Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26575 Selenicereus undatus HOM05D006598 ORTHO05D008132 4.8e-199 697.6 342 100.0
AUR62035446 Chenopodium quinoa HOM05D006598 ORTHO05D008132 4.9e-143 511.5 327 76.8
Ah.11g043150 Amaranthus hybridus HOM05D006598 ORTHO05D008132 3.9e-140 501.9 328 75.3
Sc02g0006160 Simmondsia chinensis HOM05D006598 ORTHO05D008132 4.7e-138 495.0 319 73.4
Dinv36084 Davidia involucrata HOM05D006598 ORTHO05D008132 9.2e-134 480.7 334 68.9
Cfa018154 Carpinus fangiana HOM05D006598 ORTHO05D008132 6.0e-133 478.0 332 69.0
QL02p008626 Quercus lobata HOM05D006598 ORTHO05D008132 6.6e-132 474.6 332 68.4
FvH4_2g39790 Fragaria vesca HOM05D006598 ORTHO05D008132 8.6e-132 474.2 330 69.4
FAN27G1472 Fragaria x ananassa HOM05D006598 ORTHO05D008132 8.6e-132 474.2 331 68.9
FAN15G1256 Fragaria x ananassa HOM05D006598 ORTHO05D008132 1.5e-131 473.4 330 69.4
Haze_17965 Corylus avellana HOM05D006598 ORTHO05D008132 1.9e-131 473.0 332 68.4
FAN20G2142 Fragaria x ananassa HOM05D006598 ORTHO05D008132 3.3e-131 472.2 330 69.1
Prupe.1G379200 Prunus persica HOM05D006598 ORTHO05D008132 9.6e-131 470.7 330 68.5
TAR625G1490 Trochodendron aralioides HOM05D006598 ORTHO05D008132 3.6e-130 468.8 332 69.6
CSS0023084 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 1.4e-129 466.8 332 67.8
Atru.chr13.478 Acer truncatum HOM05D006598 ORTHO05D008132 1.8e-129 466.5 332 67.2
Dinv39426 Davidia involucrata HOM05D006598 ORTHO05D008132 1.8e-129 466.5 332 68.1
Ciclev10001322m.g Citrus clementina HOM05D006598 ORTHO05D008132 1.5e-128 463.4 334 67.4
CiPaw.15G078300 Carya illinoinensis HOM05D006598 ORTHO05D008132 2.6e-128 462.6 332 66.6
PSO541G3348 Papaver somniferum HOM05D006598 ORTHO05D008132 7.6e-128 461.1 330 67.0
PSO675G7094 Papaver somniferum HOM05D006598 ORTHO05D008132 2.9e-127 459.1 328 67.4
Actinidia15332 Actinidia chinensis HOM05D006598 ORTHO05D008132 1.1e-126 457.2 334 66.8
Manes.18G026900 Manihot esculenta HOM05D006598 ORTHO05D008132 1.4e-126 456.8 332 67.8
Lj4A39T66 Lonicera japonica HOM05D006598 ORTHO05D008132 2.4e-126 456.1 332 68.4
GSVIVG01009711001 Vitis vinifera HOM05D006598 ORTHO05D008132 2.4e-126 456.1 330 67.9
Potri.002G260300 Populus trichocarpa HOM05D006598 ORTHO05D008132 4.2e-126 455.3 333 66.7
Rhsim07G0239600 Rhododendron simsii HOM05D006598 ORTHO05D008132 7.1e-126 454.5 320 66.9
Sabra02G0198100 Salix brachista HOM05D006598 ORTHO05D008132 1.2e-125 453.8 333 66.4
Aqoxy6G01111 Aquilegia oxysepala HOM05D006598 ORTHO05D008132 1.6e-125 453.4 330 67.0
MBI16_g31005_MAGBIO Magnolia biondii HOM05D006598 ORTHO05D008132 3.5e-125 452.2 334 65.0
Glyma.04G032000 Glycine max HOM05D006598 ORTHO05D008132 7.8e-125 451.1 330 66.1
Actinidia38007 Actinidia chinensis HOM05D006598 ORTHO05D008132 1.3e-124 450.3 331 64.7
Eucgr.F01894 Eucalyptus grandis HOM05D006598 ORTHO05D008132 1.7e-124 449.9 332 67.2
vmacro21641 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 3.9e-124 448.7 334 65.6
arahy.Tifrunner.gnm1.ann1.KF7WGB Arachis hypogaea HOM05D006598 ORTHO05D008132 5.1e-124 448.4 327 66.7
CSS0013932 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 2.5e-123 446.0 325 65.8
CANSAT25G2965 Cannabis sativa HOM05D006598 ORTHO05D008132 2.5e-123 446.0 322 67.1
TWI36G0987 Tripterygium wilfordii HOM05D006598 ORTHO05D008132 4.3e-123 445.3 333 64.6
Glyma.06G032100 Glycine max HOM05D006598 ORTHO05D008132 9.6e-123 444.1 330 65.8
vmacro04528 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 9.6e-123 444.1 319 65.8
arahy.Tifrunner.gnm1.ann1.9Y7K4V Arachis hypogaea HOM05D006598 ORTHO05D008132 1.3e-122 443.7 327 65.4
Ca_15516_v3 Cicer arietinum L. HOM05D006598 ORTHO05D008132 1.3e-122 443.7 330 64.5
Phvul.009G057800 Phaseolus vulgaris HOM05D006598 ORTHO05D008132 1.3e-122 443.7 333 64.3
COL.COLO4_26313 Corchorus olitorius HOM05D006598 ORTHO05D008132 2.1e-122 443.0 331 65.9
Duzib116G0116 Durio zibethinus HOM05D006598 ORTHO05D008132 4.8e-122 441.8 335 64.5
Medtr3g111840 Medicago truncatula HOM05D006598 ORTHO05D008132 6.2e-122 441.4 334 63.8
Cc10_g02850 Coffea canephora HOM05D006598 ORTHO05D008132 1.4e-121 440.3 332 63.3
VMungo1309G1899 Vigna mungo HOM05D006598 ORTHO05D008132 2.4e-121 439.5 333 64.3
TPR.G12344 Trifolium pratense HOM05D006598 ORTHO05D008132 4.0e-121 438.7 334 63.2
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 5.3e-121 438.3 331 64.4
Sed0027447 Sechium edule HOM05D006598 ORTHO05D008132 9.0e-121 437.6 323 66.9
Rhsim06G0033600 Rhododendron simsii HOM05D006598 ORTHO05D008132 2.0e-120 436.4 334 64.1
Cpa.g.sc36.79 Carica papaya HOM05D006598 ORTHO05D008132 2.6e-120 436.0 330 64.2
Migut.C00732 Erythranthe guttata HOM05D006598 ORTHO05D008132 2.6e-120 436.0 331 63.7
Sp2g07390 Schrenkiella parvula HOM05D006598 ORTHO05D008132 5.8e-120 434.9 327 63.9
ECA232G3558 Erigeron canadensis HOM05D006598 ORTHO05D008132 9.9e-120 434.1 335 63.3
A06p48250 Brassica napus HOM05D006598 ORTHO05D008132 4.9e-119 431.8 328 63.1
BraA06t27693Z Brassica rapa HOM05D006598 ORTHO05D008132 4.9e-119 431.8 328 63.1
MSTRG.25174 Avicennia marina HOM05D006598 ORTHO05D008132 8.4e-119 431.0 334 63.8
Lj1g0003551 Lotus japonicus HOM05D006598 ORTHO05D008132 1.4e-118 430.3 309 67.3
AL8G18360 Arabidopsis lyrata HOM05D006598 ORTHO05D008132 4.2e-118 428.7 327 63.9
Psat5g017160 Pisum sativum HOM05D006598 ORTHO05D008132 5.4e-118 428.3 323 63.2
BcaC02g10811 Brassica carinata HOM05D006598 ORTHO05D008132 1.2e-117 427.2 321 63.6
C04p24910 Brassica napus HOM05D006598 ORTHO05D008132 1.2e-117 427.2 321 63.6
BolC4t23991H Brassica oleracea HOM05D006598 ORTHO05D008132 1.2e-117 427.2 321 63.6
TAR628G1208 Trochodendron aralioides HOM05D006598 ORTHO05D008132 1.6e-117 426.8 308 66.9
Thhalv10003240m.g Eutrema salsugineum HOM05D006598 ORTHO05D008132 2.7e-117 426.0 321 63.6
Aa31LG9G12810 Aethionema arabicum HOM05D006598 ORTHO05D008132 4.6e-117 425.2 321 64.2
Lsat_1_v5_gn_4_119301 Lactuca sativa HOM05D006598 ORTHO05D008132 7.9e-117 424.5 327 64.5
BcaC06g31749 Brassica carinata HOM05D006598 ORTHO05D008132 1.3e-116 423.7 327 62.1
CARHR181720 Cardamine hirsuta HOM05D006598 ORTHO05D008132 2.3e-116 422.9 321 62.6
Nitab4.5_0010510g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 3.0e-116 422.5 313 63.6
PGSC0003DMG400003679 Solanum tuberosum HOM05D006598 ORTHO05D008132 3.0e-116 422.5 313 62.9
SalBow7G0748 Salvia bowleyana HOM05D006598 ORTHO05D008132 5.1e-116 421.8 335 61.8
CAN.G1226.16 Capsicum annuum HOM05D006598 ORTHO05D008132 6.7e-116 421.4 313 62.6
CDE04G2166 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 3.3e-115 419.1 331 60.4
Nitab4.5_0006280g0060 Nicotiana tabacum HOM05D006598 ORTHO05D008132 5.6e-115 418.3 310 64.2
THA.LOC104806941 Tarenaya hassleriana HOM05D006598 ORTHO05D008132 9.6e-115 417.5 323 63.5
Carub.0008s0618 Capsella rubella HOM05D006598 ORTHO05D008132 3.7e-114 415.6 328 62.2
AT5G42760 Arabidopsis thaliana HOM05D006598 ORTHO05D008132 4.8e-114 415.2 318 63.2
Solyc04g080380.3 Solanum lycopersicum HOM05D006598 ORTHO05D008132 4.8e-114 415.2 313 62.3
Sopen04g033970 Solanum pennellii HOM05D006598 ORTHO05D008132 4.8e-114 415.2 313 62.6
HPP92_018806 Vanilla planifolia HOM05D006598 ORTHO05D008132 7.6e-112 407.9 337 58.2
Lalb_Chr11g0062331 Lupinus albus HOM05D006598 ORTHO05D008132 2.1e-109 399.8 332 61.1
SGA_v2.0_scaffold54G19518 Striga asiatica HOM05D006598 ORTHO05D008132 6.0e-109 398.3 320 61.2
Thecc.08G027000 Theobroma cacao HOM05D006598 ORTHO05D008132 2.3e-108 396.4 335 60.6
ATR0810G155 Amborella trichopoda HOM05D006598 ORTHO05D008132 4.3e-107 392.1 323 58.5
Oeu049953.1 Olea europaea HOM05D006598 ORTHO05D008132 2.5e-102 376.3 332 56.6
Nitab4.5_0005730g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.1e-97 360.9 322 56.8
Os03g0775000 Oryza sativa ssp. japonica HOM05D006598 ORTHO05D008132 6.9e-97 358.2 304 57.9
Zm00001eb059150 Zea mays HOM05D006598 ORTHO05D008132 6.9e-97 358.2 304 56.9
SEGI_39292 Sequoiadendron giganteum HOM05D006598 ORTHO05D008132 1.4e-94 350.5 318 57.2
CDE06G0448 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 7.4e-91 338.2 282 58.9
AagrBONN_evm.TU.Sc2ySwM_228.3129 Anthoceros agrestis HOM05D006598 ORTHO05D008132 6.9e-81 305.1 318 49.1
TAR381G1379 Trochodendron aralioides HOM05D006598 ORTHO05D008132 4.5e-80 302.4 205 70.2
Pp3c8_2950 Physcomitrium patens HOM05D006598 ORTHO05D008132 8.0e-77 291.6 309 50.5
Pp3c4_6590 Physcomitrium patens HOM05D006598 ORTHO05D008132 2.2e-74 283.5 305 48.9
HPP92_018704 Vanilla planifolia HOM05D006598 ORTHO05D008132 4.1e-73 279.3 261 53.6
AUR62039547 Chenopodium quinoa HOM05D006598 ORTHO05D008132 1.3e-71 274.2 251 60.2
Nitab4.5_0001091g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 7.2e-70 268.5 203 63.5
Nn5g29606 Nelumbo nucifera HOM05D006598 ORTHO05D008132 3.6e-69 266.2 213 64.3
CSS0023478 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 3.2e-62 243.0 157 73.2
HanXRQChr16g0508491 Helianthus annuus HOM05D006598 ORTHO05D008132 1.6e-61 240.7 205 60.0
HPP92_018786 Vanilla planifolia HOM05D006598 ORTHO05D008132 4.4e-59 232.6 161 67.7
unitig_46.g17936 Utricularia gibba HOM05D006598 ORTHO05D008132 9.8e-59 231.5 177 61.0
FAN20G3016 Fragaria x ananassa HOM05D006598 ORTHO05D008132 1.3e-55 221.1 132 76.5
Actinidia29823 Actinidia chinensis HOM05D006598 ORTHO05D008132 5.7e-51 205.7 156 64.7
Pp3c12_23400 Physcomitrium patens HOM05D006598 ORTHO05D008132 2.1e-45 187.2 285 40.0
TAR381G0844 Trochodendron aralioides HOM05D006598 ORTHO05D008132 8.6e-39 165.2 133 64.7
HPP92_018785 Vanilla planifolia HOM05D006598 ORTHO05D008132 1.9e-38 164.1 154 50.6
MD15G1027400 Malus domestica HOM05D006598 ORTHO05D008132 4.7e-37 159.5 88 79.5
Actinidia22543 Actinidia chinensis HOM05D006598 ORTHO05D008132 9.8e-35 151.8 131 59.5
Actinidia29824 Actinidia chinensis HOM05D006598 ORTHO05D008132 3.6e-21 106.7 134 43.3
CSS0032599 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 4.0e-20 103.2 125 44.0
MCO09G151 Micromonas commoda HOM05D006598 ORTHO05D008132 8.4e-18 95.5 160 39.4
Nitab4.5_0000457g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 4.3e-14 83.2 72 55.6
HanXRQChr09g0268921 Helianthus annuus HOM05D006598 ORTHO05D008132 8.1e-13 79.0 69 58.0
CBR_g22328 Chara braunii HOM05D006598 ORTHO05D008132 4.9e-10 69.7 117 35.0
Cre17.g737650 Chlamydomonas reinhardtii HOM05D038115 ORTHO05D008132 1.4e-09 68.2 192 28.6
Cre16.g677600 Chlamydomonas reinhardtii HOM05D006598 ORTHO05D008132 1.5e-06 58.2 169 29.0
Cre01.g055469 Chlamydomonas reinhardtii HOM05D006737 ORTHO05D008418 2.5e-06 57.4 140 27.9
Thecc.01G301300 Theobroma cacao HOM05D006737 ORTHO05D008418 9.6e-06 55.5 183 27.3


User provided reference genes

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