Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 3.7e-236 821.2 438 100.0
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.2e-111 406.8 316 75.3
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.8e-111 406.4 351 70.4
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 7.0e-110 401.7 313 75.1
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.6e-106 390.6 334 71.6
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.6e-106 389.4 262 75.6
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 3.0e-105 386.3 317 74.1
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 3.7e-103 379.4 262 74.0
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.8e-103 379.0 316 73.7
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.2e-101 374.4 260 74.6
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 3.5e-101 372.9 313 72.5
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 3.5e-101 372.9 262 73.3
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 1.0e-100 371.3 260 73.8
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 6.6e-100 368.6 314 72.3
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 8.6e-100 368.2 314 72.6
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 1.1e-99 367.9 262 72.5
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 5.5e-99 365.5 260 71.9
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.6e-98 364.0 260 71.2
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.8e-98 363.2 313 72.2
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 3.6e-98 362.8 335 69.0
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 4.7e-98 362.5 316 71.8
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.4e-97 360.9 260 72.7
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.8e-97 360.5 257 72.0
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 5.2e-97 359.0 261 71.3
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 5.2e-97 359.0 353 65.2
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 6.8e-97 358.6 314 72.3
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.5e-96 357.5 262 69.5
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 2.0e-96 357.1 319 69.6
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.6e-96 356.7 315 71.4
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 4.4e-96 355.9 312 70.5
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 5.7e-96 355.5 262 69.8
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.3e-95 354.4 359 63.8
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 2.8e-95 353.2 312 70.2
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 3.7e-95 352.8 262 68.7
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.7e-95 352.8 262 68.7
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.7e-95 352.8 262 68.7
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 4.9e-95 352.4 260 70.8
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 8.3e-95 351.7 262 69.1
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 8.3e-95 351.7 260 68.5
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 8.3e-95 351.7 312 68.9
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.4e-94 350.9 262 68.3
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.4e-94 350.1 262 67.9
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 5.4e-94 349.0 262 69.1
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 7.0e-94 348.6 262 70.6
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 1.6e-93 347.4 262 69.1
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 7.8e-93 345.1 260 68.8
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 7.8e-93 345.1 253 69.6
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 1.0e-92 344.7 261 67.8
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 1.3e-92 344.4 260 68.1
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 1.3e-92 344.4 260 68.8
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 1.3e-92 344.4 260 68.8
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 2.3e-92 343.6 261 66.7
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 8.6e-92 341.7 263 68.1
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 1.1e-91 341.3 244 72.1
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 2.5e-91 340.1 260 67.7
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 3.3e-91 339.7 260 66.9
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 4.3e-91 339.3 260 67.7
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 7.3e-91 338.6 261 67.8
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.1e-90 337.0 252 69.0
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 2.1e-90 337.0 262 66.4
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.6e-90 336.3 262 66.8
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 4.7e-90 335.9 260 67.3
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.7e-90 335.9 262 67.9
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 8.0e-90 335.1 260 66.9
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 1.0e-89 334.7 251 70.5
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 2.3e-89 333.6 261 66.7
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 2.3e-89 333.6 260 64.6
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.0e-89 332.8 295 61.0
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 4.0e-89 332.8 256 67.2
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 4.0e-89 332.8 256 66.8
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 4.0e-89 332.8 256 66.8
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 2.6e-88 330.1 259 65.3
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 3.4e-88 329.7 260 65.8
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 1.7e-87 327.4 256 66.8
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 1.7e-87 327.4 254 66.1
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.7e-87 327.4 261 67.0
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 3.7e-87 326.2 261 65.5
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 3.7e-87 326.2 261 63.6
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 7.0e-86 322.0 253 66.4
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 2.0e-85 320.5 317 56.8
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.7e-85 320.1 260 65.0
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 3.5e-85 319.7 251 64.5
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 3.5e-85 319.7 262 63.7
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 4.6e-85 319.3 262 64.5
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 7.8e-85 318.5 264 64.4
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 1.0e-84 318.2 262 65.3
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.7e-84 317.4 312 67.6
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 3.9e-84 316.2 263 64.3
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 1.5e-83 314.3 256 64.1
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 2.1e-82 310.5 233 70.8
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 3.6e-82 309.7 267 63.7
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 3.6e-82 309.7 267 63.7
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.1e-81 308.1 255 61.2
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 1.1e-81 308.1 262 64.9
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.8e-81 307.4 260 63.1
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 3.1e-81 306.6 231 68.4
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 5.8e-80 302.4 264 62.5
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.3e-79 301.2 264 62.5
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 1.9e-78 297.4 260 61.2
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 4.1e-78 296.2 258 61.6
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 2.1e-77 293.9 261 61.3
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 6.0e-77 292.4 264 62.1
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 6.0e-77 292.4 315 62.9
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 1.7e-76 290.8 267 61.0
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 2.3e-76 290.4 266 61.7
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 2.3e-76 290.4 244 63.9
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 3.0e-76 290.0 244 62.3
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 5.1e-76 289.3 258 60.1
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 6.6e-76 288.9 263 60.8
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 1.5e-75 287.7 265 60.8
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 3.3e-75 286.6 258 60.5
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 9.5e-75 285.0 263 58.6
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 2.8e-74 283.5 263 61.2
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 1.4e-73 281.2 263 60.8
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 1.7e-71 274.2 262 58.4
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 4.1e-70 269.6 260 56.9
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 7.1e-70 268.9 255 59.2
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 6.0e-69 265.8 217 65.0
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 6.0e-69 265.8 260 70.0
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 9.6e-67 258.5 216 64.8
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.8e-65 254.2 267 66.3
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 4.9e-63 246.1 313 58.5
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 3.2e-62 243.4 266 53.0
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.9e-59 234.2 259 53.7
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 2.5e-59 233.8 255 55.3
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 3.3e-59 233.4 239 56.9
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 1.3e-58 231.5 219 59.8
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 1.8e-57 227.6 266 49.6
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.6e-56 223.8 199 59.8
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 6.9e-49 199.1 220 54.5
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 9.0e-49 198.7 268 47.8
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 2.1e-37 161.0 131 64.1
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 3.0e-36 157.1 264 42.0
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 1.5e-35 154.8 169 50.9
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 5.8e-32 142.9 262 41.6
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.1e-30 138.7 250 39.2
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 1.4e-30 138.3 220 44.5
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 8.7e-28 129.0 246 39.4
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 4.3e-27 126.7 245 37.1
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 4.8e-26 123.2 242 39.7
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 3.1e-25 120.6 252 37.7
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 2.0e-24 117.9 246 37.4
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 2.9e-23 114.0 188 44.7
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 5.0e-23 113.2 253 37.5
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 8.5e-23 112.5 254 37.4
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 1.4e-22 111.7 53 94.3
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.2e-21 108.6 251 37.1
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 4.6e-21 106.7 246 36.2
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 1.8e-20 104.8 269 36.1
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.8e-20 104.8 248 35.5
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 2.3e-20 104.4 258 33.7
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.1e-19 102.1 275 33.1
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 4.3e-19 100.1 242 35.5
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.3e-18 98.6 255 36.1
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 6.3e-18 96.3 257 35.4
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.2e-16 92.0 269 31.2
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 2.6e-16 90.9 56 71.4
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.8e-15 87.0 45 84.4
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 6.5e-15 86.3 223 35.0
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.1e-14 85.5 104 51.9
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 1.1e-14 85.5 50 76.0
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 1.9e-14 84.7 172 39.0
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 4.7e-13 80.1 224 33.0
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 6.1e-13 79.7 256 33.2
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 1.8e-12 78.2 259 30.5
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 9.7e-11 72.4 197 34.5
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 6.3e-10 69.7 51 56.9
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 6.3e-10 69.7 228 30.7
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 4.1e-09 67.0 165 36.4
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 5.9e-08 63.2 51 52.9
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 7.7e-08 62.8 30 80.0
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 1.7e-07 61.6 177 34.5
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 2.9e-07 60.8 56 50.0
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 1.9e-06 58.2 260 26.9
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 4.2e-06 57.0 54 46.3


User provided reference genes

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