Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 0.0e+00 1114.4 575 100.0
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 2.0e-104 384.0 469 48.2
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 4.9e-103 379.4 458 48.7
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 7.3e-99 365.5 461 46.9
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 9.5e-91 338.6 495 43.0
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.2e-80 305.1 545 37.6
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 2.6e-80 303.9 531 37.9
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.7e-79 301.2 401 44.9
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 1.2e-77 295.0 431 39.2
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 3.5e-77 293.5 430 43.3
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 4.6e-77 293.1 425 41.2
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 4.6e-77 293.1 420 41.4
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 7.8e-77 292.4 425 42.4
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 6.9e-73 279.3 421 39.7
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 6.9e-73 279.3 427 40.5
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 1.5e-72 278.1 435 37.7
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 2.0e-72 277.7 441 39.0
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 4.5e-72 276.6 542 35.8
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 3.8e-71 273.5 429 39.4
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 6.4e-71 272.7 424 39.2
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 5.4e-70 269.6 432 41.2
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 5.4e-70 269.6 437 38.4
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 1.6e-69 268.1 432 39.8
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 2.1e-69 267.7 427 40.0
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 3.5e-69 266.9 431 40.1
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 7.9e-69 265.8 422 41.0
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 1.8e-68 264.6 424 40.8
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 2.3e-68 264.2 427 38.6
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 2.3e-68 264.2 426 39.0
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 3.0e-68 263.8 467 38.3
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 3.0e-68 263.8 450 38.9
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 5.1e-68 263.1 425 38.6
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 2.5e-67 260.8 421 39.7
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 3.3e-67 260.4 445 38.7
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 2.1e-66 257.7 430 38.4
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 2.1e-66 257.7 430 38.4
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 2.8e-66 257.3 362 43.9
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 8.1e-66 255.8 425 41.4
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 8.1e-66 255.8 424 38.2
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 2.4e-65 254.2 405 39.3
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 3.1e-65 253.8 433 39.0
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 4.0e-65 253.4 425 39.3
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 9.0e-65 252.3 499 34.9
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 1.5e-64 251.5 427 35.8
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 2.0e-64 251.1 403 38.5
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 2.0e-64 251.1 320 45.0
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 3.4e-64 250.4 377 40.3
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 7.6e-64 249.2 384 39.1
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 3.8e-63 246.9 428 36.7
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 4.9e-63 246.5 433 38.8
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 6.4e-63 246.1 529 34.4
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 1.4e-62 245.0 433 38.8
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 1.4e-62 245.0 422 35.8
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 3.5e-61 240.4 434 36.4
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 3.5e-61 240.4 425 35.8
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 4.6e-61 240.0 434 36.4
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 4.6e-61 240.0 413 37.8
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 4.6e-61 240.0 374 40.9
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 1.8e-60 238.0 435 36.8
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 1.8e-60 238.0 454 37.0
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 2.3e-60 237.7 542 32.5
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 2.3e-60 237.7 444 37.8
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 3.0e-60 237.3 431 36.2
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 6.7e-60 236.1 406 37.2
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 6.7e-60 236.1 430 34.9
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 1.9e-59 234.6 500 33.6
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 2.5e-59 234.2 435 34.0
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 3.3e-59 233.8 522 34.1
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 7.4e-59 232.6 420 36.2
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 9.6e-59 232.3 411 36.3
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 6.2e-58 229.6 439 36.2
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 8.1e-58 229.2 377 36.1
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 2.4e-57 227.6 432 33.3
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 3.1e-57 227.3 378 40.2
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 6.9e-57 226.1 420 35.5
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 9.0e-57 225.7 424 35.1
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 1.5e-56 224.9 429 34.3
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 2.0e-56 224.6 406 37.9
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 5.8e-56 223.0 539 32.1
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 2.2e-55 221.1 429 33.8
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 1.4e-54 218.4 377 35.5
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 9.3e-54 215.7 383 37.3
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.2e-53 215.3 285 44.2
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 6.0e-53 213.0 410 35.1
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 6.0e-53 213.0 410 35.1
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.5e-51 207.6 324 38.0
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 3.3e-51 207.2 433 32.6
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 5.7e-51 206.5 427 32.3
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 2.1e-50 204.5 332 39.2
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 2.8e-50 204.1 332 39.2
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 1.1e-49 202.2 386 36.0
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 1.1e-49 202.2 374 36.4
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 1.7e-47 194.9 409 35.0
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 3.2e-46 190.7 430 33.0
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 1.2e-45 188.7 430 33.0
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 1.3e-44 185.3 332 36.1
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 2.3e-44 184.5 327 37.3
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 9.7e-43 179.1 438 32.0
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 8.2e-42 176.0 368 33.7
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 3.1e-41 174.1 290 38.3
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 7.7e-32 142.9 194 44.3
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 2.1e-29 134.8 469 27.9
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.4e-28 132.1 338 30.8
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 9.7e-27 125.9 409 27.9
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 6.1e-21 106.7 421 24.9
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 3.0e-20 104.4 411 27.5
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 2.4e-17 94.7 242 31.8
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 3.5e-16 90.9 187 35.3
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.0e-15 89.4 194 34.5
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 2.7e-13 81.3 333 24.3
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 4.1e-09 67.4 91 41.8
SMO367G0476 Selaginella moellendorffii HOM05D026854 ORTHO05D008189 4.1e-09 67.4 427 22.7
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 3.5e-08 64.3 86 40.7


User provided reference genes

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