Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25143 Selenicereus undatus HOM05D000764 ORTHO05D018913 2.9e-34 147.9 71 100.0
CiPaw.13G175200 Carya illinoinensis HOM05D000764 ORTHO05D002006 2.2e-13 78.6 63 55.6
Cfa009591 Carpinus fangiana HOM05D000764 ORTHO05D002006 6.4e-13 77.0 63 54.0
Haze_22960 Corylus avellana HOM05D000764 ORTHO05D002006 8.3e-13 76.6 66 54.5
Haze_22966 Corylus avellana HOM05D000764 ORTHO05D002006 8.3e-13 76.6 66 54.5
CiPaw.14G134800 Carya illinoinensis HOM05D000764 ORTHO05D002006 1.1e-12 76.3 62 54.8
QL01p008424 Quercus lobata HOM05D000764 ORTHO05D002006 1.9e-12 75.5 62 56.5
QL01p008442 Quercus lobata HOM05D000764 ORTHO05D002006 1.9e-12 75.5 62 56.5
Ah.06g190560 Amaranthus hybridus HOM05D000764 ORTHO05D002006 9.2e-12 73.2 64 53.1
Cfa009592 Carpinus fangiana HOM05D000764 ORTHO05D002006 9.2e-12 73.2 66 53.0
Ciclev10014404m.g Citrus clementina HOM05D000764 ORTHO05D002006 1.6e-11 72.4 65 46.2
Cfa009594 Carpinus fangiana HOM05D000764 ORTHO05D002006 2.1e-11 72.0 66 51.5
Ciclev10014402m.g Citrus clementina HOM05D000764 ORTHO05D002006 4.6e-11 70.9 65 47.7
GSVIVG01025429001 Vitis vinifera HOM05D000764 ORTHO05D002006 4.6e-11 70.9 62 48.4
CANSAT78G0430 Cannabis sativa HOM05D000764 ORTHO05D002006 6.0e-11 70.5 63 52.4
Hund21637 Selenicereus undatus HOM05D000764 ORTHO05D002006 6.0e-11 70.5 62 53.2
MD03G1006300 Malus domestica HOM05D000764 ORTHO05D002006 7.8e-11 70.1 62 45.2
CANSAT78G1467 Cannabis sativa HOM05D000764 ORTHO05D002006 1.0e-10 69.7 63 52.4
GSVIVG01025430001 Vitis vinifera HOM05D000764 ORTHO05D002006 3.0e-10 68.2 62 48.4
Sc09g0000160 Simmondsia chinensis HOM05D000764 ORTHO05D002006 5.1e-10 67.4 72 50.0
FAN16G1610 Fragaria x ananassa HOM05D000764 ORTHO05D002006 6.6e-10 67.0 64 46.9
RcHm_v2.0_Chr5g0083011 Rosa chinensis HOM05D000764 ORTHO05D002006 8.6e-10 66.6 64 50.0
Potri.001G006700 Populus trichocarpa HOM05D000764 ORTHO05D002006 1.9e-09 65.5 62 46.8
TWI60G0363 Tripterygium wilfordii HOM05D000764 ORTHO05D002006 1.9e-09 65.5 62 48.4
FvH4_3g45320 Fragaria vesca HOM05D000764 ORTHO05D002006 2.5e-09 65.1 64 46.9
FAN11G2962 Fragaria x ananassa HOM05D000764 ORTHO05D002006 2.5e-09 65.1 64 46.9
Lj1C544G1 Lonicera japonica HOM05D000764 ORTHO05D002006 2.5e-09 65.1 69 46.4
Sabra01G0005200 Salix brachista HOM05D000764 ORTHO05D002006 2.5e-09 65.1 62 45.2
MELO3C014682.2 Cucumis melo HOM05D000764 ORTHO05D002006 3.3e-09 64.7 63 46.0
Potri.001G006600 Populus trichocarpa HOM05D000764 ORTHO05D002006 3.3e-09 64.7 61 44.3
FAN21G0552 Fragaria x ananassa HOM05D000764 ORTHO05D002006 4.3e-09 64.3 63 47.6
Lj1A542T43 Lonicera japonica HOM05D000764 ORTHO05D002006 4.3e-09 64.3 69 46.4
Lj1A545G61 Lonicera japonica HOM05D000764 ORTHO05D011045 4.3e-09 64.3 69 46.4
TAR636G3372 Trochodendron aralioides HOM05D000764 ORTHO05D002006 4.3e-09 64.3 65 46.2
EL10Ac4g10364 Beta vulgaris HOM05D000764 ORTHO05D002006 7.3e-09 63.5 71 45.1
Lj1C547G1 Lonicera japonica HOM05D000764 ORTHO05D002006 7.3e-09 63.5 69 44.9
Sabra01G0004900 Salix brachista HOM05D000764 ORTHO05D002006 7.3e-09 63.5 62 43.5
MELO3C031046.2 Cucumis melo HOM05D000764 ORTHO05D002006 9.5e-09 63.2 63 44.4
CsaV3_4G023320 Cucumis sativus L. HOM05D000764 ORTHO05D002006 9.5e-09 63.2 63 44.4
AUR62019181 Chenopodium quinoa HOM05D000764 ORTHO05D002006 1.6e-08 62.4 63 44.4
MELO3C014683.2 Cucumis melo HOM05D000764 ORTHO05D002006 1.6e-08 62.4 63 44.4
Hma1.2p1_0843F.1_g227270 Hydrangea macrophylla HOM05D000764 ORTHO05D002006 1.6e-08 62.4 65 43.1
RcHm_v2.0_Chr5g0083091 Rosa chinensis HOM05D000764 ORTHO05D002006 2.1e-08 62.0 64 46.9
Manes.03G087803 Manihot esculenta HOM05D000764 ORTHO05D002006 3.6e-08 61.2 62 41.9
Oeu024286.2 Olea europaea HOM05D000764 ORTHO05D002006 3.6e-08 61.2 62 43.5
SHI31278 Sapria himalayana HOM05D000764 ORTHO05D018913 3.6e-08 61.2 63 42.9
Actinidia06846 Actinidia chinensis HOM05D000764 ORTHO05D002006 4.7e-08 60.8 66 51.5
Duzib150G1253 Durio zibethinus HOM05D000764 ORTHO05D002006 6.2e-08 60.5 65 43.1
Gohir.D13G216800 Gossypium hirsutum HOM05D000764 ORTHO05D002006 6.2e-08 60.5 64 40.6
Gorai.013G247300 Gossypium raimondii HOM05D000764 ORTHO05D002006 6.2e-08 60.5 64 40.6
THA.LOC104822677 Tarenaya hassleriana HOM05D000764 ORTHO05D002006 6.2e-08 60.5 62 43.5
ClCG02G024010 Citrullus lanatus HOM05D000764 ORTHO05D002006 8.1e-08 60.1 70 40.0
Nn2g15811 Nelumbo nucifera HOM05D000764 ORTHO05D002006 8.1e-08 60.1 65 46.2
Atru.chr3.2354 Acer truncatum HOM05D000764 ORTHO05D002006 1.1e-07 59.7 70 42.9
COL.COLO4_35026 Corchorus olitorius HOM05D000764 ORTHO05D002006 1.1e-07 59.7 68 39.7
Lsat_1_v5_gn_6_51980 Lactuca sativa HOM05D000764 ORTHO05D002006 1.4e-07 59.3 62 37.1
AL1G63360 Arabidopsis lyrata HOM05D000764 ORTHO05D002006 1.8e-07 58.9 62 41.9
AT1G55320 Arabidopsis thaliana HOM05D000764 ORTHO05D002006 1.8e-07 58.9 62 41.9
Cpa.g.sc119.66 Carica papaya HOM05D000764 ORTHO05D018913 1.8e-07 58.9 68 42.6
DCAR_001986 Daucus carota HOM05D000764 ORTHO05D002006 2.4e-07 58.5 62 46.8
BraA06t23243Z Brassica rapa HOM05D000764 ORTHO05D002006 3.1e-07 58.2 62 38.7
Dinv23881 Davidia involucrata HOM05D000764 ORTHO05D002006 4.0e-07 57.8 64 48.4
Rhsim13G0231200 Rhododendron simsii HOM05D000764 ORTHO05D002006 4.0e-07 57.8 55 47.3
ATR0001G035 Amborella trichopoda HOM05D000764 ORTHO05D002006 5.2e-07 57.4 64 48.4
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 6.8e-07 57.0 62 38.7
Sp1g40980 Schrenkiella parvula HOM05D000764 ORTHO05D002006 6.8e-07 57.0 62 38.7
vmacro04225 Vaccinium macrocarpon HOM05D000764 ORTHO05D002006 8.9e-07 56.6 64 45.3
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 1.2e-06 56.2 62 38.7
Carub.0001s4382 Capsella rubella HOM05D000764 ORTHO05D002006 1.2e-06 56.2 62 37.1
Gorai.004G094400 Gossypium raimondii HOM05D000764 ORTHO05D002006 1.2e-06 56.2 47 51.1
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 2.0e-06 55.5 62 37.1
Thecc.09G209100 Theobroma cacao HOM05D000764 ORTHO05D002006 2.0e-06 55.5 49 46.9
MBI04_g09730_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D002006 2.6e-06 55.1 63 42.9
Rhsim13G0231100 Rhododendron simsii HOM05D000764 ORTHO05D002006 2.6e-06 55.1 56 48.2
Aa31LG10G1080 Aethionema arabicum HOM05D000764 ORTHO05D002006 3.4e-06 54.7 62 35.5
Gohir.A08G079900 Gossypium hirsutum HOM05D000764 ORTHO05D002006 3.4e-06 54.7 47 51.1
Cc01_g02010 Coffea canephora HOM05D000764 ORTHO05D002006 4.4e-06 54.3 70 41.4
HanXRQChr02g0056931 Helianthus annuus HOM05D000764 ORTHO05D002006 4.4e-06 54.3 54 38.9
Oeu024288.1 Olea europaea HOM05D000764 ORTHO05D002006 4.4e-06 54.3 63 41.3
Os03g0805500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D018913 4.4e-06 54.3 50 50.0
Eucgr.L00848 Eucalyptus grandis HOM05D000764 ORTHO05D002006 5.8e-06 53.9 76 40.8
Gohir.A13G212900 Gossypium hirsutum HOM05D000764 ORTHO05D002006 7.6e-06 53.5 64 34.4
Prupe.6G005900 Prunus persica HOM05D000764 ORTHO05D002006 7.6e-06 53.5 62 43.5
COL.COLO4_35021 Corchorus olitorius HOM05D000764 ORTHO05D002006 9.9e-06 53.1 39 51.3
Thhalv10011267m.g Eutrema salsugineum HOM05D000764 ORTHO05D002006 9.9e-06 53.1 62 40.3


User provided reference genes

Program Settings