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 6.1e-217 758.8 1101 42.7
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 1.5e-207 727.6 1196 39.8
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 4.1e-197 693.0 1251 42.4
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 5.2e-192 676.0 1112 39.1
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.4e-168 598.2 596 53.7
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 2.0e-167 594.3 735 47.2
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 8.4e-166 589.0 550 56.5
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 1.0e-158 565.5 652 51.7
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 1.4e-152 545.0 465 60.4
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 4.1e-112 410.6 1382 28.4
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 2.3e-99 368.2 336 58.6
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 2.3e-99 368.2 336 58.6
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 2.3e-99 368.2 336 58.6
MSTRG.22273 Avicennia marina HOM05D004348 ORTHO05D006191 5.2e-91 340.5 316 57.3
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 1.2e-74 286.2 156 84.0
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 2.6e-74 285.0 227 62.6
Lsat_1_v5_gn_3_76560 Lactuca sativa HOM05D004348 ORTHO05D006191 3.2e-72 278.1 237 61.6
Lsat_1_v5_gn_4_501 Lactuca sativa HOM05D004348 ORTHO05D006191 3.2e-72 278.1 237 61.6
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 4.6e-71 274.2 160 79.4
Lsat_1_v5_gn_2_12981 Lactuca sativa HOM05D004348 ORTHO05D006191 9.6e-69 266.5 259 55.6
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 2.8e-68 265.0 157 75.8
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 2.4e-64 251.9 194 63.4
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 2.6e-58 231.9 128 79.7
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 1.2e-55 223.0 124 81.5
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 6.0e-47 194.1 184 60.3
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 3.7e-44 184.9 113 75.2
TPR.G40548 Trifolium pratense HOM05D004348 ORTHO05D006191 5.5e-40 171.0 100 79.0
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 7.2e-40 170.6 280 42.5
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 2.8e-36 158.7 290 35.2
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 9.0e-35 153.7 149 52.3
Aa31LG2G16170 Aethionema arabicum HOM05D004348 ORTHO05D006191 9.4e-32 143.7 246 46.3
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 1.7e-28 132.9 460 28.5
SEGI_03645 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 2.8e-20 105.5 224 37.9
Mapoly0017s0011 Marchantia polymorpha HOM05D004348 ORTHO05D006191 2.4e-19 102.4 185 42.7
Lsat_1_v5_gn_9_67901 Lactuca sativa HOM05D004348 ORTHO05D006191 5.3e-19 101.3 97 57.7
Atru.chr1.1667 Acer truncatum HOM05D004348 ORTHO05D006191 2.9e-17 95.5 124 53.2
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.5e-16 91.3 305 22.6
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.8e-14 86.3 318 24.8
SGA_v2.0_scaffold6G03459 Striga asiatica HOM05D004348 ORTHO05D006191 8.8e-14 84.0 46 80.4
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.3e-13 82.0 304 24.3
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.3e-12 80.1 314 26.1
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.7e-12 79.7 313 26.5
Sp7g06010 Schrenkiella parvula HOM05D004348 ORTHO05D006191 4.8e-12 78.2 81 55.6
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 2.4e-11 75.9 346 22.5
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 2.0e-10 72.8 318 25.2
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.9e-10 71.2 282 22.7
Mapoly0067s0037 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.0e-09 70.5 313 23.3
Mapoly0053s0005 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.5e-08 66.6 324 23.8
SGA_v2.0_scaffold162G37946 Striga asiatica HOM05D004348 ORTHO05D006191 1.5e-08 66.6 39 71.8
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 1.9e-08 66.2 328 25.9
CAN.G371.43 Capsicum annuum HOM05D004348 ORTHO05D006191 4.2e-08 65.1 184 36.4
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 2.1e-07 62.8 100 41.0
GSVIVG01009550001 Vitis vinifera HOM05D004348 ORTHO05D006191 3.6e-07 62.0 54 63.0
Aa31LG2G16190 Aethionema arabicum HOM05D004348 ORTHO05D006191 4.0e-06 58.5 37 70.3


User provided reference genes

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