Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26395 Selenicereus undatus HOM05D007179 ORTHO05D009124 4.7e-70 267.7 132 100.0
Hund08993 Selenicereus undatus HOM05D007179 ORTHO05D009124 5.9e-36 154.5 130 58.5
AUR62039974 Chenopodium quinoa HOM05D007179 ORTHO05D009124 2.5e-34 149.1 131 59.5
AUR62040282 Chenopodium quinoa HOM05D007179 ORTHO05D009124 3.2e-34 148.7 131 59.5
Sc14g0001110 Simmondsia chinensis HOM05D007179 ORTHO05D009124 2.5e-31 139.0 115 60.0
Nn1g04316 Nelumbo nucifera HOM05D007179 ORTHO05D009124 2.8e-30 135.6 102 67.6
CiPaw.07G187200 Carya illinoinensis HOM05D007179 ORTHO05D009124 6.3e-30 134.4 110 61.8
GSVIVG01032307001 Vitis vinifera HOM05D007179 ORTHO05D009124 6.9e-29 131.0 109 61.5
SalBow1G0390 Salvia bowleyana HOM05D007179 ORTHO05D009124 1.5e-28 129.8 106 62.3
Gohir.D05G007500 Gossypium hirsutum HOM05D007179 ORTHO05D009124 4.5e-28 128.3 110 59.1
Thecc.09G162500 Theobroma cacao HOM05D007179 ORTHO05D009124 4.5e-28 128.3 112 60.7
Gorai.009G007600 Gossypium raimondii HOM05D007179 ORTHO05D009124 5.9e-28 127.9 110 59.1
Actinidia24032 Actinidia chinensis HOM05D007179 ORTHO05D009124 7.7e-28 127.5 131 54.2
Cpa.g.c29666.1 Carica papaya HOM05D007179 ORTHO05D009124 1.0e-27 127.1 128 51.6
CANSAT11G0330 Cannabis sativa HOM05D007179 ORTHO05D009124 1.3e-27 126.7 106 60.4
TWI63G0613 Tripterygium wilfordii HOM05D007179 ORTHO05D009124 1.3e-27 126.7 120 56.7
Gohir.A05G006600 Gossypium hirsutum HOM05D007179 ORTHO05D009124 2.9e-27 125.6 110 58.2
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 3.8e-27 125.2 112 56.2
Duzib150G1658 Durio zibethinus HOM05D007179 ORTHO05D009124 5.0e-27 124.8 96 62.5
Dinv41297 Davidia involucrata HOM05D007179 ORTHO05D009124 8.5e-27 124.0 112 57.1
Oeu058831.1 Olea europaea HOM05D007179 ORTHO05D009124 1.9e-26 122.9 121 54.5
Potri.006G175600 Populus trichocarpa HOM05D007179 ORTHO05D009124 1.9e-26 122.9 129 51.9
Rhsim01G0010000 Rhododendron simsii HOM05D007179 ORTHO05D009124 3.2e-26 122.1 112 55.4
CiPaw.08G039500 Carya illinoinensis HOM05D007179 ORTHO05D009124 5.5e-26 121.3 94 66.0
CSS0047035 Camellia sinensis var. sinensis HOM05D007179 ORTHO05D009124 7.2e-26 120.9 106 58.5
PGR102G1777 Punica granatum HOM05D007179 ORTHO05D009124 7.2e-26 120.9 91 70.3
Sabra06G0134300 Salix brachista HOM05D007179 ORTHO05D009124 1.6e-25 119.8 82 76.8
Atru.chr7.533 Acer truncatum HOM05D007179 ORTHO05D009124 2.7e-25 119.0 82 74.4
Prupe.1G095600 Prunus persica HOM05D007179 ORTHO05D009124 3.6e-25 118.6 106 56.6
Sed0008122 Sechium edule HOM05D007179 ORTHO05D009124 7.9e-25 117.5 87 67.8
MSTRG.26242 Avicennia marina HOM05D007179 ORTHO05D009124 1.0e-24 117.1 106 58.5
MD16G1263600 Malus domestica HOM05D007179 ORTHO05D009124 1.0e-24 117.1 108 56.5
Ciclev10009752m.g Citrus clementina HOM05D007179 ORTHO05D009124 1.4e-24 116.7 107 57.9
Migut.K00269 Erythranthe guttata HOM05D007179 ORTHO05D009124 1.4e-24 116.7 110 57.3
arahy.Tifrunner.gnm1.ann1.7FN6WP Arachis hypogaea HOM05D007179 ORTHO05D009124 2.3e-24 115.9 102 56.9
arahy.Tifrunner.gnm1.ann1.8TJD28 Arachis hypogaea HOM05D007179 ORTHO05D009124 2.3e-24 115.9 102 56.9
Nitab4.5_0011540g0010 Nicotiana tabacum HOM05D007179 ORTHO05D009124 3.0e-24 115.5 85 70.6
Medtr4g129320 Medicago truncatula HOM05D007179 ORTHO05D009124 3.9e-24 115.2 103 57.3
TAR626G0641 Trochodendron aralioides HOM05D007179 ORTHO05D009124 3.9e-24 115.2 115 53.9
CAN.G584.44 Capsicum annuum HOM05D007179 ORTHO05D009124 5.1e-24 114.8 84 70.2
RcHm_v2.0_Chr4g0404651 Rosa chinensis HOM05D007179 ORTHO05D009124 5.1e-24 114.8 102 57.8
PGSC0003DMG400027448 Solanum tuberosum HOM05D007179 ORTHO05D009124 5.1e-24 114.8 84 69.0
ClCG11G012230 Citrullus lanatus HOM05D007179 ORTHO05D009124 6.7e-24 114.4 130 51.5
DCAR_017946 Daucus carota HOM05D007179 ORTHO05D009124 6.7e-24 114.4 91 64.8
Lj9A729T43 Lonicera japonica HOM05D007179 ORTHO05D009124 6.7e-24 114.4 106 54.7
Solyc07g006490.3 Solanum lycopersicum HOM05D007179 ORTHO05D009124 6.7e-24 114.4 118 54.2
THA.LOC104817810 Tarenaya hassleriana HOM05D007179 ORTHO05D009124 6.7e-24 114.4 92 62.0
CsaV3_2G008330 Cucumis sativus L. HOM05D007179 ORTHO05D009124 3.3e-23 112.1 124 54.0
Eucgr.C02437 Eucalyptus grandis HOM05D007179 ORTHO05D009124 3.3e-23 112.1 84 67.9
Sopen07g002570 Solanum pennellii HOM05D007179 ORTHO05D009124 3.3e-23 112.1 118 53.4
Psat0s236g0160 Pisum sativum HOM05D007179 ORTHO05D009124 4.4e-23 111.7 84 65.5
Peaxi162Scf00457g00318 Petunia axillaris HOM05D007179 ORTHO05D009124 7.4e-23 110.9 84 67.9
Lalb_Chr13g0300481 Lupinus albus HOM05D007179 ORTHO05D009124 9.7e-23 110.5 97 57.7
MBI15_g26085_MAGBIO Magnolia biondii HOM05D007179 ORTHO05D009124 9.7e-23 110.5 82 67.1
Manes.06G029800 Manihot esculenta HOM05D007179 ORTHO05D009124 9.7e-23 110.5 106 56.6
THA.LOC104811817 Tarenaya hassleriana HOM05D007179 ORTHO05D009124 9.7e-23 110.5 111 52.3
FvH4_4g08570 Fragaria vesca HOM05D007179 ORTHO05D009124 1.7e-22 109.8 99 58.6
Glyma.17G067900 Glycine max HOM05D007179 ORTHO05D009124 1.7e-22 109.8 109 56.0
MELO3C004033.2 Cucumis melo HOM05D007179 ORTHO05D009124 2.2e-22 109.4 87 66.7
ECA236G0374 Erigeron canadensis HOM05D007179 ORTHO05D009124 4.8e-22 108.2 88 61.4
Actinidia24777 Actinidia chinensis HOM05D007179 ORTHO05D009124 6.3e-22 107.8 124 53.2
Lj4g0019685 Lotus japonicus HOM05D007179 ORTHO05D009124 8.2e-22 107.5 110 50.0
Cc06_g13840 Coffea canephora HOM05D007179 ORTHO05D009124 5.3e-21 104.8 107 51.4
vmacro13080 Vaccinium macrocarpon HOM05D007179 ORTHO05D009124 1.2e-20 103.6 71 73.2
VMungo1215G3157 Vigna mungo HOM05D007179 ORTHO05D009124 1.2e-20 103.6 108 51.9
Aa31LG3G160 Aethionema arabicum HOM05D007179 ORTHO05D009124 2.6e-20 102.4 99 56.6
HanXRQChr05g0136491 Helianthus annuus HOM05D007179 ORTHO05D009124 2.6e-20 102.4 76 68.4
BraA03t14832Z Brassica rapa HOM05D007179 ORTHO05D009124 3.4e-20 102.1 104 55.8
C07p55870 Brassica napus HOM05D007179 ORTHO05D009124 4.5e-20 101.7 86 64.0
PSO063G6628 Papaver somniferum HOM05D007179 ORTHO05D009124 4.5e-20 101.7 131 47.3
A03p57660 Brassica napus HOM05D007179 ORTHO05D009124 5.9e-20 101.3 104 55.8
BolC7t46066H Brassica oleracea HOM05D007179 ORTHO05D009124 5.9e-20 101.3 87 63.2
C01p24450 Brassica napus HOM05D007179 ORTHO05D009124 7.7e-20 100.9 97 57.7
BolC1t02394H Brassica oleracea HOM05D007179 ORTHO05D009124 7.7e-20 100.9 97 57.7
Ca_21187_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 7.7e-20 100.9 71 69.0
Lsat_1_v5_gn_8_65641 Lactuca sativa HOM05D007179 ORTHO05D009124 7.7e-20 100.9 115 49.6
Sp7g25970 Schrenkiella parvula HOM05D007179 ORTHO05D009124 1.0e-19 100.5 86 62.8
Aqoxy7G03201 Aquilegia oxysepala HOM05D007179 ORTHO05D009124 1.7e-19 99.8 93 57.0
FAN22G0121 Fragaria x ananassa HOM05D007179 ORTHO05D009124 1.7e-19 99.8 61 80.3
BcaNung01603 Brassica carinata HOM05D007179 ORTHO05D009124 2.2e-19 99.4 97 55.7
PSO782G3484 Papaver somniferum HOM05D007179 ORTHO05D009124 2.2e-19 99.4 125 48.8
BraA01t01881Z Brassica rapa HOM05D007179 ORTHO05D009124 5.0e-19 98.2 97 54.6
Thhalv10026434m.g Eutrema salsugineum HOM05D007179 ORTHO05D009124 5.0e-19 98.2 96 53.1
Phvul.003G150500 Phaseolus vulgaris HOM05D007179 ORTHO05D009124 5.0e-19 98.2 62 77.4
BcaC06g32651 Brassica carinata HOM05D007179 ORTHO05D009124 6.5e-19 97.8 86 61.6
A01p19410 Brassica napus HOM05D007179 ORTHO05D009124 6.5e-19 97.8 97 53.6
Carub.0007s1277 Capsella rubella HOM05D007179 ORTHO05D009124 8.5e-19 97.4 98 54.1
FAN17G2417 Fragaria x ananassa HOM05D007179 ORTHO05D009124 1.9e-18 96.3 56 85.7
Nitab4.5_0002004g0010 Nicotiana tabacum HOM05D007179 ORTHO05D009124 1.9e-18 96.3 59 83.1
HPP92_018535 Vanilla planifolia HOM05D007179 ORTHO05D009124 2.5e-18 95.9 78 65.4
EL10Ac8g18859 Beta vulgaris HOM05D007179 ORTHO05D009124 3.2e-18 95.5 71 66.2
CDE05G2983 Ceratophyllum demersum HOM05D007179 ORTHO05D009124 5.5e-18 94.7 95 54.7
AL7G24590 Arabidopsis lyrata HOM05D007179 ORTHO05D009124 7.2e-18 94.4 69 68.1
ATR0580G253 Amborella trichopoda HOM05D007179 ORTHO05D009124 1.6e-17 93.2 100 48.0
AT4G28025 Arabidopsis thaliana HOM05D007179 ORTHO05D009124 2.7e-17 92.4 69 66.7
CDE02G2992 Ceratophyllum demersum HOM05D007179 ORTHO05D009124 2.7e-17 92.4 93 53.8
unitig_37.g12688 Utricularia gibba HOM05D007179 ORTHO05D009124 6.1e-17 91.3 84 58.3
SGA_v2.0_scaffold325G48698 Striga asiatica HOM05D007179 ORTHO05D009124 8.0e-17 90.9 63 73.0
CARHR235720 Cardamine hirsuta HOM05D007179 ORTHO05D009124 1.0e-16 90.5 95 51.6
Zm00001eb246810 Zea mays HOM05D007179 ORTHO05D009124 1.4e-16 90.1 77 59.7
SMO358G0032 Selaginella moellendorffii HOM05D007179 ORTHO05D009124 6.7e-16 87.8 99 48.5
Medtr4g129300 Medicago truncatula HOM05D007179 ORTHO05D009124 5.7e-15 84.7 65 63.1
AagrBONN_evm.TU.Sc2ySwM_362.2423 Anthoceros agrestis HOM05D007179 ORTHO05D009124 9.7e-15 84.0 78 53.8
Mapoly0124s0027 Marchantia polymorpha HOM05D007179 ORTHO05D009124 2.2e-14 82.8 63 61.9
Pp3c12_25950 Physcomitrium patens HOM05D007179 ORTHO05D009124 1.2e-12 77.0 75 52.0
Haze_22156 Corylus avellana HOM05D007179 ORTHO05D009124 1.3e-11 73.6 70 52.9
BcaC09g50519 Brassica carinata HOM05D000147 ORTHO05D013131 3.0e-08 62.4 45 68.9
Haze_22155 Corylus avellana HOM05D007179 ORTHO05D009124 2.6e-07 59.3 34 79.4
Dinv42771 Davidia involucrata HOM05D007179 ORTHO05D009124 5.7e-07 58.2 81 42.0


User provided reference genes

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