Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 6.2e-210 733.8 349 100.0
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 8.0e-125 451.1 309 67.0
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 3.1e-121 439.1 315 65.4
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.2e-120 437.2 334 62.9
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 2.6e-115 419.5 319 62.1
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 4.9e-114 415.2 309 62.5
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 2.4e-113 412.9 313 61.7
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 5.0e-111 405.2 310 60.3
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 1.1e-110 404.1 313 59.7
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 1.1e-110 404.1 311 60.5
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.5e-110 403.7 313 60.1
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 1.9e-110 403.3 312 59.9
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 3.3e-110 402.5 310 60.0
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 5.6e-110 401.7 311 59.5
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 9.5e-110 401.0 315 60.0
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 8.0e-109 397.9 313 58.8
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 1.4e-108 397.1 311 59.2
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 1.4e-108 397.1 352 56.0
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 1.8e-108 396.7 311 59.8
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 1.8e-108 396.7 304 60.5
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 1.8e-108 396.7 311 60.8
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 3.1e-108 396.0 312 60.6
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.2e-108 395.2 312 59.0
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 6.8e-108 394.8 312 59.6
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 6.8e-108 394.8 311 58.5
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 6.8e-108 394.8 318 57.9
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 8.9e-108 394.4 315 58.1
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 1.2e-107 394.0 319 57.1
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.2e-107 394.0 311 58.2
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 1.2e-107 394.0 309 59.9
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 2.0e-107 393.3 315 56.8
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 2.6e-107 392.9 310 58.1
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 2.6e-107 392.9 304 60.5
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.4e-107 392.1 313 58.1
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 4.4e-107 392.1 312 58.7
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 4.4e-107 392.1 317 57.4
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 7.5e-107 391.3 313 57.5
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 9.8e-107 391.0 331 55.9
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 9.8e-107 391.0 310 58.4
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 1.3e-106 390.6 310 59.4
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.3e-106 390.6 313 59.7
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 1.7e-106 390.2 313 59.1
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.7e-106 390.2 319 56.4
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 1.7e-106 390.2 321 57.9
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 2.2e-106 389.8 313 57.8
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 2.9e-106 389.4 304 58.6
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 4.9e-106 388.7 314 58.0
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 4.9e-106 388.7 310 59.4
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 6.4e-106 388.3 313 57.2
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 8.3e-106 387.9 331 55.3
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 1.1e-105 387.5 313 59.4
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 1.4e-105 387.1 310 58.1
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 1.9e-105 386.7 311 57.2
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 1.9e-105 386.7 312 59.0
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 2.4e-105 386.3 313 57.8
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 3.2e-105 386.0 313 57.8
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 3.2e-105 386.0 313 56.2
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 4.1e-105 385.6 309 57.6
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 5.4e-105 385.2 312 58.7
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 5.4e-105 385.2 313 56.5
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 7.0e-105 384.8 315 56.8
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 7.0e-105 384.8 311 56.3
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 7.0e-105 384.8 304 58.6
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 7.0e-105 384.8 312 56.4
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 7.0e-105 384.8 304 59.5
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 7.0e-105 384.8 311 56.9
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 9.2e-105 384.4 311 57.6
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 1.2e-104 384.0 304 57.9
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 1.2e-104 384.0 337 54.3
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 1.2e-104 384.0 313 56.5
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 2.0e-104 383.3 311 57.2
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 3.5e-104 382.5 313 55.9
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 6.0e-104 381.7 311 57.2
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 7.8e-104 381.3 310 58.1
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 1.0e-103 380.9 307 59.6
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 1.0e-103 380.9 310 58.7
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 1.3e-103 380.6 310 57.7
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 1.7e-103 380.2 313 57.5
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 1.7e-103 380.2 310 58.1
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 1.7e-103 380.2 310 58.1
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 1.7e-103 380.2 323 57.9
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 2.3e-103 379.8 310 58.4
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 2.3e-103 379.8 313 57.8
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 6.6e-103 378.3 313 56.2
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 6.6e-103 378.3 311 57.2
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 8.6e-103 377.9 313 56.5
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 1.5e-102 377.1 313 56.9
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 1.5e-102 377.1 312 57.7
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.9e-102 376.7 313 56.2
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.9e-102 376.7 313 55.9
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 2.5e-102 376.3 339 54.6
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 3.3e-102 375.9 310 54.8
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 9.5e-102 374.4 309 57.9
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 9.5e-102 374.4 309 56.0
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 2.1e-101 373.2 306 57.2
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 2.1e-101 373.2 313 55.0
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 2.1e-101 373.2 315 57.8
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 2.1e-101 373.2 311 56.3
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 4.7e-101 372.1 313 55.6
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.7e-101 372.1 313 55.6
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 6.2e-101 371.7 311 58.2
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 6.2e-101 371.7 311 56.3
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 8.1e-101 371.3 310 57.4
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 2.7e-96 356.3 314 54.1
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 4.3e-94 349.0 306 53.3
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 1.6e-93 347.1 288 56.2
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 6.2e-93 345.1 314 51.9
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 5.2e-92 342.0 313 53.4
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 2.0e-91 340.1 304 54.6
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 3.8e-90 335.9 305 54.8
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 4.1e-89 332.4 279 55.6
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 1.6e-88 330.5 306 51.3
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 4.3e-86 322.4 310 53.2
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 8.1e-85 318.2 312 52.6
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 1.7e-82 310.5 306 52.3
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 5.6e-78 295.4 211 62.1
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 1.8e-76 290.4 306 50.0
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 3.4e-75 286.2 329 46.5
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 3.4e-75 286.2 329 46.5
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.1e-73 281.2 442 36.9
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 7.1e-73 278.5 226 56.2
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 1.2e-72 277.7 213 61.0
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 9.9e-67 258.1 246 50.0
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 2.2e-66 256.9 186 62.9
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 1.0e-63 248.1 200 55.5
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 8.2e-61 238.4 190 55.3
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 2.5e-54 216.9 173 57.2
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 1.0e-50 204.9 166 54.2
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 1.1e-44 184.9 204 47.1
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.0e-38 164.1 304 35.2
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 9.1e-28 128.6 99 60.6
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.0e-27 127.5 99 59.6
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 1.7e-26 124.4 85 58.8
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 9.4e-25 118.6 97 55.7
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 8.0e-24 115.5 84 63.1
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 1.7e-21 107.8 306 28.8
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 5.3e-20 102.8 325 26.5
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.3e-18 98.2 81 51.9
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 2.0e-14 84.3 110 46.4
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 5.7e-14 82.8 73 52.1
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 7.5e-14 82.4 92 47.8
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 1.2e-08 65.1 130 31.5
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 5.7e-06 56.2 84 32.1


User provided reference genes

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