Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.8e-258 894.8 461 100.0
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 4.3e-219 764.6 466 83.9
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 9.6e-219 763.5 464 85.3
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.1e-218 762.3 465 83.2
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 4.0e-217 758.1 462 82.9
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.3e-199 699.9 460 77.8
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 2.2e-199 699.1 461 77.9
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 8.5e-199 697.2 459 76.3
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 1.4e-198 696.4 472 76.7
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 1.4e-198 696.4 459 76.0
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 5.5e-198 694.5 448 80.1
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 7.2e-198 694.1 459 76.0
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 3.6e-197 691.8 462 77.7
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 7.9e-197 690.6 462 78.8
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 2.5e-195 685.6 472 76.1
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 3.7e-194 681.8 460 77.6
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 3.7e-194 681.8 453 77.5
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.8e-193 679.5 465 77.4
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 2.4e-193 679.1 457 76.4
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 5.3e-193 677.9 457 76.6
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 2.6e-192 675.6 464 75.2
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 3.4e-192 675.2 453 76.4
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 3.4e-192 675.2 446 78.0
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 4.5e-192 674.9 456 77.0
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 7.7e-192 674.1 383 85.9
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 7.7e-192 674.1 454 77.3
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 1.0e-191 673.7 456 75.0
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.3e-191 673.3 460 74.8
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 1.3e-191 673.3 464 75.2
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 6.5e-191 671.0 462 74.5
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 6.5e-191 671.0 460 73.7
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 8.5e-191 670.6 460 74.3
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 1.4e-190 669.8 460 74.3
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 1.9e-190 669.5 460 74.3
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 2.5e-190 669.1 462 74.2
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 3.2e-190 668.7 458 74.7
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 3.2e-190 668.7 460 75.2
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 4.2e-190 668.3 448 75.9
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 5.5e-190 667.9 460 74.6
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 7.2e-190 667.5 448 75.4
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 9.4e-190 667.2 461 74.8
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 9.4e-190 667.2 462 73.2
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 9.4e-190 667.2 437 79.2
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.2e-189 666.8 456 75.4
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.1e-189 666.0 464 74.1
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 2.1e-189 666.0 457 76.8
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.7e-189 665.6 465 74.8
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.6e-189 665.2 457 74.4
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 3.6e-189 665.2 460 73.9
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 3.6e-189 665.2 454 76.4
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 4.7e-189 664.8 457 75.5
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 6.1e-189 664.5 459 73.6
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 6.1e-189 664.5 459 73.4
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 1.0e-188 663.7 464 74.1
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 1.8e-188 662.9 532 66.9
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.3e-188 662.5 462 73.6
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.0e-188 662.1 455 74.9
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 6.7e-188 661.0 451 75.2
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 8.8e-188 660.6 397 82.9
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 1.1e-187 660.2 454 76.4
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 2.0e-187 659.4 458 72.3
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.4e-187 658.3 462 73.2
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 1.3e-186 656.8 469 74.4
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 1.3e-186 656.8 460 73.9
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.7e-186 656.4 452 73.9
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.7e-186 656.4 395 82.3
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 2.2e-186 656.0 463 74.9
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 2.8e-186 655.6 395 82.3
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 2.8e-186 655.6 468 73.7
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 3.7e-186 655.2 392 82.7
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 4.8e-186 654.8 375 84.8
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 4.8e-186 654.8 456 75.9
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 6.3e-186 654.4 468 74.6
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.8e-185 652.9 457 72.9
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 9.1e-185 650.6 391 83.1
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 1.2e-184 650.2 476 72.5
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 3.5e-184 648.7 386 81.3
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 7.7e-184 647.5 466 73.0
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 7.7e-184 647.5 461 71.8
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.0e-183 647.1 456 72.6
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 1.3e-183 646.7 468 73.7
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 2.2e-183 646.0 385 81.8
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 5.0e-183 644.8 452 73.0
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 5.0e-183 644.8 465 73.5
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 6.5e-183 644.4 453 72.6
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 1.5e-182 643.3 429 75.5
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.9e-182 642.9 386 81.3
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 1.6e-181 639.8 389 80.7
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 2.7e-181 639.0 457 71.3
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 6.1e-181 637.9 385 80.5
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 8.0e-181 637.5 426 75.4
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 1.0e-180 637.1 393 80.7
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 1.8e-180 636.3 372 83.1
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 6.7e-180 634.4 409 77.0
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 1.1e-179 633.6 464 71.6
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 3.3e-179 632.1 398 78.6
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 3.3e-179 632.1 464 71.3
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 7.5e-179 630.9 452 71.7
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.7e-178 629.8 466 72.3
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 2.2e-178 629.4 461 70.3
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 3.7e-178 628.6 456 72.8
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 3.7e-178 628.6 454 71.6
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 1.6e-176 623.2 431 73.3
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 4.5e-176 621.7 397 76.6
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 1.3e-175 620.2 412 78.4
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 1.2e-173 613.6 427 72.6
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 2.2e-170 602.8 465 66.0
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.8e-162 575.9 357 75.9
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 2.9e-154 549.3 421 66.7
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 9.2e-153 544.3 460 64.1
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 2.3e-148 529.6 362 71.5
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 1.0e-143 514.2 380 67.4
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 4.3e-142 508.8 367 73.0
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.8e-141 506.1 373 64.9
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 9.8e-139 497.7 462 60.6
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 2.9e-138 496.1 346 74.0
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 1.1e-134 484.2 360 65.6
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 5.6e-134 481.9 362 65.2
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 1.8e-132 476.9 366 65.3
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.0e-131 473.4 320 74.7
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.2e-128 464.2 289 76.1
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 5.6e-126 455.3 276 79.7
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 1.3e-119 434.1 317 71.6
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.4e-113 414.1 312 68.6
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 3.2e-113 412.9 461 52.3
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 3.5e-112 409.5 252 79.0
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 3.1e-108 396.4 289 69.6
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 6.9e-108 395.2 322 68.3
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 1.5e-102 377.5 323 65.6
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 7.1e-97 358.6 329 54.7
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 2.1e-96 357.1 360 52.2
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 2.7e-96 356.7 212 84.0
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.3e-95 353.6 334 62.3
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.0e-90 338.2 234 73.5
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.1e-89 334.7 201 78.6
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 9.1e-84 315.1 228 71.5
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 1.7e-77 294.3 211 70.6
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.2e-73 280.0 178 78.7
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 1.5e-65 254.6 207 63.8
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 8.0e-64 248.8 350 42.3
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 2.0e-62 244.2 207 62.3
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 2.8e-61 240.4 124 90.3
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 2.2e-58 230.7 137 83.9
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 1.5e-57 228.0 291 44.3
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 2.6e-46 190.7 134 71.6
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 2.0e-38 164.5 115 73.9
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.1e-36 158.7 84 89.3
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 9.2e-36 155.6 113 74.3
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 5.9e-35 152.9 135 65.2
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 3.3e-33 147.1 112 67.9
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 1.1e-28 132.1 80 85.0
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 1.4e-23 115.2 117 57.3
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 8.3e-21 105.9 86 66.3
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 3.2e-20 104.0 65 76.9
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 3.9e-18 97.1 62 85.5
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 3.3e-17 94.0 62 80.6
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 1.1e-15 89.0 68 64.7
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 5.8e-14 83.2 58 60.3
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 5.8e-14 83.2 50 76.0
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 3.0e-10 70.9 44 77.3
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 2.6e-06 57.8 220 25.0


User provided reference genes

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