Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 0.0e+00 1274.2 664 100.0
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 9.2e-122 441.8 575 53.0
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.3e-94 351.7 578 47.4
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 3.1e-85 320.5 498 50.4
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 3.1e-69 267.3 706 35.0
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 2.0e-68 264.6 617 37.3
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 4.2e-66 256.9 637 35.9
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 9.4e-66 255.8 616 35.9
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 5.2e-64 250.0 610 35.7
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 8.8e-64 249.2 682 35.2
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 8.8e-64 249.2 682 35.2
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.1e-63 248.8 605 38.7
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 1.7e-62 245.0 689 34.8
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.4e-61 241.9 657 35.3
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 3.5e-60 237.3 634 35.6
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 7.7e-60 236.1 562 35.2
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 6.5e-59 233.0 655 35.6
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 1.9e-58 231.5 710 31.8
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 5.5e-58 229.9 703 32.9
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.2e-57 228.8 749 31.4
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 2.1e-57 228.0 690 34.3
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 2.7e-57 227.6 725 33.4
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 1.4e-56 225.3 674 33.2
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 2.6e-55 221.1 566 34.6
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 2.6e-55 221.1 715 31.7
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 9.7e-55 219.2 633 34.8
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 1.4e-53 215.3 536 37.5
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 4.1e-53 213.8 570 33.5
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.2e-52 212.2 684 32.9
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.6e-52 211.8 667 33.1
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 2.7e-52 211.1 649 32.4
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.0e-51 209.1 718 33.8
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 2.9e-51 207.6 683 33.1
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 3.8e-51 207.2 613 34.6
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 6.5e-51 206.5 571 35.2
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 1.5e-50 205.3 662 33.5
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.2e-50 203.8 679 32.1
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 9.4e-50 202.6 596 33.9
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 6.1e-49 199.9 588 35.7
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 8.0e-49 199.5 602 33.2
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 1.2e-47 195.7 563 33.0
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 1.5e-47 195.3 578 34.1
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 4.4e-47 193.7 720 29.4
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 7.5e-47 193.0 690 31.9
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 2.2e-46 191.4 656 32.6
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 3.7e-46 190.7 553 33.8
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 4.8e-46 190.3 549 34.4
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 6.3e-46 189.9 660 32.3
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 1.8e-45 188.3 642 32.7
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 4.1e-45 187.2 610 31.8
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 5.4e-45 186.8 164 61.6
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 7.0e-45 186.4 657 31.2
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 1.6e-44 185.3 628 33.0
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.6e-44 185.3 580 33.1
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 2.7e-44 184.5 656 31.9
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 1.3e-43 182.2 719 31.0
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 1.3e-43 182.2 573 32.1
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 1.7e-43 181.8 576 31.9
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 2.2e-43 181.4 665 31.9
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 5.0e-43 180.3 542 32.1
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 8.5e-43 179.5 542 32.1
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 2.8e-41 174.5 668 31.1
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 3.6e-41 174.1 586 31.2
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 8.0e-41 172.9 731 29.5
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.4e-40 172.2 621 31.2
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 1.4e-40 172.2 601 34.8
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 2.3e-40 171.4 594 33.3
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 2.3e-40 171.4 782 28.1
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 4.0e-40 170.6 616 30.7
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 5.2e-40 170.2 605 31.1
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 8.8e-40 169.5 606 31.2
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 8.8e-40 169.5 174 56.3
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.2e-39 169.1 173 58.4
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.2e-39 169.1 560 32.1
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 7.5e-39 166.4 612 30.9
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 4.9e-38 163.7 587 33.0
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 8.3e-38 162.9 657 30.0
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 1.8e-37 161.8 671 31.3
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 3.1e-37 161.0 633 29.7
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.6e-36 158.7 163 57.1
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 2.7e-36 157.9 615 30.9
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 3.5e-36 157.5 600 30.2
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.3e-35 154.8 715 29.5
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 2.9e-35 154.5 414 36.0
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 8.6e-35 152.9 662 31.4
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 8.6e-35 152.9 135 63.7
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 5.6e-34 150.2 615 30.2
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 9.5e-34 149.4 176 51.1
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 2.1e-33 148.3 444 31.1
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.8e-32 145.2 661 31.2
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 2.3e-32 144.8 643 29.7
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 4.0e-32 144.1 557 30.0
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 6.8e-32 143.3 615 30.9
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 1.2e-31 142.5 610 30.0
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 3.4e-31 141.0 568 32.0
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 9.8e-31 139.4 560 30.0
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.3e-30 139.0 654 30.3
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 8.3e-30 136.3 151 55.0
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 1.1e-29 136.0 573 31.4
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 2.4e-29 134.8 174 50.6
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.2e-29 134.4 110 64.5
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 3.2e-29 134.4 634 30.8
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 7.0e-29 133.3 571 29.6
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 1.6e-28 132.1 576 28.3
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 3.5e-28 131.0 445 32.8
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 4.6e-28 130.6 160 51.9
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 3.0e-27 127.9 457 32.4
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 5.0e-27 127.1 167 49.1
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 6.6e-27 126.7 187 47.1
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 1.1e-26 125.9 157 49.0
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 4.3e-26 124.0 136 52.2
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 9.5e-26 122.9 614 31.1
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 1.2e-25 122.5 583 28.5
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 2.1e-25 121.7 593 29.0
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.8e-25 121.3 637 29.7
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 6.2e-25 120.2 599 28.0
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 2.3e-24 118.2 588 30.3
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 4.0e-24 117.5 508 28.9
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 8.9e-24 116.3 163 44.8
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 7.5e-23 113.2 103 58.3
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.7e-22 112.1 677 29.1
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 2.2e-22 111.7 139 49.6
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 2.9e-22 111.3 632 27.1
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 2.4e-21 108.2 141 46.8
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 9.2e-21 106.3 433 30.7
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 1.2e-20 105.9 181 44.8
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 2.0e-20 105.1 163 43.6
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 3.5e-20 104.4 69 73.9
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 3.5e-20 104.4 86 61.6
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 1.0e-19 102.8 86 60.5
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 3.9e-19 100.9 86 61.6
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 5.0e-19 100.5 131 45.8
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.9e-18 98.6 316 32.6
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 2.8e-17 94.7 493 28.4
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 4.7e-17 94.0 440 29.3
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 1.5e-15 89.0 105 47.6
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 3.4e-15 87.8 460 27.2
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 3.4e-15 87.8 583 27.3
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 5.4e-13 80.5 669 27.4
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 1.2e-12 79.3 654 27.2
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 2.5e-10 71.6 478 26.6
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 2.5e-10 71.6 642 25.9
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 4.3e-10 70.9 470 25.3
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 1.4e-08 65.9 505 24.2


User provided reference genes

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