Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1696.4 838 100.0
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1441.8 841 84.7
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1437.6 841 83.9
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1411.4 873 80.8
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1368.2 841 79.7
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1365.5 841 81.2
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1358.6 841 79.1
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1353.6 841 78.5
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1352.4 841 78.8
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1352.0 841 79.4
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1349.7 840 78.3
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1347.4 841 77.8
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1343.2 841 77.6
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1339.7 841 78.0
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1338.9 841 77.6
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1337.0 841 77.6
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1336.6 868 76.3
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1334.7 841 78.1
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1332.4 915 73.3
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1331.2 833 78.5
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1328.9 858 76.7
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1328.2 829 78.6
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1327.0 841 77.2
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1325.1 841 76.3
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1324.7 841 77.2
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1323.5 841 77.5
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1321.6 841 78.1
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1321.6 841 76.3
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1320.4 841 76.8
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1317.0 848 76.9
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1315.4 841 76.5
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1315.1 766 83.3
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1314.7 843 76.7
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1313.9 843 76.4
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1313.5 841 76.1
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1313.5 841 76.3
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1313.1 841 76.9
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1312.7 841 76.9
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1312.7 841 75.3
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1310.4 841 76.0
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1310.0 842 76.2
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1308.9 858 75.9
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1307.7 841 75.9
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1302.7 841 75.9
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1302.0 841 76.1
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1302.0 841 75.9
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1301.6 841 75.9
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1301.2 847 76.0
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1301.2 841 76.0
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1300.4 842 75.5
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1297.7 841 75.6
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1296.2 841 75.4
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1293.1 841 75.3
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1290.4 841 75.0
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1289.2 841 75.0
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1289.2 970 68.0
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1287.3 841 75.0
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1286.2 844 74.9
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1285.8 841 75.0
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1285.4 841 75.0
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1284.6 850 74.6
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1283.1 841 75.1
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1283.1 841 75.1
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1281.9 850 74.4
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1281.9 846 75.1
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1281.5 842 74.8
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1280.8 850 74.4
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1278.5 841 74.4
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1278.1 904 70.5
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1277.7 914 70.4
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1277.3 841 74.3
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1276.5 841 74.9
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1275.8 841 74.6
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1270.8 841 74.1
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1268.4 841 74.2
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1268.1 911 69.7
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1266.1 841 73.8
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1262.3 851 73.4
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1255.4 841 73.4
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1252.7 784 76.8
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1248.4 826 74.2
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1243.4 870 71.4
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1235.7 766 77.7
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1225.7 823 73.8
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1215.3 844 72.2
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1212.6 817 74.1
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1203.7 754 78.6
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1199.1 780 75.1
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1193.3 777 75.3
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1185.2 844 71.1
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1182.2 791 74.5
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1181.0 838 69.8
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1161.7 861 66.3
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1161.4 843 68.1
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1157.1 841 69.8
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1153.7 827 68.9
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1136.7 848 67.2
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1120.1 838 68.1
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1103.6 689 78.8
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1102.0 699 76.4
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1090.5 854 64.1
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1088.9 751 70.7
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1086.2 842 65.8
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 4.4e-310 1067.8 842 63.5
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 2.8e-309 1065.1 849 63.0
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 6.1e-296 1020.8 654 76.3
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 3.4e-278 961.8 845 61.7
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 7.5e-246 854.4 644 67.7
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 7.3e-233 811.2 546 73.1
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 9.3e-220 767.7 516 73.4
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 2.3e-202 709.9 415 80.5
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 4.0e-154 549.7 329 80.5
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 4.3e-116 423.3 297 71.0
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 4.2e-111 406.8 310 65.2
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 4.6e-110 403.3 254 78.7
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 6.6e-109 399.4 288 68.4
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 7.6e-89 332.8 194 80.9
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 2.7e-86 324.3 385 47.5
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 7.9e-86 322.8 266 62.4
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 2.0e-65 255.0 182 68.7
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 2.9e-64 251.1 275 50.9
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 8.8e-53 213.0 139 77.0
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.3e-45 188.3 140 66.4
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 1.2e-41 176.0 117 75.2
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 2.8e-35 154.8 94 80.9
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 1.6e-33 149.1 83 83.1
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 6.6e-32 143.7 169 50.9
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 6.4e-27 127.1 88 71.6
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 4.1e-26 124.4 82 75.6
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 5.9e-25 120.6 76 76.3
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 4.0e-21 107.8 75 69.3
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 1.2e-20 106.3 68 75.0
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 5.4e-18 97.4 74 63.5
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 5.0e-16 90.9 67 67.2
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 6.8e-13 80.5 105 48.6
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 8.3e-11 73.6 51 64.7
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 3.5e-09 68.2 85 40.0
Lsat_1_v5_gn_5_73601 Lactuca sativa HOM05D000051 ORTHO05D000015 6.6e-08 63.9 51 54.9
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 5.6e-07 60.8 60 58.3


User provided reference genes

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