Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25357 Selenicereus undatus HOM05D000693 ORTHO05D002444 3.9e-78 294.7 142 100.0
Hund25356 Selenicereus undatus HOM05D000693 ORTHO05D002444 7.1e-64 247.3 139 86.3
AUR62005392 Chenopodium quinoa HOM05D000693 ORTHO05D002444 1.5e-45 186.4 141 67.4
AUR62014054 Chenopodium quinoa HOM05D000693 ORTHO05D002444 1.7e-44 183.0 148 64.9
Sc11g0001130 Simmondsia chinensis HOM05D000693 ORTHO05D002444 6.9e-43 177.6 139 63.3
Hund06001 Selenicereus undatus HOM05D000693 ORTHO05D002444 3.4e-42 175.3 143 62.9
Ah.02g129980 Amaranthus hybridus HOM05D000693 ORTHO05D001102 1.4e-38 163.3 139 56.1
Dinv15283 Davidia involucrata HOM05D000693 ORTHO05D002444 1.2e-34 150.2 142 53.5
TAR629G3151 Trochodendron aralioides HOM05D000693 ORTHO05D002444 1.6e-34 149.8 142 56.3
Duzib251G0648 Durio zibethinus HOM05D000693 ORTHO05D002444 1.3e-33 146.7 139 57.6
QL03p059849 Quercus lobata HOM05D000693 ORTHO05D002444 6.5e-33 144.4 142 55.6
Atru.chr11.2045 Acer truncatum HOM05D000693 ORTHO05D002444 1.5e-32 143.3 125 60.0
Ah.03g132760 Amaranthus hybridus HOM05D000693 ORTHO05D002444 1.5e-32 143.3 96 68.8
Haze_12195 Corylus avellana HOM05D000693 ORTHO05D001102 1.9e-32 142.9 142 52.8
Gohir.A12G143400 Gossypium hirsutum HOM05D000693 ORTHO05D002444 1.2e-31 140.2 139 56.1
Duzib268G0613 Durio zibethinus HOM05D000693 ORTHO05D002444 1.6e-31 139.8 139 56.1
Gorai.008G159400 Gossypium raimondii HOM05D000693 ORTHO05D002444 1.0e-30 137.1 147 52.4
Thecc.02G252000 Theobroma cacao HOM05D000693 ORTHO05D002444 3.0e-30 135.6 139 54.0
Cfa009162 Carpinus fangiana HOM05D000693 ORTHO05D002444 6.7e-30 134.4 125 54.4
Gohir.D12G148100 Gossypium hirsutum HOM05D000693 ORTHO05D002444 8.8e-30 134.0 147 51.7
Manes.12G027600 Manihot esculenta HOM05D000693 ORTHO05D002444 8.8e-30 134.0 118 61.9
COL.COLO4_24188 Corchorus olitorius HOM05D000693 ORTHO05D002444 1.2e-29 133.7 139 52.5
Eucgr.H02587 Eucalyptus grandis HOM05D000693 ORTHO05D002444 2.0e-29 132.9 142 49.3
CSS0022624 Camellia sinensis var. sinensis HOM05D000693 ORTHO05D002444 2.6e-29 132.5 142 53.5
Nn3g16847 Nelumbo nucifera HOM05D000693 ORTHO05D002444 3.3e-29 132.1 125 55.2
ClCG08G017980 Citrullus lanatus HOM05D000693 ORTHO05D002444 4.4e-29 131.7 138 52.9
Sed0026964 Sechium edule HOM05D000693 ORTHO05D002444 2.2e-28 129.4 128 53.9
arahy.Tifrunner.gnm1.ann1.Q9BF43 Arachis hypogaea HOM05D000693 ORTHO05D002444 3.7e-28 128.6 142 51.4
Gohir.A01G161600 Gossypium hirsutum HOM05D000693 ORTHO05D002444 3.7e-28 128.6 125 53.6
RcHm_v2.0_Chr4g0443711 Rosa chinensis HOM05D000693 ORTHO05D002444 3.7e-28 128.6 142 50.0
ATR1091G105 Amborella trichopoda HOM05D000693 ORTHO05D002444 4.8e-28 128.3 111 58.6
MELO3C010664.2 Cucumis melo HOM05D000693 ORTHO05D002444 4.8e-28 128.3 130 54.6
CsaV3_2G024620 Cucumis sativus L. HOM05D000693 ORTHO05D002444 4.8e-28 128.3 136 50.7
Gorai.002G185100 Gossypium raimondii HOM05D000693 ORTHO05D002444 4.8e-28 128.3 125 53.6
MD13G1093500 Malus domestica HOM05D000693 ORTHO05D002444 6.3e-28 127.9 144 51.4
PGR119G0615 Punica granatum HOM05D000693 ORTHO05D002444 8.2e-28 127.5 142 50.7
arahy.Tifrunner.gnm1.ann1.LW7WL4 Arachis hypogaea HOM05D000693 ORTHO05D002444 1.1e-27 127.1 142 50.7
Hma1.2p1_0160F.1_g070960 Hydrangea macrophylla HOM05D000693 ORTHO05D002444 1.4e-27 126.7 137 50.4
Gohir.D01G149000 Gossypium hirsutum HOM05D000693 ORTHO05D002444 1.8e-27 126.3 125 52.8
Lalb_Chr09g0334961 Lupinus albus HOM05D000693 ORTHO05D002444 1.8e-27 126.3 118 59.3
MD16G1094700 Malus domestica HOM05D000693 ORTHO05D002444 1.8e-27 126.3 142 52.1
Prupe.1G251900 Prunus persica HOM05D000693 ORTHO05D002444 3.1e-27 125.6 142 50.7
GSVIVG01013760001 Vitis vinifera HOM05D000693 ORTHO05D002444 3.1e-27 125.6 135 54.1
Ciclev10032036m.g Citrus clementina HOM05D000693 ORTHO05D002444 5.3e-27 124.8 120 53.3
FvH4_4g34241 Fragaria vesca HOM05D000693 ORTHO05D002444 5.3e-27 124.8 142 51.4
Lj3A1054T85 Lonicera japonica HOM05D000693 ORTHO05D002444 9.1e-27 124.0 129 51.2
TWI75G0062 Tripterygium wilfordii HOM05D000693 ORTHO05D002444 9.1e-27 124.0 139 50.4
Actinidia13504 Actinidia chinensis HOM05D000693 ORTHO05D002444 2.0e-26 122.9 111 57.7
Gohir.A05G314100 Gossypium hirsutum HOM05D000693 ORTHO05D002444 3.5e-26 122.1 125 52.8
Gorai.009G337600 Gossypium raimondii HOM05D000693 ORTHO05D002444 7.7e-26 120.9 125 52.8
Medtr8g064820 Medicago truncatula HOM05D000693 ORTHO05D002444 1.3e-25 120.2 142 47.9
PSO170G0360 Papaver somniferum HOM05D000693 ORTHO05D002444 1.3e-25 120.2 139 47.5
PSO210G2533 Papaver somniferum HOM05D000693 ORTHO05D002444 1.3e-25 120.2 139 47.5
FAN17G1681 Fragaria x ananassa HOM05D000693 ORTHO05D002444 2.9e-25 119.0 136 50.7
Gohir.D05G315600 Gossypium hirsutum HOM05D000693 ORTHO05D002444 2.9e-25 119.0 125 51.2
Oeu056404.1 Olea europaea HOM05D000693 ORTHO05D002444 5.0e-25 118.2 119 52.1
FAN07G0393 Fragaria x ananassa HOM05D000693 ORTHO05D001102 1.1e-24 117.1 136 50.0
Ca_22670_v3 Cicer arietinum L. HOM05D000693 ORTHO05D002444 1.5e-24 116.7 146 46.6
Potri.010G041700 Populus trichocarpa HOM05D000693 ORTHO05D002444 1.5e-24 116.7 147 48.3
TPR.G11684 Trifolium pratense HOM05D000693 ORTHO05D002444 1.5e-24 116.7 141 48.2
FAN22G1713 Fragaria x ananassa HOM05D000693 ORTHO05D002444 4.2e-24 115.2 136 50.0
CDE06G2720 Ceratophyllum demersum HOM05D000693 ORTHO05D002444 1.6e-23 113.2 130 48.5
Glyma.08G285800 Glycine max HOM05D000693 ORTHO05D002444 1.6e-23 113.2 142 49.3
Os09g0327550 Oryza sativa ssp. japonica HOM05D000693 ORTHO05D002444 1.6e-23 113.2 111 51.4
CANSAT01G1778 Cannabis sativa HOM05D000693 ORTHO05D002444 2.1e-23 112.8 137 48.9
Rhsim12G0116500 Rhododendron simsii HOM05D000693 ORTHO05D002444 2.1e-23 112.8 142 47.2
Sabra10G0025700 Salix brachista HOM05D000693 ORTHO05D002444 8.0e-23 110.9 145 46.9
vmacro16238 Vaccinium macrocarpon HOM05D000693 ORTHO05D002444 8.0e-23 110.9 111 53.2
CDE02G1567 Ceratophyllum demersum HOM05D000693 ORTHO05D002444 1.0e-22 110.5 132 47.0
DCAR_026535 Daucus carota HOM05D000693 ORTHO05D002444 2.3e-22 109.4 94 59.6
MBI16_g27092_MAGBIO Magnolia biondii HOM05D000693 ORTHO05D002444 3.0e-22 109.0 89 59.6
Phvul.003G061200 Phaseolus vulgaris HOM05D000693 ORTHO05D002444 3.0e-22 109.0 142 47.2
SGA_v2.0_scaffold165G38236 Striga asiatica HOM05D000693 ORTHO05D002444 5.2e-22 108.2 122 48.4
A07p36860 Brassica napus HOM05D000693 ORTHO05D002444 8.8e-22 107.5 140 45.7
Aqoxy3G02921 Aquilegia oxysepala HOM05D000693 ORTHO05D002444 1.2e-21 107.1 125 45.6
HanXRQChr12g0383561 Helianthus annuus HOM05D000693 ORTHO05D002444 1.2e-21 107.1 145 42.8
Nitab4.5_0000069g0380 Nicotiana tabacum HOM05D000693 ORTHO05D002444 1.5e-21 106.7 125 45.6
Cpa.g.sc69.58 Carica papaya HOM05D000693 ORTHO05D002444 2.0e-21 106.3 125 49.6
THA.LOC104822970 Tarenaya hassleriana HOM05D000693 ORTHO05D002444 2.0e-21 106.3 144 47.9
VMungo0251G3059 Vigna mungo HOM05D000693 ORTHO05D002444 2.6e-21 105.9 146 45.9
BcaC08g46490 Brassica carinata HOM05D000693 ORTHO05D002444 3.4e-21 105.5 136 46.3
C06p44330 Brassica napus HOM05D000693 ORTHO05D002444 3.4e-21 105.5 136 46.3
BolC6t39504H Brassica oleracea HOM05D000693 ORTHO05D002444 3.4e-21 105.5 136 46.3
Glyma.18G139000 Glycine max HOM05D000693 ORTHO05D002444 3.4e-21 105.5 139 46.0
Cc11_g14740 Coffea canephora HOM05D000693 ORTHO05D002444 4.4e-21 105.1 114 44.7
FAN12G0379 Fragaria x ananassa HOM05D000693 ORTHO05D002444 4.4e-21 105.1 80 63.8
Nitab4.5_0004039g0040 Nicotiana tabacum HOM05D000693 ORTHO05D002444 5.7e-21 104.8 125 44.8
Lsat_1_v5_gn_4_5501 Lactuca sativa HOM05D000693 ORTHO05D002444 2.8e-20 102.4 117 47.0
BraA07t31251Z Brassica rapa HOM05D000693 ORTHO05D002444 4.8e-20 101.7 117 50.4
AL2G29850 Arabidopsis lyrata HOM05D000693 ORTHO05D002444 6.3e-20 101.3 130 46.9
Thhalv10019595m.g Eutrema salsugineum HOM05D000693 ORTHO05D002444 6.3e-20 101.3 125 48.0
CAN.G282.68 Capsicum annuum HOM05D000693 ORTHO05D002444 8.3e-20 100.9 125 44.8
SalBow2G3571 Salvia bowleyana HOM05D000693 ORTHO05D000554 8.3e-20 100.9 150 40.0
Zm00001eb098280 Zea mays HOM05D000693 ORTHO05D002444 8.3e-20 100.9 112 46.4
HPP92_008037 Vanilla planifolia HOM05D000693 ORTHO05D002444 1.1e-19 100.5 106 48.1
Carub.0002s1716 Capsella rubella HOM05D000693 ORTHO05D002444 1.4e-19 100.1 132 45.5
Peaxi162Scf00952g00021 Petunia axillaris HOM05D000693 ORTHO05D002444 1.4e-19 100.1 124 44.4
AT1G70480 Arabidopsis thaliana HOM05D000693 ORTHO05D002444 2.0e-18 96.3 116 50.0
Aa31LG4G10470 Aethionema arabicum HOM05D000693 ORTHO05D002444 2.7e-18 95.9 144 42.4
CARHR063640 Cardamine hirsuta HOM05D000693 ORTHO05D002444 2.7e-18 95.9 130 44.6
Migut.L01419 Erythranthe guttata HOM05D000693 ORTHO05D002444 2.7e-18 95.9 140 40.7
Solyc01g008010.3 Solanum lycopersicum HOM05D000693 ORTHO05D002444 2.7e-18 95.9 132 41.7
Sopen01g003570 Solanum pennellii HOM05D000693 ORTHO05D002444 2.7e-18 95.9 132 41.7
Lj4g0011834 Lotus japonicus HOM05D000693 ORTHO05D002444 3.5e-18 95.5 66 65.2
MSTRG.593 Avicennia marina HOM05D000693 ORTHO05D002444 4.5e-18 95.1 110 44.5
PGSC0003DMG401016407 Solanum tuberosum HOM05D000693 ORTHO05D002444 7.7e-18 94.4 130 41.5
Sp5g25550 Schrenkiella parvula HOM05D000693 ORTHO05D002444 2.3e-17 92.8 141 43.3
Thhalv10008158m.g Eutrema salsugineum HOM05D000693 ORTHO05D002444 2.9e-17 92.4 67 59.7
ECA234G3969 Erigeron canadensis HOM05D000693 ORTHO05D002444 1.1e-16 90.5 112 44.6
SEGI_38479 Sequoiadendron giganteum HOM05D000693 ORTHO05D002444 3.3e-16 89.0 91 53.8
BcaB03g11952 Brassica carinata HOM05D000693 ORTHO05D002444 7.2e-16 87.8 66 59.1
A08p28090 Brassica napus HOM05D000693 ORTHO05D002444 7.2e-16 87.8 66 59.1
BraA08t34735Z Brassica rapa HOM05D000693 ORTHO05D002444 7.2e-16 87.8 66 59.1
BcaC07g39212 Brassica carinata HOM05D000693 ORTHO05D002444 9.5e-16 87.4 117 42.7
BolC8t49852H Brassica oleracea HOM05D000693 ORTHO05D002444 1.2e-15 87.0 117 42.7
C08p22080 Brassica napus HOM05D000693 ORTHO05D002444 1.6e-15 86.7 87 48.3
CARHR023990 Cardamine hirsuta HOM05D000693 ORTHO05D002444 1.6e-15 86.7 120 37.5
Aa31LG7G7500 Aethionema arabicum HOM05D000693 ORTHO05D002444 2.1e-15 86.3 86 48.8
Carub.0001s2310 Capsella rubella HOM05D000693 ORTHO05D002444 2.1e-15 86.3 114 42.1
THA.LOC104822153 Tarenaya hassleriana HOM05D000693 ORTHO05D002444 2.1e-15 86.3 105 45.7
Sp1g21020 Schrenkiella parvula HOM05D000693 ORTHO05D002444 4.7e-15 85.1 82 50.0
AT1G23560 Arabidopsis thaliana HOM05D000693 ORTHO05D002444 8.0e-15 84.3 114 43.0
BcaB03g14140 Brassica carinata HOM05D000693 ORTHO05D002444 1.4e-14 83.6 110 41.8
AL1G37320 Arabidopsis lyrata HOM05D000693 ORTHO05D002444 1.8e-14 83.2 121 40.5
BcaC06g35046 Brassica carinata HOM05D000693 ORTHO05D002444 1.8e-14 83.2 111 42.3
C07p20350 Brassica napus HOM05D000693 ORTHO05D002444 1.8e-14 83.2 113 42.5
BolC7t42555H Brassica oleracea HOM05D000693 ORTHO05D002444 1.8e-14 83.2 111 42.3
BraA07t29131Z Brassica rapa HOM05D000693 ORTHO05D002444 1.8e-14 83.2 111 42.3
A07p13820 Brassica napus HOM05D000693 ORTHO05D002444 2.3e-14 82.8 111 42.3
SMO356G0741 Selaginella moellendorffii HOM05D000693 ORTHO05D002444 3.0e-14 82.4 60 60.0
Pp3c1_10570 Physcomitrium patens HOM05D000693 ORTHO05D002444 4.0e-14 82.0 72 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4112 Anthoceros agrestis HOM05D000693 ORTHO05D002444 1.2e-13 80.5 66 48.5
Mapoly0075s0073 Marchantia polymorpha HOM05D000693 ORTHO05D002444 3.4e-13 79.0 111 37.8
EL10Ac6g13690 Beta vulgaris HOM05D000693 ORTHO05D002444 7.5e-13 77.8 43 79.1
Psat4g124640 Pisum sativum HOM05D000693 ORTHO05D002444 8.3e-12 74.3 41 78.0
Pp3c15_5040 Physcomitrium patens HOM05D000693 ORTHO05D002444 2.0e-10 69.7 66 48.5
Pp3c26_13080 Physcomitrium patens HOM05D000693 ORTHO05D002444 1.0e-09 67.4 47 55.3
CiPaw.05G152400 Carya illinoinensis HOM05D000693 ORTHO05D002444 3.8e-09 65.5 101 41.6
CBR_g38945 Chara braunii HOM05D000693 ORTHO05D002444 3.8e-09 65.5 64 50.0
Mapoly0003s0242 Marchantia polymorpha HOM05D000693 ORTHO05D002444 3.3e-08 62.4 46 50.0
CBR_g5660 Chara braunii HOM05D000693 ORTHO05D002444 7.3e-08 61.2 48 54.2
Pp3c6_270 Physcomitrium patens HOM05D000693 ORTHO05D002444 2.8e-07 59.3 47 53.2
Pp3c7_20050 Physcomitrium patens HOM05D000693 ORTHO05D002444 8.0e-07 57.8 69 40.6
Pp3c2_10400 Physcomitrium patens HOM05D000693 ORTHO05D002444 1.4e-06 57.0 45 46.7
AL1G37420 Arabidopsis lyrata HOM05D000693 ORTHO05D002444 3.0e-06 55.8 66 42.4
AT1G23670 Arabidopsis thaliana HOM05D000693 ORTHO05D002444 4.0e-06 55.5 67 43.3
THA.LOC109117023 Tarenaya hassleriana HOM05D000693 ORTHO05D002444 4.0e-06 55.5 41 58.5
Carub.0001s2319 Capsella rubella HOM05D000693 ORTHO05D002444 5.2e-06 55.1 66 37.9


User provided reference genes

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