Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 4.1e-187 657.9 328 100.0
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 8.9e-118 427.6 327 66.7
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 1.1e-112 410.6 310 68.1
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 3.4e-101 372.5 341 59.8
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 7.1e-99 364.8 299 63.9
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 4.3e-96 355.5 261 69.3
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 4.6e-90 335.5 328 54.9
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 1.5e-88 330.5 331 56.8
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 4.8e-87 325.5 329 55.0
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 8.1e-87 324.7 335 52.8
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 4.0e-86 322.4 318 55.7
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 9.0e-86 321.2 328 54.9
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 7.6e-85 318.2 329 53.5
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.8e-84 315.8 323 54.2
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.8e-84 315.8 323 54.2
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 4.9e-84 315.5 329 55.3
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 6.4e-84 315.1 323 54.2
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.9e-83 313.5 329 54.4
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 2.4e-83 313.2 315 54.9
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 4.2e-83 312.4 330 53.6
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 7.1e-83 311.6 328 53.0
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 9.3e-83 311.2 297 56.6
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.2e-82 310.8 329 54.1
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 1.6e-82 310.5 330 53.9
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 1.3e-81 307.4 325 53.5
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 3.9e-81 305.8 289 56.7
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 3.9e-81 305.8 294 55.4
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 3.9e-81 305.8 324 51.2
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 1.1e-80 304.3 330 53.0
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 4.3e-80 302.4 328 51.5
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 5.6e-80 302.0 332 50.9
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 5.6e-80 302.0 300 55.0
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 1.3e-79 300.8 328 51.5
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 1.3e-79 300.8 289 55.4
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 1.3e-79 300.8 299 55.9
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 6.2e-79 298.5 326 49.1
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 8.1e-79 298.1 324 52.2
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 1.1e-78 297.7 329 50.8
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 1.4e-78 297.4 296 54.4
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 4.0e-78 295.8 329 49.2
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 4.0e-78 295.8 336 50.9
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 5.3e-78 295.4 289 54.7
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 6.9e-78 295.0 284 54.2
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 6.9e-78 295.0 330 52.4
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 6.9e-78 295.0 323 51.7
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 1.5e-77 293.9 335 51.6
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 2.6e-77 293.1 286 55.9
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 2.6e-77 293.1 336 49.7
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 2.6e-77 293.1 321 50.5
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 3.4e-77 292.7 296 53.7
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 4.5e-77 292.4 327 49.5
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 5.8e-77 292.0 327 49.2
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 1.3e-76 290.8 298 52.7
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 1.7e-76 290.4 321 50.2
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 2.2e-76 290.0 330 52.4
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 2.9e-76 289.7 289 54.3
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 3.8e-76 289.3 292 54.1
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 4.9e-76 288.9 294 53.1
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 8.4e-76 288.1 292 53.1
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 1.9e-75 287.0 309 50.8
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 1.9e-75 287.0 320 49.4
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 1.9e-75 287.0 314 51.3
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 5.5e-75 285.4 321 49.2
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 7.1e-75 285.0 302 52.0
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 9.3e-75 284.6 298 53.7
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 2.1e-74 283.5 300 52.3
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 2.7e-74 283.1 327 49.2
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 3.5e-74 282.7 294 52.0
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 4.6e-74 282.3 293 52.9
FvH4_4g25240 Fragaria vesca HOM05D006855 ORTHO05D008695 2.3e-73 280.0 279 55.9
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 3.9e-73 279.3 295 53.6
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 6.7e-73 278.5 286 53.1
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 1.9e-72 276.9 296 52.4
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 1.9e-72 276.9 293 51.9
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 1.9e-72 276.9 395 44.6
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 5.7e-72 275.4 287 53.7
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 2.1e-71 273.5 292 51.4
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 4.8e-71 272.3 294 51.7
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 1.1e-70 271.2 229 61.6
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 1.5e-69 267.3 293 50.5
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 3.4e-69 266.2 286 52.4
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 1.9e-67 260.4 287 53.7
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 1.9e-67 260.4 297 50.5
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 3.2e-67 259.6 286 51.7
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 5.5e-67 258.8 289 49.5
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 5.5e-67 258.8 297 50.5
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 9.3e-67 258.1 286 51.4
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 1.5e-64 250.8 301 47.2
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 1.9e-64 250.4 291 50.5
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 1.4e-62 244.2 283 48.1
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 3.7e-55 219.5 263 49.0
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 5.5e-51 205.7 278 41.7
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 4.7e-50 202.6 299 40.5
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.2e-44 183.7 232 44.8
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 2.9e-44 183.3 222 46.8
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 3.3e-40 169.9 167 55.1
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 8.2e-39 165.2 231 42.4
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 4.1e-38 162.9 288 37.2
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.6e-34 151.0 285 34.7
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.0e-32 144.1 234 38.0
Sabra10G0018700 Salix brachista HOM05D000933 ORTHO05D000820 3.8e-28 129.8 129 49.6
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 3.8e-28 129.8 251 35.9
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 6.5e-28 129.0 233 37.8
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 2.2e-23 114.0 170 40.6
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 5.2e-17 92.8 105 46.7
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 2.3e-12 77.4 127 39.4
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 7.3e-11 72.4 125 38.4
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 3.1e-09 67.0 49 59.2
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.8e-08 62.8 44 65.9
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.8e-08 62.8 47 61.7
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 2.4e-06 57.4 44 56.8
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 5.4e-06 56.2 48 52.1


User provided reference genes

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