Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 3.4e-261 904.4 452 100.0
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 1.7e-231 805.8 450 87.8
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 4.4e-224 781.2 449 84.6
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 8.2e-223 776.9 448 83.9
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 1.3e-220 769.6 451 84.5
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 2.5e-219 765.4 448 82.1
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 5.7e-216 754.2 449 81.5
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 7.5e-216 753.8 447 83.2
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 9.8e-216 753.4 448 81.5
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 1.3e-215 753.1 448 81.0
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 2.2e-215 752.3 448 83.3
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 4.8e-215 751.1 448 80.4
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 3.1e-214 748.4 448 80.4
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 3.1e-214 748.4 451 81.2
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 4.1e-214 748.0 448 80.4
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 1.2e-213 746.5 473 77.4
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 2.7e-213 745.3 452 79.9
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.3e-212 743.0 453 80.4
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 1.7e-212 742.7 450 79.1
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 5.0e-212 741.1 449 79.1
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 6.5e-212 740.7 454 78.9
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 4.2e-211 738.0 446 81.2
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 7.2e-211 737.3 448 80.4
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 1.2e-210 736.5 450 79.1
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 3.6e-210 734.9 448 78.3
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 4.7e-210 734.6 479 75.4
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.8e-209 732.6 448 80.1
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 2.3e-209 732.3 447 79.6
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 2.3e-209 732.3 453 79.2
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 3.0e-209 731.9 448 79.5
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 3.0e-209 731.9 448 79.0
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 6.8e-209 730.7 448 79.2
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 2.0e-208 729.2 447 79.6
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 3.4e-208 728.4 452 77.0
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 4.4e-208 728.0 451 78.5
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 5.7e-208 727.6 448 79.5
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 5.7e-208 727.6 475 77.3
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 1.7e-207 726.1 450 76.9
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 3.7e-207 724.9 449 77.5
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 1.1e-206 723.4 449 77.7
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 1.1e-206 723.4 448 77.9
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 3.1e-206 721.8 452 76.3
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 4.1e-206 721.5 449 79.7
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 4.1e-206 721.5 452 79.6
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 5.4e-206 721.1 461 76.4
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 1.6e-205 719.5 451 77.4
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 2.0e-205 719.2 451 77.4
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 3.5e-205 718.4 438 78.5
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 4.5e-205 718.0 451 77.4
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 5.9e-205 717.6 451 75.6
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.0e-204 716.8 450 78.0
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 2.3e-204 715.7 448 76.8
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 6.6e-204 714.1 448 78.3
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 8.6e-204 713.8 448 78.3
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 1.1e-203 713.4 449 78.2
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 1.1e-203 713.4 452 74.6
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 1.1e-203 713.4 448 78.1
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 7.3e-203 710.7 431 79.4
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 1.2e-202 709.9 449 77.5
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 1.8e-201 706.1 448 74.1
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 8.9e-201 703.7 447 74.5
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 8.9e-201 703.7 453 75.1
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 1.2e-200 703.4 466 72.5
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 1.2e-200 703.4 448 73.9
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 2.2e-199 699.1 455 74.1
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 2.9e-199 698.7 455 73.8
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 2.9e-199 698.7 454 72.9
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 5.4e-198 694.5 467 71.3
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 1.6e-197 693.0 448 73.9
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 2.0e-197 692.6 459 72.3
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 4.6e-197 691.4 448 73.4
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 6.0e-197 691.0 448 73.0
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 6.0e-197 691.0 448 74.1
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 6.0e-197 691.0 449 72.6
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 1.7e-196 689.5 448 72.5
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 3.9e-196 688.3 448 73.4
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 1.5e-195 686.4 500 71.2
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 1.9e-195 686.0 450 74.0
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 5.6e-195 684.5 448 73.7
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 8.0e-194 680.6 448 72.3
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 1.4e-193 679.9 468 69.4
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 1.8e-193 679.5 439 74.0
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 1.8e-193 679.5 450 73.6
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 3.1e-193 678.7 477 68.6
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 6.8e-193 677.6 450 73.1
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 5.8e-192 674.5 460 70.4
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 1.7e-191 672.9 448 75.2
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 6.0e-189 664.5 461 74.4
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 6.0e-189 664.5 483 70.6
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 3.0e-188 662.1 452 72.3
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 3.0e-188 662.1 464 71.3
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 5.0e-188 661.4 484 67.8
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.5e-187 659.8 450 74.4
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 1.5e-187 659.8 448 73.2
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 2.8e-186 655.6 459 67.8
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 6.2e-186 654.4 413 77.0
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 8.6e-180 634.0 407 77.4
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 2.0e-176 622.9 412 71.6
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 2.0e-176 622.9 409 73.8
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 6.4e-175 617.8 449 69.3
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 6.4e-175 617.8 385 74.3
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 2.5e-171 605.9 457 65.2
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 1.1e-169 600.5 380 78.4
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 6.2e-162 574.7 430 64.2
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 1.2e-157 560.5 322 83.5
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 2.7e-157 559.3 446 61.0
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 7.4e-155 551.2 430 60.2
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 4.0e-153 545.4 426 61.7
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 3.4e-152 542.3 430 59.1
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 7.2e-134 481.5 454 57.9
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 9.4e-134 481.1 273 82.4
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.5e-126 456.4 449 57.5
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 5.2e-116 422.2 434 46.5
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 1.5e-107 394.0 424 48.3
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 1.1e-97 361.3 367 55.0
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 3.5e-96 356.3 316 60.1
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 2.0e-88 330.5 182 85.2
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 4.3e-86 322.8 484 38.2
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 3.3e-62 243.4 188 66.5
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 7.1e-57 225.7 337 41.2
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 1.7e-55 221.1 376 39.9
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 6.9e-52 209.1 108 85.2
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 4.8e-45 186.4 124 76.6
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 5.8e-43 179.5 390 34.6
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 2.9e-42 177.2 125 73.6
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 3.3e-38 163.7 137 63.5
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 4.2e-33 146.7 102 69.6
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 5.1e-31 139.8 84 71.4
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 1.7e-26 124.8 131 48.9
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 1.8e-23 114.8 67 73.1
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 1.6e-21 108.2 192 33.3
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 2.2e-21 107.8 53 83.0
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 1.8e-20 104.8 71 70.4
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 4.1e-20 103.6 70 71.4
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 5.3e-20 103.2 69 69.6
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 1.5e-19 101.7 102 55.9
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 4.5e-19 100.1 104 55.8
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 4.6e-16 90.1 56 80.4


User provided reference genes

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