Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.3e-85 319.7 159 100.0
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 8.0e-64 247.3 159 70.4
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.3e-63 245.7 159 69.8
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 1.2e-62 243.4 159 70.4
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 5.7e-62 241.1 159 69.2
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 1.7e-61 239.6 159 67.9
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 2.2e-61 239.2 160 74.4
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 6.3e-61 237.7 156 69.9
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 8.3e-61 237.3 159 68.6
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.1e-60 236.9 158 67.7
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 2.4e-60 235.7 159 66.7
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 3.1e-60 235.3 159 66.0
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 3.1e-60 235.3 159 67.9
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 4.1e-60 235.0 159 65.4
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 5.4e-60 234.6 159 66.0
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 5.4e-60 234.6 159 66.7
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 5.4e-60 234.6 159 67.3
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.0e-60 234.2 159 67.3
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 9.1e-60 233.8 159 67.9
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 1.2e-59 233.4 158 64.6
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 1.6e-59 233.0 159 66.7
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 2.0e-59 232.6 159 67.3
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 2.0e-59 232.6 159 66.7
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 2.7e-59 232.3 159 67.3
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 3.5e-59 231.9 159 66.0
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 3.5e-59 231.9 159 66.0
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 4.5e-59 231.5 159 63.5
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 5.9e-59 231.1 159 67.9
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 5.9e-59 231.1 116 85.3
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 7.7e-59 230.7 159 65.4
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 1.7e-58 229.6 159 64.8
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 8.6e-58 227.3 119 82.4
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 8.6e-58 227.3 119 80.7
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 1.1e-57 226.9 158 65.8
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 1.1e-57 226.9 158 65.8
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.9e-57 226.1 154 64.3
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 1.9e-57 226.1 158 63.9
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.9e-57 226.1 159 65.4
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 2.5e-57 225.7 163 62.6
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 3.3e-57 225.3 165 61.2
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 4.2e-57 224.9 159 64.2
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 4.2e-57 224.9 154 64.3
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 4.2e-57 224.9 156 66.0
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 4.2e-57 224.9 157 65.0
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 4.2e-57 224.9 119 80.7
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 7.2e-57 224.2 158 68.4
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 9.5e-57 223.8 156 66.0
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 9.5e-57 223.8 159 64.8
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 9.5e-57 223.8 159 64.2
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 9.5e-57 223.8 153 66.7
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 1.2e-56 223.4 118 79.7
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.2e-56 223.4 159 64.2
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 1.6e-56 223.0 153 68.0
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 2.1e-56 222.6 159 64.2
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 3.6e-56 221.9 159 65.4
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 3.6e-56 221.9 159 64.8
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.6e-56 221.9 159 64.8
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.6e-56 221.9 159 64.8
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 3.6e-56 221.9 159 64.8
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 4.7e-56 221.5 159 62.3
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 6.1e-56 221.1 159 62.9
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 6.1e-56 221.1 116 81.9
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 8.0e-56 220.7 116 80.2
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 1.0e-55 220.3 159 62.9
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 1.4e-55 219.9 159 64.2
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 1.4e-55 219.9 159 62.9
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 2.3e-55 219.2 159 61.6
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 2.3e-55 219.2 159 61.6
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 2.3e-55 219.2 159 62.9
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 3.0e-55 218.8 159 62.3
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 6.8e-55 217.6 159 61.6
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 6.8e-55 217.6 159 61.6
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 1.5e-54 216.5 118 77.1
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 1.5e-54 216.5 160 62.5
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 2.0e-54 216.1 119 77.3
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 2.0e-54 216.1 151 64.9
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 3.4e-54 215.3 119 75.6
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 4.4e-54 214.9 158 63.3
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 4.4e-54 214.9 160 62.5
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 4.4e-54 214.9 160 62.5
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 4.4e-54 214.9 119 76.5
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 5.7e-54 214.5 119 75.6
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 5.7e-54 214.5 159 61.0
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 7.5e-54 214.2 119 76.5
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 1.3e-53 213.4 116 78.4
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 1.7e-53 213.0 119 76.5
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 2.9e-53 212.2 159 61.0
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 3.7e-53 211.8 157 59.9
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 3.7e-53 211.8 159 61.6
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 6.3e-53 211.1 159 61.6
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 6.3e-53 211.1 112 79.5
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 1.4e-52 209.9 159 62.3
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 5.4e-52 208.0 171 61.4
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.4e-52 208.0 157 63.1
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 9.2e-52 207.2 157 63.1
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 1.2e-51 206.8 109 80.7
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.6e-51 206.5 159 61.6
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 2.0e-51 206.1 159 62.9
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 4.6e-51 204.9 167 64.7
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 5.9e-51 204.5 115 76.5
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 5.9e-51 204.5 109 79.8
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 3.9e-50 201.8 147 63.3
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 3.9e-50 201.8 147 63.3
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 5.0e-50 201.4 156 59.6
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.2e-48 196.8 119 71.4
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 3.6e-48 195.3 119 69.7
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 4.7e-48 194.9 118 71.2
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.4e-47 193.4 119 70.6
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 1.2e-46 190.3 133 66.2
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 6.6e-42 174.5 185 47.6
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 3.6e-40 168.7 183 46.4
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.5e-38 163.3 116 58.6
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 2.0e-38 162.9 119 58.8
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 3.5e-35 152.1 161 49.1
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 2.3e-34 149.4 118 54.2
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 3.9e-34 148.7 94 68.1
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 9.5e-33 144.1 143 47.6
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 5.2e-31 138.3 87 67.8
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 2.2e-29 132.9 70 78.6
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 5.6e-25 118.2 59 83.1
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 1.6e-24 116.7 58 82.8
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.0e-18 97.4 132 43.9
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.1e-17 94.0 87 51.7
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.0e-15 85.5 90 47.8
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 1.5e-14 83.6 102 42.2
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 2.0e-14 83.2 89 47.2
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.6e-14 82.8 50 66.0
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 2.9e-13 79.3 113 38.1
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.9e-13 78.6 89 44.9
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 6.4e-13 78.2 80 52.5
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 1.6e-11 73.6 40 75.0
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 2.7e-11 72.8 111 36.0
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.0e-10 70.9 113 35.4
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 3.3e-09 65.9 49 55.1
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 9.6e-09 64.3 102 33.3
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 9.6e-09 64.3 47 55.3
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 1.6e-08 63.5 67 47.8
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 8.1e-08 61.2 46 54.3
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 8.1e-08 61.2 46 54.3
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.1e-07 60.8 47 53.2
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 1.8e-07 60.1 61 50.8
SEGI_11753 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 4.5e-06 55.5 46 52.2


User provided reference genes

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