Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26480 Selenicereus undatus HOM05D002158 ORTHO05D002148 1.0e-33 146.4 83 100.0
Hund26479 Selenicereus undatus HOM05D002158 ORTHO05D002148 1.1e-27 126.3 107 68.2
Hund26482 Selenicereus undatus HOM05D002158 ORTHO05D002148 3.8e-25 117.9 107 64.5
AUR62011082 Chenopodium quinoa HOM05D002158 ORTHO05D002148 3.3e-21 104.8 106 55.7
Hund09147 Selenicereus undatus HOM05D002158 ORTHO05D002148 1.7e-20 102.4 106 57.5
AUR62033464 Chenopodium quinoa HOM05D002158 ORTHO05D002148 8.2e-20 100.1 106 53.8
EL10Ac8g18607 Beta vulgaris HOM05D002158 ORTHO05D002148 4.5e-18 94.4 106 51.9
Ah.09g225730 Amaranthus hybridus HOM05D002158 ORTHO05D002148 1.0e-17 93.2 102 53.9
CiPaw.04G170000 Carya illinoinensis HOM05D002158 ORTHO05D002148 2.2e-17 92.0 101 54.5
Dinv36554 Davidia involucrata HOM05D002158 ORTHO05D002148 2.9e-17 91.7 101 55.4
vmacro23136 Vaccinium macrocarpon HOM05D002158 ORTHO05D002148 2.9e-17 91.7 102 55.9
Dinv41534 Davidia involucrata HOM05D002158 ORTHO05D002148 6.5e-17 90.5 102 55.9
Atru.chr7.1189 Acer truncatum HOM05D002158 ORTHO05D002148 8.5e-17 90.1 102 53.9
MBI04_g38195_MAGBIO Magnolia biondii HOM05D002158 ORTHO05D002148 8.5e-17 90.1 106 53.8
Ciclev10009984m.g Citrus clementina HOM05D002158 ORTHO05D002148 1.1e-16 89.7 102 54.9
DCAR_014863 Daucus carota HOM05D002158 ORTHO05D002148 1.1e-16 89.7 102 52.9
TAR636G3336 Trochodendron aralioides HOM05D002158 ORTHO05D002148 1.1e-16 89.7 106 52.8
Aqoxy7G03734 Aquilegia oxysepala HOM05D002158 ORTHO05D002148 2.5e-16 88.6 104 52.9
Cfa003342 Carpinus fangiana HOM05D002158 ORTHO05D002148 3.2e-16 88.2 102 53.9
DCAR_017835 Daucus carota HOM05D002158 ORTHO05D002148 4.2e-16 87.8 102 52.0
PGR142G1930 Punica granatum HOM05D002158 ORTHO05D002148 4.2e-16 87.8 99 53.5
QL02p087709 Quercus lobata HOM05D002158 ORTHO05D002148 4.2e-16 87.8 101 54.5
TAR625G0044 Trochodendron aralioides HOM05D002158 ORTHO05D002148 4.2e-16 87.8 101 54.5
MSTRG.16575 Avicennia marina HOM05D002158 ORTHO05D002148 5.5e-16 87.4 104 51.0
Rhsim01G0077000 Rhododendron simsii HOM05D002158 ORTHO05D002148 7.2e-16 87.0 99 54.5
Manes.06G053700 Manihot esculenta HOM05D002158 ORTHO05D002148 9.4e-16 86.7 104 51.0
GSVIVG01015498001 Vitis vinifera HOM05D002158 ORTHO05D002148 1.2e-15 86.3 101 53.5
Haze_25618 Corylus avellana HOM05D002158 ORTHO05D002148 1.6e-15 85.9 102 52.9
Dinv11230 Davidia involucrata HOM05D002158 ORTHO05D002148 1.6e-15 85.9 96 56.2
CiPaw.03G241300 Carya illinoinensis HOM05D002158 ORTHO05D002148 2.1e-15 85.5 98 52.0
DCAR_017836 Daucus carota HOM05D002158 ORTHO05D002148 8.0e-15 83.6 106 48.1
Manes.14G129900 Manihot esculenta HOM05D002158 ORTHO05D002148 1.0e-14 83.2 105 51.4
arahy.Tifrunner.gnm1.ann1.ED9HPN Arachis hypogaea HOM05D002158 ORTHO05D002148 1.4e-14 82.8 105 50.5
Dinv11229 Davidia involucrata HOM05D002158 ORTHO05D002148 1.4e-14 82.8 96 54.2
TWI63G0453 Tripterygium wilfordii HOM05D002158 ORTHO05D002148 1.4e-14 82.8 103 47.6
Gohir.A05G018200 Gossypium hirsutum HOM05D002158 ORTHO05D002148 1.8e-14 82.4 102 53.9
Gohir.D05G019100 Gossypium hirsutum HOM05D002158 ORTHO05D002148 1.8e-14 82.4 102 53.9
Gorai.009G019500 Gossypium raimondii HOM05D002158 ORTHO05D002148 1.8e-14 82.4 102 53.9
PSO170G0969 Papaver somniferum HOM05D002158 ORTHO05D002148 2.3e-14 82.0 100 51.0
arahy.Tifrunner.gnm1.ann1.KZF81I Arachis hypogaea HOM05D002158 ORTHO05D002148 3.0e-14 81.6 103 51.5
Glyma.17G117100 Glycine max HOM05D002158 ORTHO05D002148 3.0e-14 81.6 95 54.7
arahy.Tifrunner.gnm1.ann1.WT3AEF Arachis hypogaea HOM05D002158 ORTHO05D002148 4.0e-14 81.3 96 53.1
COL.COLO4_05755 Corchorus olitorius HOM05D002158 ORTHO05D002148 5.2e-14 80.9 102 52.0
PSO455G0200 Papaver somniferum HOM05D002158 ORTHO05D002148 5.2e-14 80.9 100 50.0
Cc06_g08840 Coffea canephora HOM05D002158 ORTHO05D002148 6.8e-14 80.5 100 52.0
Eucgr.L00293 Eucalyptus grandis HOM05D002158 ORTHO05D002148 8.8e-14 80.1 98 51.0
Glyma.05G008900 Glycine max HOM05D002158 ORTHO05D002148 8.8e-14 80.1 90 55.6
ATR1156G016 Amborella trichopoda HOM05D002158 ORTHO05D002148 1.2e-13 79.7 98 53.1
Duzib168G1182 Durio zibethinus HOM05D002158 ORTHO05D002148 1.2e-13 79.7 106 50.0
Lalb_Chr13g0302011 Lupinus albus HOM05D002158 ORTHO05D002148 1.2e-13 79.7 96 50.0
Nn2g11956 Nelumbo nucifera HOM05D002158 ORTHO05D002148 1.5e-13 79.3 101 46.5
arahy.Tifrunner.gnm1.ann1.KXQV93 Arachis hypogaea HOM05D002158 ORTHO05D002148 2.0e-13 79.0 96 52.1
Gohir.A05G018100 Gossypium hirsutum HOM05D002158 ORTHO05D002148 2.0e-13 79.0 102 51.0
Gohir.D05G019000 Gossypium hirsutum HOM05D002158 ORTHO05D002148 2.0e-13 79.0 102 51.0
Gorai.009G019400 Gossypium raimondii HOM05D002158 ORTHO05D002148 2.0e-13 79.0 102 51.0
HanXRQChr05g0140651 Helianthus annuus HOM05D002158 ORTHO05D002148 2.0e-13 79.0 86 57.0
HanXRQChr05g0140661 Helianthus annuus HOM05D002158 ORTHO05D002148 2.0e-13 79.0 86 57.0
HanXRQChr05g0140671 Helianthus annuus HOM05D002158 ORTHO05D002148 2.0e-13 79.0 86 57.0
Potri.004G184000 Populus trichocarpa HOM05D002158 ORTHO05D002148 2.0e-13 79.0 97 50.5
VMungo1215G0677 Vigna mungo HOM05D002158 ORTHO05D002148 2.0e-13 79.0 100 50.0
Eucgr.L00290 Eucalyptus grandis HOM05D002158 ORTHO05D002148 2.6e-13 78.6 98 50.0
Potri.009G143800 Populus trichocarpa HOM05D002158 ORTHO05D002148 2.6e-13 78.6 100 51.0
THA.LOC104809003 Tarenaya hassleriana HOM05D002158 ORTHO05D002148 2.6e-13 78.6 102 50.0
Glyma.17G117200 Glycine max HOM05D002158 ORTHO05D002148 3.4e-13 78.2 96 51.0
Sabra04G0123700 Salix brachista HOM05D002158 ORTHO05D002148 3.4e-13 78.2 95 50.5
Sabra09G0111500 Salix brachista HOM05D002158 ORTHO05D002148 3.4e-13 78.2 100 51.0
Gohir.A06G057500 Gossypium hirsutum HOM05D002158 ORTHO05D002148 4.4e-13 77.8 106 49.1
Lalb_Chr12g0197801 Lupinus albus HOM05D002158 ORTHO05D002148 4.4e-13 77.8 98 50.0
CSS0029549 Camellia sinensis var. sinensis HOM05D002158 ORTHO05D002148 5.7e-13 77.4 95 51.6
Eucgr.C01130 Eucalyptus grandis HOM05D002158 ORTHO05D002148 5.7e-13 77.4 98 50.0
Glyma.05G009000 Glycine max HOM05D002158 ORTHO05D002148 5.7e-13 77.4 96 51.0
Phvul.003G162150 Phaseolus vulgaris HOM05D002158 ORTHO05D002148 5.7e-13 77.4 104 50.0
EL10Ac8g18605 Beta vulgaris HOM05D002158 ORTHO05D002148 7.5e-13 77.0 93 51.6
Ca_21700_v3 Cicer arietinum L. HOM05D002158 ORTHO05D002148 7.5e-13 77.0 96 50.0
ECA236G1143 Erigeron canadensis HOM05D002158 ORTHO05D002148 7.5e-13 77.0 91 51.6
HanXRQChr05g0140681 Helianthus annuus HOM05D002158 ORTHO05D002148 7.5e-13 77.0 86 54.7
Sabra09G0114200 Salix brachista HOM05D002158 ORTHO05D002148 7.5e-13 77.0 100 51.0
TPR.G10686 Trifolium pratense HOM05D002158 ORTHO05D002148 7.5e-13 77.0 97 49.5
AUR62011081 Chenopodium quinoa HOM05D002158 ORTHO05D002148 9.8e-13 76.6 100 50.0
AUR62033463 Chenopodium quinoa HOM05D002158 ORTHO05D002148 9.8e-13 76.6 100 50.0
Lalb_Chr07g0178771 Lupinus albus HOM05D002158 ORTHO05D002148 9.8e-13 76.6 95 49.5
TWI34G1568 Tripterygium wilfordii HOM05D002158 ORTHO05D002148 9.8e-13 76.6 91 51.6
Eucgr.L00292 Eucalyptus grandis HOM05D002158 ORTHO05D002148 1.3e-12 76.3 98 49.0
Prupe.7G239200 Prunus persica HOM05D002158 ORTHO05D002148 1.3e-12 76.3 103 51.5
Nn8g39383 Nelumbo nucifera HOM05D002158 ORTHO05D002148 1.7e-12 75.9 99 48.5
RcHm_v2.0_Chr2g0089171 Rosa chinensis HOM05D002158 ORTHO05D002148 1.7e-12 75.9 101 49.5
Gohir.D06G055800 Gossypium hirsutum HOM05D002158 ORTHO05D002148 2.2e-12 75.5 106 48.1
Phvul.003G162200 Phaseolus vulgaris HOM05D002158 ORTHO05D002148 2.2e-12 75.5 100 49.0
Sed0002388 Sechium edule HOM05D002158 ORTHO05D002148 2.2e-12 75.5 101 48.5
CAN.G594.21 Capsicum annuum HOM05D002158 ORTHO05D002148 3.7e-12 74.7 91 50.5
Glyma.06G216500 Glycine max HOM05D002158 ORTHO05D002148 3.7e-12 74.7 94 50.0
MD15G1176400 Malus domestica HOM05D002158 ORTHO05D002148 4.8e-12 74.3 101 51.5
Medtr4g113820 Medicago truncatula HOM05D002158 ORTHO05D002148 6.3e-12 73.9 96 47.9
Nitab4.5_0003558g0020 Nicotiana tabacum HOM05D002158 ORTHO05D002148 1.1e-11 73.2 95 53.7
Sc08g0006770 Simmondsia chinensis HOM05D002158 ORTHO05D002148 1.1e-11 73.2 103 46.6
CsaV3_2G002720 Cucumis sativus L. HOM05D002158 ORTHO05D002148 1.8e-11 72.4 101 46.5
Duzib150G1145 Durio zibethinus HOM05D002158 ORTHO05D002148 1.8e-11 72.4 102 48.0
Duzib150G1498 Durio zibethinus HOM05D002158 ORTHO05D002148 1.8e-11 72.4 102 48.0
FvH4_1g03760 Fragaria vesca HOM05D002158 ORTHO05D002148 1.8e-11 72.4 101 47.5
MD02G1036200 Malus domestica HOM05D002158 ORTHO05D002148 1.8e-11 72.4 101 47.5
Nn2g11955 Nelumbo nucifera HOM05D002158 ORTHO05D002148 1.8e-11 72.4 99 45.5
Solyc12g006560.3 Solanum lycopersicum HOM05D002158 ORTHO05D002148 1.8e-11 72.4 93 51.6
Actinidia22006 Actinidia chinensis HOM05D002158 ORTHO05D002148 2.4e-11 72.0 102 49.0
Gorai.010G065100 Gossypium raimondii HOM05D002158 ORTHO05D002148 2.4e-11 72.0 106 47.2
Nitab4.5_0005563g0010 Nicotiana tabacum HOM05D002158 ORTHO05D002148 2.4e-11 72.0 102 48.0
Oeu026162.1 Olea europaea HOM05D002158 ORTHO05D002148 2.4e-11 72.0 98 45.9
Peaxi162Scf00984g00248 Petunia axillaris HOM05D002158 ORTHO05D002148 2.4e-11 72.0 101 48.5
Psat4g045160 Pisum sativum HOM05D002158 ORTHO05D002148 2.4e-11 72.0 96 46.9
FAN19G0901 Fragaria x ananassa HOM05D002158 ORTHO05D002148 4.1e-11 71.2 102 47.1
Oeu007955.1 Olea europaea HOM05D002158 ORTHO05D002148 5.4e-11 70.9 102 47.1
Actinidia40451 Actinidia chinensis HOM05D002158 ORTHO05D002148 7.0e-11 70.5 99 49.5
CANSAT11G2328 Cannabis sativa HOM05D002158 ORTHO05D002148 7.0e-11 70.5 101 49.5
CDE02G2906 Ceratophyllum demersum HOM05D002158 ORTHO05D002148 7.0e-11 70.5 98 43.9
Psat2g066360 Pisum sativum HOM05D002158 ORTHO05D002148 7.0e-11 70.5 96 45.8
Psat4g044920 Pisum sativum HOM05D002158 ORTHO05D002148 7.0e-11 70.5 96 45.8
CDE01G0101 Ceratophyllum demersum HOM05D002158 ORTHO05D002148 9.1e-11 70.1 98 44.9
FAN23G2479 Fragaria x ananassa HOM05D002158 ORTHO05D002148 9.1e-11 70.1 101 46.5
Lj4g0013806 Lotus japonicus HOM05D002158 ORTHO05D002148 9.1e-11 70.1 94 46.8
MD02G1036100 Malus domestica HOM05D002158 ORTHO05D002148 1.2e-10 69.7 101 48.5
Sopen12g002510 Solanum pennellii HOM05D002158 ORTHO05D002148 1.2e-10 69.7 101 46.5
HPP92_005157 Vanilla planifolia HOM05D002158 ORTHO05D002148 2.7e-10 68.6 87 50.6
Migut.B00619 Erythranthe guttata HOM05D002158 ORTHO05D002148 4.5e-10 67.8 100 48.0
FAN26G3215 Fragaria x ananassa HOM05D002158 ORTHO05D002148 4.5e-10 67.8 101 45.5
Eucgr.C04179 Eucalyptus grandis HOM05D002158 ORTHO05D002148 7.7e-10 67.0 102 44.1
Solyc12g006680.2 Solanum lycopersicum HOM05D002158 ORTHO05D002148 1.7e-09 65.9 103 45.6
AUR62033462 Chenopodium quinoa HOM05D000146 ORTHO05D000178 2.2e-09 65.5 76 53.9
Phvul.009G198400 Phaseolus vulgaris HOM05D002158 ORTHO05D002148 2.2e-09 65.5 92 45.7
ClCG11G002880 Citrullus lanatus HOM05D002158 ORTHO05D002148 3.8e-09 64.7 87 48.3
Thecc.09G122600 Theobroma cacao HOM05D002158 ORTHO05D002148 8.5e-09 63.5 89 48.3
Sopen12g002630 Solanum pennellii HOM05D002158 ORTHO05D002148 1.9e-08 62.4 103 43.7
AUR62011080 Chenopodium quinoa HOM05D002158 ORTHO05D002148 2.5e-08 62.0 75 52.0
HanXRQChr10g0316821 Helianthus annuus HOM05D002158 ORTHO05D002148 2.5e-08 62.0 91 47.3
Sc18g0000740 Simmondsia chinensis HOM05D002158 ORTHO05D002148 2.5e-08 62.0 83 55.4
MELO3C004522.2 Cucumis melo HOM05D002158 ORTHO05D002148 5.5e-08 60.8 133 35.3
Psat4g045040 Pisum sativum HOM05D002158 ORTHO05D002148 9.4e-08 60.1 92 42.4
PGSC0003DMG400018965 Solanum tuberosum HOM05D002158 ORTHO05D002148 1.6e-07 59.3 135 37.8
Nn2g11954 Nelumbo nucifera HOM05D002158 ORTHO05D002148 2.7e-07 58.5 43 72.1
EL10Ac8g18606 Beta vulgaris HOM05D002158 ORTHO05D002148 3.6e-07 58.2 52 63.5
CANSAT35G1724 Cannabis sativa HOM05D002158 ORTHO05D002148 3.6e-07 58.2 79 50.6
Thecc.09G122400 Theobroma cacao HOM05D002158 ORTHO05D002148 6.1e-07 57.4 52 65.4
CDE02G1509 Ceratophyllum demersum HOM05D002158 ORTHO05D002148 3.0e-06 55.1 92 41.3
CDE04G0787 Ceratophyllum demersum HOM05D002158 ORTHO05D002148 4.0e-06 54.7 92 41.3
Zm00001eb377390 Zea mays HOM05D002158 ORTHO05D002148 4.0e-06 54.7 87 42.5
Zm00001eb377410 Zea mays HOM05D002158 ORTHO05D002148 4.0e-06 54.7 87 42.5
Duzib187G0842 Durio zibethinus HOM05D002158 ORTHO05D002148 6.8e-06 53.9 52 61.5
Zm00001eb377400 Zea mays HOM05D002158 ORTHO05D002148 8.8e-06 53.5 87 41.4


User provided reference genes

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