Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 5.7e-86 320.9 160 100.0
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 2.2e-53 212.6 155 73.5
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.4e-52 209.9 184 64.7
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 6.2e-48 194.5 158 66.5
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 7.6e-46 187.6 157 62.4
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 7.6e-46 187.6 157 62.4
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 2.2e-45 186.0 153 64.1
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.1e-44 183.7 163 62.0
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 7.1e-44 181.0 164 62.2
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 1.6e-43 179.9 156 61.5
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 2.1e-43 179.5 158 62.7
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 2.1e-43 179.5 158 62.7
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.1e-43 179.5 159 61.6
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 1.0e-42 177.2 162 61.1
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 1.7e-42 176.4 158 61.4
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 2.3e-42 176.0 159 61.6
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 3.9e-42 175.3 158 59.5
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 3.9e-42 175.3 152 61.8
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 5.1e-42 174.9 162 61.1
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 5.1e-42 174.9 158 59.5
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 1.1e-41 173.7 158 60.1
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 4.3e-41 171.8 158 59.5
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 4.3e-41 171.8 156 58.3
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 4.3e-41 171.8 157 59.2
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 5.6e-41 171.4 151 61.6
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 7.3e-41 171.0 156 60.3
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 7.3e-41 171.0 158 57.6
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 9.6e-41 170.6 156 58.3
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 1.2e-40 170.2 161 59.6
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 1.2e-40 170.2 158 58.9
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 1.6e-40 169.9 155 58.7
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.1e-40 169.5 158 57.6
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.1e-40 169.5 158 57.6
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 2.1e-40 169.5 158 57.6
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 2.8e-40 169.1 158 58.9
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 2.8e-40 169.1 149 61.1
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 4.7e-40 168.3 160 58.8
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 4.7e-40 168.3 160 58.8
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 4.7e-40 168.3 149 60.4
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 4.7e-40 168.3 162 58.6
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 6.2e-40 167.9 155 58.1
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 6.2e-40 167.9 156 59.0
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.1e-39 167.2 154 60.4
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 1.4e-39 166.8 149 61.1
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 2.4e-39 166.0 158 60.1
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 2.4e-39 166.0 150 60.0
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 5.3e-39 164.9 160 59.4
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 6.9e-39 164.5 148 59.5
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 9.0e-39 164.1 155 57.4
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 9.0e-39 164.1 150 58.7
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 1.2e-38 163.7 157 56.7
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 2.0e-38 162.9 157 58.6
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 2.6e-38 162.5 181 53.0
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 4.4e-38 161.8 160 53.1
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 5.8e-38 161.4 149 58.4
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 5.8e-38 161.4 150 57.3
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 1.3e-37 160.2 157 55.4
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 1.7e-37 159.8 150 57.3
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 1.7e-37 159.8 149 58.4
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 1.7e-37 159.8 156 55.8
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 2.2e-37 159.5 150 57.3
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 2.2e-37 159.5 159 57.2
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 2.2e-37 159.5 160 56.9
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 2.9e-37 159.1 147 58.5
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 2.9e-37 159.1 154 55.2
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 2.9e-37 159.1 155 54.8
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 3.8e-37 158.7 147 58.5
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 3.8e-37 158.7 153 56.2
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 1.1e-36 157.1 150 57.3
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.1e-36 157.1 155 58.1
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 1.9e-36 156.4 156 54.5
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 5.4e-36 154.8 147 57.8
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 5.4e-36 154.8 156 55.1
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 1.2e-35 153.7 155 54.8
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 1.6e-35 153.3 155 54.8
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 1.6e-35 153.3 151 57.6
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 4.6e-35 151.8 147 55.1
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 6.0e-35 151.4 150 56.0
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 8.7e-34 147.5 148 55.4
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 1.3e-32 143.7 150 52.7
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 2.1e-32 142.9 156 51.9
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 3.6e-32 142.1 154 51.9
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 4.8e-32 141.7 161 53.4
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 8.1e-32 141.0 175 50.3
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 8.1e-32 141.0 154 51.3
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.8e-31 139.8 154 50.6
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 6.9e-31 137.9 165 51.5
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 6.9e-31 137.9 150 49.3
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 1.5e-30 136.7 151 48.3
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 3.4e-30 135.6 154 47.4
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 7.6e-30 134.4 152 48.7
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 2.2e-29 132.9 148 48.6
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 2.9e-29 132.5 130 55.4
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 6.4e-29 131.3 150 48.7
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 6.4e-29 131.3 149 51.0
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 1.1e-28 130.6 130 54.6
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 1.1e-28 130.6 150 48.0
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 1.1e-28 130.6 149 46.3
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 1.9e-28 129.8 154 48.7
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 2.4e-28 129.4 141 49.6
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 5.4e-28 128.3 152 48.7
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 5.4e-28 128.3 149 50.3
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 1.2e-27 127.1 152 46.1
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 7.9e-27 124.4 159 47.2
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 1.3e-26 123.6 150 50.0
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.0e-26 122.5 144 50.0
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 1.1e-25 120.6 122 54.1
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 5.6e-25 118.2 160 43.1
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 7.4e-25 117.9 123 51.2
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.3e-24 117.1 122 50.8
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 2.1e-24 116.3 140 47.1
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 4.8e-24 115.2 70 77.1
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 1.8e-23 113.2 161 42.9
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.4e-23 112.8 152 43.4
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 9.0e-23 110.9 69 75.4
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 2.0e-22 109.8 119 50.4
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 2.6e-22 109.4 70 71.4
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 9.9e-22 107.5 152 42.1
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 2.2e-21 106.3 152 42.1
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 5.5e-20 101.7 117 49.6
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 1.6e-19 100.1 135 42.2
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 1.8e-18 96.7 140 41.4
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 9.6e-17 90.9 100 49.0
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.4e-15 87.0 125 43.2
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 2.0e-14 83.2 100 53.0
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.3e-13 80.5 60 65.0
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 3.3e-09 65.9 49 59.2
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 1.3e-08 63.9 48 64.6
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 3.7e-08 62.4 97 45.4
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 1.8e-07 60.1 131 32.1
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 2.4e-07 59.7 47 59.6


User provided reference genes

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