Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 8.5e-134 480.3 242 100.0
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 2.3e-102 375.9 214 86.4
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 2.1e-100 369.4 212 84.9
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.3e-97 360.1 214 84.6
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 3.2e-96 355.5 212 80.2
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 4.1e-96 355.1 208 81.2
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 3.5e-95 352.1 208 81.2
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 4.6e-95 351.7 205 82.4
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 6.0e-95 351.3 210 80.0
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 1.7e-94 349.7 205 82.0
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 2.3e-94 349.4 205 82.0
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 3.0e-94 349.0 205 81.5
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 3.9e-94 348.6 205 81.0
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 8.6e-94 347.4 205 80.5
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 1.1e-93 347.1 205 82.0
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 1.1e-93 347.1 205 81.5
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 1.1e-93 347.1 207 80.2
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.9e-93 346.3 214 78.0
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 1.9e-93 346.3 205 81.0
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 7.3e-93 344.4 205 80.0
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 2.1e-92 342.8 214 77.1
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 2.8e-92 342.4 214 78.0
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 3.6e-92 342.0 207 78.3
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 3.6e-92 342.0 205 79.0
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 4.7e-92 341.7 207 77.8
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 4.7e-92 341.7 210 77.1
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 6.2e-92 341.3 205 80.5
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 8.1e-92 340.9 209 78.0
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 2.4e-91 339.3 208 77.4
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 3.1e-91 339.0 207 77.3
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 4.0e-91 338.6 207 76.8
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 5.2e-91 338.2 210 77.1
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 6.8e-91 337.8 205 78.5
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 8.9e-91 337.4 214 76.6
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 1.5e-90 336.7 217 76.0
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 2.0e-90 336.3 205 79.5
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 2.6e-90 335.9 205 79.0
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 3.4e-90 335.5 205 79.0
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 4.4e-90 335.1 208 75.5
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 4.4e-90 335.1 205 77.6
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 4.4e-90 335.1 205 78.5
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 5.8e-90 334.7 210 77.1
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 5.8e-90 334.7 214 74.8
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 9.9e-90 334.0 210 76.2
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 1.7e-89 333.2 205 78.0
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.2e-89 332.8 210 76.7
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 2.2e-89 332.8 215 75.3
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 2.9e-89 332.4 211 76.3
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 4.9e-89 331.6 205 76.1
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 4.9e-89 331.6 205 78.5
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 6.4e-89 331.3 210 75.2
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 1.1e-88 330.5 189 84.7
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.1e-88 330.5 210 76.2
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.4e-88 330.1 205 74.1
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 1.9e-88 329.7 213 76.1
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 2.4e-88 329.3 205 78.0
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 3.2e-88 328.9 205 77.1
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 3.2e-88 328.9 235 68.5
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 3.2e-88 328.9 205 78.0
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 4.2e-88 328.6 205 77.1
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 7.1e-88 327.8 207 74.9
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 9.3e-88 327.4 205 74.1
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 1.2e-87 327.0 205 74.1
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 1.2e-87 327.0 205 75.1
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 1.2e-87 327.0 207 74.9
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 1.6e-87 326.6 205 75.1
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 1.6e-87 326.6 205 75.1
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 2.7e-87 325.9 205 74.6
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 2.7e-87 325.9 205 74.6
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 2.7e-87 325.9 205 73.7
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 2.7e-87 325.9 212 74.1
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 3.5e-87 325.5 205 74.6
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 3.5e-87 325.5 205 74.1
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 4.6e-87 325.1 208 76.4
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 6.0e-87 324.7 205 74.6
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 6.0e-87 324.7 205 74.1
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 6.0e-87 324.7 203 75.9
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 7.8e-87 324.3 205 73.7
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 1.0e-86 323.9 205 74.6
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 1.3e-86 323.6 205 74.6
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 1.3e-86 323.6 205 74.1
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 1.7e-86 323.2 205 74.1
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 3.9e-86 322.0 205 72.7
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 1.3e-84 317.0 215 72.1
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 8.1e-84 314.3 210 71.0
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 1.1e-83 313.9 208 72.6
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 1.2e-82 310.5 205 72.7
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 2.2e-81 306.2 203 71.4
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 2.2e-81 306.2 205 69.3
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 8.4e-81 304.3 212 70.3
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 2.1e-79 299.7 218 67.9
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 1.0e-78 297.4 213 70.0
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 3.9e-78 295.4 203 67.0
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 3.6e-76 288.9 210 69.5
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 3.6e-76 288.9 207 66.2
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 2.4e-75 286.2 205 68.8
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 5.3e-75 285.0 207 64.7
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 5.8e-74 281.6 178 75.8
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.3e-73 280.4 166 79.5
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.7e-73 280.0 178 74.2
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 6.4e-73 278.1 203 67.0
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 4.2e-72 275.4 203 66.5
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 3.5e-71 272.3 166 78.3
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 8.7e-70 267.7 191 69.6
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 1.0e-65 254.2 282 51.4
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 1.6e-63 246.9 157 77.1
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 4.6e-63 245.4 157 74.5
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 8.2e-60 234.6 157 71.3
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 2.0e-58 229.9 189 61.9
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 3.5e-55 219.2 133 75.2
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 6.7e-54 214.9 216 49.5
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 4.5e-50 202.2 208 49.5
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 1.1e-48 197.6 182 54.9
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 1.1e-45 187.6 141 68.1
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 1.8e-43 180.3 123 69.1
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 1.8e-43 180.3 123 69.1
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 4.1e-43 179.1 153 58.8
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 2.2e-41 173.3 211 48.3
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 1.8e-38 163.7 95 83.2
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 5.1e-38 162.2 223 41.7
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 5.1e-38 162.2 223 41.7
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 4.5e-26 122.5 204 37.3
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 1.7e-20 104.0 100 57.0
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 2.8e-20 103.2 86 60.5
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.4e-19 100.9 60 80.0
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.4e-19 100.9 59 81.4
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 5.0e-17 92.4 72 59.7
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 5.0e-17 92.4 53 84.9
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 1.6e-15 87.4 57 73.7
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 8.8e-14 81.6 72 56.9
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 2.4e-11 73.6 80 50.0
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 3.5e-10 69.7 55 67.3
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 2.3e-09 67.0 135 39.3
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.5e-08 64.3 40 75.0
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 7.3e-08 62.0 50 58.0
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 1.2e-07 61.2 33 87.9
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 1.4e-06 57.8 36 66.7


User provided reference genes

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