Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 3.5e-109 398.3 198 100.0
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 4.5e-48 195.3 127 76.4
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 6.5e-47 191.4 127 74.8
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 4.6e-45 185.3 127 74.0
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 8.8e-44 181.0 148 66.2
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 5.3e-41 171.8 126 68.3
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 9.1e-41 171.0 128 68.0
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 3.4e-40 169.1 122 67.2
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 4.5e-40 168.7 129 65.1
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 1.3e-39 167.2 128 66.4
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 2.2e-39 166.4 128 66.4
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 3.8e-39 165.6 128 63.3
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 3.8e-39 165.6 128 66.4
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 6.5e-39 164.9 128 65.6
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 8.5e-39 164.5 128 64.1
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 1.4e-38 163.7 126 65.1
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 1.4e-38 163.7 128 64.8
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 1.4e-38 163.7 128 64.8
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 2.5e-38 162.9 128 61.7
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 7.2e-38 161.4 127 62.2
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 7.2e-38 161.4 129 62.8
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 1.2e-37 160.6 128 62.5
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 1.6e-37 160.2 128 63.3
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 2.1e-37 159.8 127 63.8
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 2.7e-37 159.5 146 56.8
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 4.7e-37 158.7 127 59.8
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 4.7e-37 158.7 128 61.7
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 1.8e-36 156.8 125 61.6
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 2.3e-36 156.4 135 61.5
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 2.3e-36 156.4 125 61.6
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 3.0e-36 156.0 121 62.8
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 3.0e-36 156.0 122 62.3
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 5.1e-36 155.2 122 63.9
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 6.7e-36 154.8 122 62.3
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 6.7e-36 154.8 128 61.7
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 8.8e-36 154.5 122 61.5
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.5e-35 153.7 129 60.5
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 1.5e-35 153.7 127 63.0
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 2.0e-35 153.3 126 61.9
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 3.3e-35 152.5 126 61.9
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 3.3e-35 152.5 126 61.9
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 7.4e-35 151.4 124 61.3
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 7.4e-35 151.4 129 59.7
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 9.7e-35 151.0 140 55.0
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 9.7e-35 151.0 127 60.6
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 9.7e-35 151.0 127 59.1
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 1.3e-34 150.6 128 61.7
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 1.7e-34 150.2 128 61.7
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 1.7e-34 150.2 128 61.7
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 2.2e-34 149.8 128 60.2
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 2.8e-34 149.4 129 55.0
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 3.7e-34 149.1 128 62.5
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 4.8e-34 148.7 128 58.6
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 8.2e-34 147.9 128 60.2
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 4.1e-33 145.6 126 60.3
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 5.3e-33 145.2 129 54.3
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 5.3e-33 145.2 146 52.7
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 7.0e-33 144.8 129 53.5
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 7.0e-33 144.8 129 53.5
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 7.0e-33 144.8 129 53.5
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 7.0e-33 144.8 129 53.5
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 7.0e-33 144.8 125 60.0
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 9.1e-33 144.4 124 60.5
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 2.0e-32 143.3 171 47.4
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 2.0e-32 143.3 121 57.9
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 2.6e-32 142.9 128 55.5
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 2.6e-32 142.9 124 59.7
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 2.9e-31 139.4 128 55.5
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 3.8e-31 139.0 127 54.3
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 8.5e-31 137.9 155 52.3
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 8.5e-31 137.9 129 51.2
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 1.1e-30 137.5 123 59.3
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 2.5e-30 136.3 127 55.9
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 7.2e-30 134.8 105 64.8
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 1.6e-29 133.7 127 53.5
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 3.6e-29 132.5 127 53.5
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 3.3e-27 125.9 125 52.8
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 1.8e-25 120.2 143 45.5
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 2.4e-25 119.8 126 47.6
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 2.4e-25 119.8 126 48.4
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 7.0e-25 118.2 127 46.5
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 7.0e-25 118.2 126 47.6
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 1.2e-24 117.5 104 60.6
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 2.0e-24 116.7 126 47.6
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 2.7e-24 116.3 129 44.2
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 7.7e-24 114.8 123 45.5
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 1.3e-23 114.0 126 45.2
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 1.3e-23 114.0 126 45.2
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.7e-23 113.6 126 46.0
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.7e-23 113.6 132 47.7
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.7e-23 113.6 126 46.8
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 2.9e-23 112.8 126 49.2
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 5.0e-23 112.1 83 68.7
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 5.0e-23 112.1 118 47.5
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 5.0e-23 112.1 138 42.0
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 6.5e-23 111.7 120 46.7
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.5e-22 110.5 126 45.2
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 1.9e-22 110.2 127 42.5
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 2.5e-22 109.8 148 41.2
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 3.2e-22 109.4 118 45.8
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 4.2e-22 109.0 127 44.9
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 2.1e-21 106.7 118 45.8
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 4.7e-21 105.5 127 44.9
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 4.7e-21 105.5 120 50.0
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 5.2e-20 102.1 126 42.9
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 5.2e-20 102.1 129 41.9
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.5e-19 100.5 89 58.4
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 4.4e-19 99.0 118 47.5
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 4.4e-19 99.0 129 41.9
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 9.8e-19 97.8 152 40.8
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 1.3e-18 97.4 129 41.1
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.3e-18 97.4 126 42.9
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 1.7e-18 97.1 148 41.9
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 2.2e-18 96.7 70 74.3
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 3.1e-17 92.8 69 65.2
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 5.4e-17 92.0 130 43.1
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 2.0e-16 90.1 118 43.2
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 2.0e-16 90.1 127 40.2
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 3.8e-15 85.9 82 54.9
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 5.0e-15 85.5 70 64.3
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 6.8e-12 75.1 66 56.1
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 1.5e-11 73.9 129 34.1
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 2.6e-11 73.2 94 42.6
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 3.4e-11 72.8 119 36.1
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 3.1e-09 66.2 91 40.7
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 1.0e-07 61.2 45 68.9
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 1.7e-07 60.5 55 50.9
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 3.8e-07 59.3 55 49.1
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 2.5e-06 56.6 76 31.6


User provided reference genes

Program Settings