Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.6e-100 368.6 173 100.0
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 9.0e-77 290.4 177 78.0
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 2.5e-71 272.3 141 88.7
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 5.6e-71 271.2 137 91.2
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 2.8e-70 268.9 136 90.4
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 1.7e-67 259.6 170 72.4
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 4.2e-66 255.0 172 72.1
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.2e-66 255.0 152 78.9
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-65 253.4 147 79.6
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 2.1e-65 252.7 175 70.3
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.7e-65 252.3 174 71.8
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 2.7e-65 252.3 177 70.6
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 7.9e-65 250.8 147 78.9
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 1.0e-64 250.4 144 79.2
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-64 250.0 143 80.4
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 1.8e-64 249.6 175 69.1
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-64 249.6 175 69.7
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-64 249.2 176 69.3
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 2.3e-64 249.2 147 79.6
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 2.3e-64 249.2 177 70.1
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 3.9e-64 248.4 177 70.1
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 3.9e-64 248.4 178 69.7
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 5.1e-64 248.1 147 78.9
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 5.1e-64 248.1 147 78.9
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 6.7e-64 247.7 174 70.1
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 6.7e-64 247.7 147 79.6
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 6.7e-64 247.7 177 68.4
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 6.7e-64 247.7 179 70.9
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 6.7e-64 247.7 173 69.4
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 6.7e-64 247.7 173 69.4
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 8.7e-64 247.3 147 77.6
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 8.7e-64 247.3 147 78.9
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.1e-63 246.9 169 69.8
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 1.1e-63 246.9 132 84.8
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.1e-63 246.9 147 76.9
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.5e-63 246.5 169 68.0
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.5e-63 246.5 174 70.1
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 1.5e-63 246.5 136 83.1
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 1.9e-63 246.1 171 69.6
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 2.5e-63 245.7 174 70.1
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 2.5e-63 245.7 147 77.6
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 2.5e-63 245.7 177 68.9
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 4.3e-63 245.0 143 76.2
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 4.3e-63 245.0 147 76.9
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 5.6e-63 244.6 136 82.4
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 7.4e-63 244.2 147 76.2
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 9.6e-63 243.8 147 77.6
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.3e-62 243.4 179 68.2
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 2.1e-62 242.7 161 72.7
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 2.8e-62 242.3 176 68.2
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.8e-62 242.3 136 80.9
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 2.8e-62 242.3 173 67.6
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 3.7e-62 241.9 175 69.1
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 3.7e-62 241.9 147 76.9
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 3.7e-62 241.9 147 78.2
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 3.7e-62 241.9 147 78.2
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 3.7e-62 241.9 175 66.3
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 3.7e-62 241.9 180 68.3
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 3.7e-62 241.9 158 72.8
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 4.8e-62 241.5 173 68.2
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 4.8e-62 241.5 136 80.9
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 6.2e-62 241.1 161 72.0
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 6.2e-62 241.1 159 73.0
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 8.1e-62 240.7 136 78.7
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 8.1e-62 240.7 170 69.4
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 8.1e-62 240.7 148 78.4
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 8.1e-62 240.7 143 77.6
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 8.1e-62 240.7 168 69.6
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.4e-61 240.0 174 67.8
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.8e-61 239.6 143 77.6
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 1.8e-61 239.6 175 66.9
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 1.8e-61 239.6 178 68.5
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 1.8e-61 239.6 147 76.2
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 1.8e-61 239.6 135 81.5
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 1.8e-61 239.6 173 69.4
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 2.4e-61 239.2 178 68.5
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 3.1e-61 238.8 148 75.7
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 3.1e-61 238.8 148 75.7
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 3.1e-61 238.8 173 66.5
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 3.1e-61 238.8 173 66.5
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 3.1e-61 238.8 173 66.5
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.0e-61 238.4 174 66.7
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 5.3e-61 238.0 158 71.5
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 6.9e-61 237.7 145 75.2
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 9.0e-61 237.3 173 66.5
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.2e-60 236.9 171 69.6
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 1.5e-60 236.5 175 64.6
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 1.5e-60 236.5 175 65.7
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.0e-60 236.1 147 74.8
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.0e-60 236.1 147 74.8
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 4.5e-60 235.0 172 67.4
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 7.6e-60 234.2 176 64.8
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.0e-59 233.8 148 74.3
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 1.7e-59 233.0 176 64.8
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 1.7e-59 233.0 176 64.8
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 2.2e-59 232.6 177 65.0
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.8e-59 231.9 174 65.5
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 4.9e-59 231.5 175 64.6
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 4.9e-59 231.5 175 64.6
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 4.9e-59 231.5 175 64.6
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 4.9e-59 231.5 136 77.2
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 6.5e-59 231.1 122 84.4
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 6.5e-59 231.1 147 72.1
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 6.5e-59 231.1 148 73.0
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 6.5e-59 231.1 173 64.2
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 8.4e-59 230.7 147 71.4
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 1.1e-58 230.3 147 75.5
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.4e-58 229.9 133 78.9
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-58 229.9 147 73.5
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 1.9e-58 229.6 147 71.4
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.9e-58 229.6 160 68.8
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 9.3e-58 227.3 145 71.7
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 9.3e-58 227.3 176 63.6
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 9.3e-58 227.3 176 63.6
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 1.2e-57 226.9 148 71.6
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.6e-57 226.5 148 69.6
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 2.7e-57 225.7 136 77.2
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.0e-56 222.2 148 70.3
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.1e-55 220.3 124 79.0
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 1.5e-55 219.9 142 69.0
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.6e-54 216.5 150 68.0
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 9.0e-53 210.7 136 76.5
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 1.2e-49 200.3 121 73.6
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 4.3e-47 191.8 170 59.4
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 4.3e-47 191.8 170 59.4
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 7.4e-47 191.0 190 56.3
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.8e-45 186.4 170 55.3
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.2e-44 183.7 173 55.5
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 4.3e-39 165.2 91 81.3
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.4e-36 155.6 91 78.0
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.0e-35 154.1 128 61.7
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.1e-33 146.4 128 57.8
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 1.4e-32 143.7 74 87.8
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 8.8e-32 141.0 161 46.6
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.1e-29 132.1 82 72.0
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 3.2e-26 122.5 140 46.4
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 3.0e-24 115.9 83 65.1
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 3.0e-24 115.9 61 86.9
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.0e-23 113.2 144 34.7
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.4e-21 107.1 102 52.0
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 1.0e-19 100.9 79 63.3
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.5e-18 96.3 64 68.8
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.2e-18 94.7 57 71.9
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.4e-15 85.5 55 70.9
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 2.0e-12 76.6 52 63.5


User provided reference genes

Program Settings