Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 2.7e-98 362.1 196 100.0
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 1.1e-25 120.9 194 44.8
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 4.2e-22 109.0 191 39.3
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 4.2e-22 109.0 146 45.9
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 3.5e-21 105.9 144 44.4
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 4.6e-21 105.5 188 39.4
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 4.6e-21 105.5 174 38.5
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 1.0e-20 104.4 176 38.1
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 2.3e-20 103.2 199 37.2
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 3.9e-20 102.4 193 37.3
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 5.1e-20 102.1 193 36.3
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 8.7e-20 101.3 172 39.0
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 1.1e-19 100.9 183 33.9
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 1.5e-19 100.5 172 38.4
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 1.5e-19 100.5 171 39.2
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 2.5e-19 99.8 168 36.3
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 3.3e-19 99.4 187 36.4
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 4.3e-19 99.0 183 38.8
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 1.3e-18 97.4 183 36.1
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 1.3e-18 97.4 193 37.3
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 1.3e-18 97.4 201 36.3
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 1.3e-18 97.4 166 36.7
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.3e-18 97.4 184 37.0
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 2.2e-18 96.7 185 33.5
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 3.7e-18 95.9 175 35.4
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 6.3e-18 95.1 192 33.3
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 6.3e-18 95.1 174 39.7
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.4e-17 94.0 170 36.5
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 2.4e-17 93.2 186 33.9
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 3.1e-17 92.8 165 35.2
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 3.1e-17 92.8 182 37.9
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 3.1e-17 92.8 178 33.7
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 4.1e-17 92.4 182 35.7
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 5.3e-17 92.0 204 35.3
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 6.9e-17 91.7 192 32.8
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 9.0e-17 91.3 182 35.2
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 9.0e-17 91.3 187 34.2
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 9.0e-17 91.3 189 33.9
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 1.2e-16 90.9 177 35.6
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 1.2e-16 90.9 176 35.8
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 1.2e-16 90.9 185 34.6
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 3.4e-16 89.4 165 34.5
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 4.5e-16 89.0 198 30.8
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 5.9e-16 88.6 191 34.0
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 7.7e-16 88.2 192 31.8
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 7.7e-16 88.2 192 31.8
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.0e-15 87.8 199 33.7
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 2.2e-15 86.7 195 32.3
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 2.2e-15 86.7 195 32.3
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 2.2e-15 86.7 165 35.2
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 2.9e-15 86.3 167 34.7
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 3.8e-15 85.9 195 32.3
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 3.8e-15 85.9 151 37.1
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 5.0e-15 85.5 193 31.6
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 5.0e-15 85.5 182 32.4
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 5.0e-15 85.5 79 50.6
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 6.5e-15 85.1 194 34.0
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 6.5e-15 85.1 191 31.4
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 1.9e-14 83.6 91 46.2
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 2.5e-14 83.2 186 32.3
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 3.2e-14 82.8 78 47.4
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 3.2e-14 82.8 185 35.1
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 4.2e-14 82.4 203 30.5
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 4.2e-14 82.4 171 35.7
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 4.2e-14 82.4 175 31.4
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 7.2e-14 81.6 167 30.5
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 7.2e-14 81.6 75 53.3
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 9.4e-14 81.3 167 30.5
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 1.2e-13 80.9 176 30.7
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 1.2e-13 80.9 181 31.5
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 1.6e-13 80.5 170 32.9
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 2.1e-13 80.1 167 35.3
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 2.7e-13 79.7 172 33.1
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 3.6e-13 79.3 153 32.0
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 4.6e-13 79.0 176 34.1
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 6.1e-13 78.6 167 29.3
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 6.1e-13 78.6 170 29.4
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 6.1e-13 78.6 182 31.3
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 6.1e-13 78.6 193 32.6
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 7.9e-13 78.2 167 31.7
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 1.8e-12 77.0 175 30.9
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 1.8e-12 77.0 82 46.3
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 3.9e-12 75.9 68 48.5
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 3.9e-12 75.9 68 48.5
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 5.1e-12 75.5 167 33.5
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 1.1e-11 74.3 64 46.9
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 1.1e-11 74.3 79 41.8
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 2.0e-11 73.6 58 51.7
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 2.0e-11 73.6 60 50.0
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 2.0e-11 73.6 121 37.2
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 3.3e-11 72.8 167 28.7
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 3.3e-11 72.8 57 52.6
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 7.4e-11 71.6 65 44.6
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 7.4e-11 71.6 193 26.9
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 9.7e-11 71.2 88 46.6
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 9.7e-11 71.2 167 29.9
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 1.3e-10 70.9 96 37.5
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 2.8e-10 69.7 136 29.4
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 4.8e-10 68.9 72 41.7
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 6.3e-10 68.6 167 28.1
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 6.3e-10 68.6 79 45.6
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.1e-09 67.8 88 46.6
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 1.8e-09 67.0 162 34.0
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 1.2e-08 64.3 53 50.9
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 1.2e-08 64.3 97 36.1
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 1.5e-08 63.9 162 28.4
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 3.4e-08 62.8 161 27.3
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 7.7e-08 61.6 104 35.6
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 2.2e-07 60.1 172 27.3
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 2.9e-07 59.7 64 42.2
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 5.0e-07 58.9 146 28.8


User provided reference genes

Program Settings