Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 2016.5 1086 100.0
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1641.7 1090 79.6
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1613.6 1086 79.7
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1607.0 1205 73.1
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1511.9 923 84.6
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1502.3 1085 75.7
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1492.2 1087 71.8
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1466.1 1098 71.7
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1448.3 1093 73.3
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1445.3 1079 72.1
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1444.5 1095 71.8
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1429.8 1030 73.3
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1427.5 1088 68.8
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1414.8 1108 67.4
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1409.4 1027 72.8
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1407.9 1087 70.2
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1404.8 1026 72.3
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1401.7 1091 69.7
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1401.0 1099 68.1
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1400.2 1027 72.0
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1398.6 1027 72.4
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1396.7 1089 70.1
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1395.6 1094 68.6
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1395.2 1088 70.0
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1393.6 1104 69.3
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1392.5 1086 69.6
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1390.9 1024 72.8
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1387.9 1050 70.7
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1386.3 1070 69.7
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1385.2 1076 69.7
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1384.0 1084 69.3
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1381.7 1089 69.6
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1380.5 1074 69.8
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1379.4 1087 68.9
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1379.0 1055 70.5
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1378.2 1026 72.0
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1376.3 1098 69.4
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1374.0 1094 68.2
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1374.0 1094 68.2
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1369.4 979 71.8
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1367.8 1094 67.6
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1365.5 1080 68.1
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1364.4 1086 68.0
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1363.6 1035 70.5
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1363.6 1089 68.7
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1363.2 870 77.5
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1362.8 870 77.4
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1361.7 870 77.4
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1360.9 1087 68.3
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1360.9 868 78.0
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1359.4 1028 70.7
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1359.0 990 71.7
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1358.6 1078 67.1
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1358.2 1127 66.4
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1357.8 1063 69.4
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1349.7 990 72.3
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1348.2 1094 66.5
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1348.2 1088 66.3
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1347.4 1028 69.6
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1342.4 1093 67.9
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1340.9 1092 68.2
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1340.1 976 70.5
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1335.9 956 71.1
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1334.7 1031 69.9
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1334.7 1032 70.2
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1332.0 892 75.1
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1331.6 1030 69.9
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1330.1 1093 67.0
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1327.8 957 70.3
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1324.7 1040 67.9
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1323.9 1056 67.5
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1317.8 956 69.9
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1314.3 1032 67.2
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1312.7 990 69.0
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1312.4 988 70.4
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1310.8 952 71.6
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1310.4 1085 65.4
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1306.2 870 75.5
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1304.3 956 69.5
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1304.3 956 69.5
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1303.1 956 69.4
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1303.1 956 69.4
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1286.6 1011 67.1
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1281.5 1131 62.8
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1280.0 1056 66.0
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1277.7 928 69.5
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1275.4 1049 66.1
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1268.4 1024 65.7
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1267.3 1070 66.1
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1247.3 1039 65.4
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1234.2 1095 62.9
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1224.2 1006 67.3
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1219.1 870 71.1
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1213.4 900 68.9
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1205.3 1039 61.6
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1189.9 1256 55.7
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1185.2 1089 60.8
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1161.0 1040 60.4
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1132.5 881 64.2
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1087.4 923 60.1
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 4.0e-300 1035.0 946 56.9
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 4.5e-299 1031.6 693 74.7
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 5.8e-299 1031.2 690 74.9
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 4.9e-290 1001.5 1028 56.8
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 6.1e-264 914.8 635 73.2
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 3.9e-263 912.1 541 82.6
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 1.3e-261 907.1 759 59.4
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 9.1e-252 874.4 690 66.2
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.1e-225 787.7 636 64.2
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 8.7e-178 628.6 572 57.5
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 1.7e-165 587.8 445 67.4
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 4.1e-151 540.0 318 83.0
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 3.8e-141 506.9 476 64.3
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.8e-125 453.8 450 56.4
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 2.3e-122 444.5 368 59.5
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 7.0e-103 379.8 360 64.7
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 5.1e-101 373.6 284 69.0
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 2.4e-90 338.2 324 56.8
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 2.4e-87 328.2 1095 27.9
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 1.1e-84 319.3 233 68.2
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.3e-83 315.8 276 60.1
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 3.1e-82 311.2 233 66.5
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 5.8e-81 307.0 1073 26.1
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 8.1e-67 260.0 249 56.6
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 1.5e-65 255.8 190 66.3
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 8.2e-59 233.4 134 83.6
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.3e-51 207.2 144 68.1
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.3e-44 184.9 107 85.0
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.4e-42 179.5 389 33.2
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 7.7e-41 173.7 217 46.1
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 5.0e-40 171.0 99 80.8
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.6e-38 166.0 108 75.9
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 2.7e-38 165.2 103 75.7
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 6.1e-38 164.1 225 40.9
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 8.2e-35 153.7 121 63.6
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.0e-34 150.6 165 49.1
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.7e-33 147.1 119 58.8
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.2e-31 141.7 93 77.4
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.2e-31 141.7 149 52.3
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 6.1e-30 137.5 244 38.5
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 8.0e-30 137.1 237 39.7
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 8.2e-27 127.1 108 62.0
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 8.2e-27 127.1 108 62.0
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 8.2e-27 127.1 108 62.0
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.7e-24 119.4 86 70.9
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 1.7e-24 119.4 84 67.9
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 9.4e-23 113.6 79 67.1
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.0e-21 108.2 61 82.0
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.2e-20 106.7 89 64.0
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.5e-20 104.0 61 75.4
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 1.3e-19 103.2 97 63.9
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.3e-19 103.2 59 83.1
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 2.8e-19 102.1 151 43.0
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 1.1e-18 100.1 151 43.0
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.0e-18 97.4 67 70.1
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.3e-16 93.2 79 58.2
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.2e-16 92.4 80 60.0
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 5.5e-15 87.8 51 78.4
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 5.5e-15 87.8 47 93.6
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 3.6e-14 85.1 251 35.5
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.3e-13 82.4 122 45.9
AUR62025190 Chenopodium quinoa HOM05D003881 ORTHO05D004343 1.3e-11 76.6 111 45.9
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.1e-10 72.0 57 63.2
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.0e-10 70.9 135 37.0
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 2.7e-09 68.9 76 46.1
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 4.5e-09 68.2 63 50.8
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 5.0e-08 64.7 76 44.7
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 9.5e-07 60.5 181 38.7
MCO11G359 Micromonas commoda HOM05D026299 ORTHO05D028720 2.1e-06 59.3 230 23.9
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 2.8e-06 58.9 66 45.5
SEGI_25641 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.0e-06 57.4 38 68.4


User provided reference genes

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