Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 1.7e-135 486.1 265 100.0
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 5.3e-52 208.8 270 50.0
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 2.4e-49 199.9 282 45.7
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 4.2e-49 199.1 282 46.1
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 4.5e-43 179.1 281 43.1
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 3.0e-23 113.2 275 34.9
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 3.7e-21 106.3 273 33.3
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 5.3e-20 102.4 288 32.6
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 2.9e-18 96.7 283 31.8
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 5.0e-18 95.9 285 30.5
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 1.4e-17 94.4 124 41.1
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.4e-17 94.4 280 32.1
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 2.5e-17 93.6 280 27.1
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 3.2e-17 93.2 265 29.4
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 7.2e-17 92.0 289 31.5
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.2e-16 91.3 187 34.2
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 1.6e-16 90.9 269 31.6
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.6e-16 90.9 281 30.6
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 2.7e-16 90.1 292 31.8
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 3.6e-16 89.7 282 30.5
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 6.1e-16 89.0 184 33.7
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 7.9e-16 88.6 276 31.9
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 1.8e-15 87.4 280 31.8
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 3.0e-15 86.7 281 30.2
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 3.9e-15 86.3 279 27.6
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 3.9e-15 86.3 286 28.7
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 8.8e-15 85.1 284 27.1
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 1.5e-14 84.3 132 34.8
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 2.0e-14 84.0 266 26.3
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 5.7e-14 82.4 258 31.4
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 2.2e-13 80.5 275 29.8
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 2.8e-13 80.1 291 26.8
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.1e-12 78.2 283 28.6
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.1e-12 78.2 278 27.7
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.4e-12 77.8 262 27.5
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.4e-12 77.8 262 28.6
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 2.4e-12 77.0 298 27.2
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 4.1e-12 76.3 286 25.9
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 4.1e-12 76.3 284 26.4
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 5.3e-12 75.9 303 27.7
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 6.9e-12 75.5 262 28.6
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 9.1e-12 75.1 121 39.7
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 9.1e-12 75.1 265 26.4
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 9.1e-12 75.1 280 24.6
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 9.1e-12 75.1 266 29.3
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 9.1e-12 75.1 123 31.7
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.2e-11 74.7 125 29.6
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 2.0e-11 73.9 188 33.0
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 2.0e-11 73.9 264 27.7
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 5.9e-11 72.4 292 26.0
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 7.7e-11 72.0 288 24.7
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.0e-10 71.6 181 30.9
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.3e-10 71.2 266 30.1
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.7e-10 70.9 271 25.8
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 1.7e-10 70.9 262 30.9
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 1.7e-10 70.9 262 30.2
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 1.7e-10 70.9 265 28.3
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 2.2e-10 70.5 313 27.5
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 2.9e-10 70.1 262 30.9
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 2.9e-10 70.1 262 30.2
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 5.0e-10 69.3 260 28.5
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 5.0e-10 69.3 258 29.8
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 8.5e-10 68.6 284 27.8
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 1.1e-09 68.2 281 27.0
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.1e-09 68.2 274 25.2
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 1.1e-09 68.2 260 28.1
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 1.1e-09 68.2 268 26.5
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.4e-09 67.8 129 27.1
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 1.4e-09 67.8 271 27.3
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 1.4e-09 67.8 274 27.7
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 1.9e-09 67.4 257 25.7
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 3.2e-09 66.6 260 27.7
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 3.2e-09 66.6 263 26.6
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 4.2e-09 66.2 260 26.5
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 4.2e-09 66.2 271 25.1
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 4.2e-09 66.2 256 24.6
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 4.2e-09 66.2 283 24.7
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 5.5e-09 65.9 293 25.6
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 5.5e-09 65.9 139 29.5
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 7.2e-09 65.5 128 32.8
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 9.4e-09 65.1 290 24.8
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 9.4e-09 65.1 128 33.6
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 9.4e-09 65.1 156 31.4
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 9.4e-09 65.1 271 25.5
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 1.2e-08 64.7 282 25.5
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 1.2e-08 64.7 262 27.1
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 1.2e-08 64.7 262 27.1
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.2e-08 64.7 128 32.8
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 1.2e-08 64.7 141 30.5
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.6e-08 64.3 292 24.7
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.6e-08 64.3 262 25.2
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 2.1e-08 63.9 280 27.1
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 2.1e-08 63.9 273 30.0
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 3.6e-08 63.2 123 30.1
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 3.6e-08 63.2 123 31.7
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 4.7e-08 62.8 126 30.2
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 4.7e-08 62.8 274 23.7
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 6.1e-08 62.4 285 24.6
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 6.1e-08 62.4 276 25.4
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 7.9e-08 62.0 268 28.0
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 7.9e-08 62.0 268 28.0
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.0e-07 61.6 261 28.4
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 1.4e-07 61.2 135 29.6
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.8e-07 60.8 256 24.2
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 1.8e-07 60.8 262 25.6
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 2.3e-07 60.5 285 24.2
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 2.3e-07 60.5 257 27.6
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 2.3e-07 60.5 264 25.4
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 3.0e-07 60.1 253 29.2
Lsat_1_v5_gn_6_63900 Lactuca sativa HOM05D003500 ORTHO05D003919 3.0e-07 60.1 238 26.1
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 3.0e-07 60.1 184 27.2
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 3.9e-07 59.7 152 28.9
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 3.9e-07 59.7 261 26.8
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 3.9e-07 59.7 259 25.9
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 5.1e-07 59.3 265 26.0
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 6.7e-07 58.9 263 25.1
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 6.7e-07 58.9 129 31.8
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 8.8e-07 58.5 129 31.8
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 8.8e-07 58.5 261 27.2
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 8.8e-07 58.5 280 28.9
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 8.8e-07 58.5 257 26.5
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 1.1e-06 58.2 276 25.7
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.5e-06 57.8 262 23.7
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 1.5e-06 57.8 124 29.0
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.6e-06 57.0 129 30.2
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 3.3e-06 56.6 306 24.8
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 3.3e-06 56.6 299 24.4
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 4.4e-06 56.2 269 26.8
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 4.4e-06 56.2 262 24.8
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 4.4e-06 56.2 276 25.7
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 5.7e-06 55.8 286 25.2
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 5.7e-06 55.8 260 23.5
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 7.4e-06 55.5 277 26.0
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 7.4e-06 55.5 155 29.7
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 9.7e-06 55.1 278 25.5
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 9.7e-06 55.1 279 26.5
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 9.7e-06 55.1 129 27.9
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 9.7e-06 55.1 272 23.5
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 9.7e-06 55.1 127 26.0
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 9.7e-06 55.1 166 27.7


User provided reference genes

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