Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 1.4e-167 592.8 295 100.0
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 2.0e-108 396.4 260 78.5
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 1.2e-105 387.1 260 76.5
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 1.3e-104 383.6 261 75.1
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 1.2e-102 377.1 283 68.6
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 5.2e-101 371.7 260 73.8
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 4.4e-100 368.6 260 72.7
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.7e-99 366.7 260 72.3
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 2.4e-98 362.8 260 71.5
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 2.7e-97 359.4 260 71.5
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 3.5e-97 359.0 260 70.4
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 3.5e-97 359.0 260 69.6
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 4.6e-97 358.6 260 70.0
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 6.0e-97 358.2 260 70.8
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 7.8e-97 357.8 260 69.6
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 1.3e-96 357.1 260 70.0
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 3.9e-96 355.5 260 69.6
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 3.9e-96 355.5 260 69.6
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 8.6e-96 354.4 260 68.8
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 1.1e-95 354.0 260 67.3
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.9e-95 353.2 260 70.8
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.5e-95 352.8 260 69.2
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 2.5e-95 352.8 258 70.2
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.6e-95 351.7 272 65.1
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 9.5e-95 350.9 260 70.4
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 2.1e-94 349.7 256 71.5
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.1e-94 349.7 261 69.0
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.1e-94 349.7 261 69.0
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 2.1e-94 349.7 260 70.0
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 3.6e-94 349.0 258 68.2
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-93 347.4 272 64.7
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 1.4e-93 347.1 260 67.7
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 2.3e-93 346.3 262 67.9
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 3.1e-93 345.9 268 67.2
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.1e-93 345.9 272 64.0
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.0e-93 345.5 260 67.3
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.0e-93 345.5 260 67.3
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 6.8e-93 344.7 260 68.5
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 8.9e-93 344.4 260 67.3
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 8.9e-93 344.4 259 68.0
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 8.9e-93 344.4 260 68.5
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 1.2e-92 344.0 260 67.3
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 1.5e-92 343.6 260 68.1
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 1.5e-92 343.6 260 65.8
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 1.5e-92 343.6 260 69.2
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 2.0e-92 343.2 260 68.1
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 2.6e-92 342.8 260 65.4
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 3.4e-92 342.4 260 68.1
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 3.4e-92 342.4 260 67.7
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 4.4e-92 342.0 260 66.9
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 4.4e-92 342.0 260 65.4
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 5.8e-92 341.7 260 65.4
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 2.2e-91 339.7 260 67.7
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 8.3e-91 337.8 259 68.0
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 8.3e-91 337.8 260 66.2
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 5.4e-90 335.1 260 65.4
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 1.7e-88 330.1 260 64.6
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.7e-88 330.1 260 65.4
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 3.9e-88 328.9 232 72.8
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 5.1e-88 328.6 260 65.8
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 1.5e-87 327.0 261 63.6
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 3.3e-87 325.9 263 64.3
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 1.2e-86 323.9 260 63.1
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 2.8e-86 322.8 260 64.6
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 2.8e-86 322.8 261 64.0
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 1.8e-85 320.1 260 63.5
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 4.0e-85 318.9 299 57.9
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 8.9e-85 317.8 232 69.8
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 2.0e-84 316.6 260 63.5
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 2.6e-84 316.2 260 62.7
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 4.4e-84 315.5 260 63.5
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 7.6e-84 314.7 243 67.9
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 1.7e-83 313.5 262 63.4
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 1.7e-83 313.5 260 62.3
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 2.2e-83 313.2 260 62.3
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 2.9e-83 312.8 268 59.7
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 4.9e-83 312.0 260 61.9
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 4.9e-83 312.0 260 60.4
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 6.4e-83 311.6 260 61.2
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 6.4e-83 311.6 260 63.5
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 1.1e-82 310.8 260 61.5
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 1.4e-82 310.5 260 61.5
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 1.4e-82 310.5 260 61.5
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 2.4e-82 309.7 260 62.7
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 3.2e-82 309.3 260 61.2
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 3.2e-82 309.3 260 61.5
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 5.4e-82 308.5 260 64.6
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 9.2e-82 307.8 260 61.2
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 3.5e-81 305.8 260 61.2
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 3.5e-81 305.8 267 60.3
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 6.0e-81 305.1 260 59.6
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 7.8e-81 304.7 260 60.4
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 7.8e-81 304.7 262 60.3
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 1.3e-80 303.9 262 59.9
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 1.3e-80 303.9 260 60.4
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 2.3e-80 303.1 261 61.3
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 3.9e-80 302.4 227 70.9
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 3.9e-80 302.4 260 61.2
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 2.5e-79 299.7 260 60.0
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 7.3e-79 298.1 260 60.0
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 2.9e-75 286.2 251 59.4
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 3.8e-75 285.8 260 58.5
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 3.8e-75 285.8 260 60.0
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 3.8e-75 285.8 260 60.0
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 6.4e-75 285.0 260 58.1
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 8.4e-75 284.6 260 58.5
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 3.6e-70 269.2 212 65.6
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.8e-69 266.9 260 56.9
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 4.0e-69 265.8 266 57.1
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 4.0e-69 265.8 260 52.3
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 9.0e-69 264.6 262 52.7
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 2.9e-67 259.6 265 54.3
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 3.8e-67 259.2 245 54.7
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 2.1e-65 253.4 260 54.6
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 6.0e-65 251.9 261 53.3
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 6.7e-64 248.4 261 52.1
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 6.7e-64 248.4 287 52.6
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 6.7e-64 248.4 287 52.6
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 7.4e-63 245.0 260 53.8
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.5e-55 220.7 259 45.2
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 2.9e-51 206.5 199 55.3
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 4.3e-47 192.6 259 42.1
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 3.1e-45 186.4 260 42.3
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.9e-43 179.9 157 58.6
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 2.7e-41 173.3 260 39.2
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 2.8e-38 163.3 263 39.5
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 5.3e-37 159.1 239 39.3
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 5.3e-37 159.1 264 35.6
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.9e-37 158.7 101 76.2
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.0e-36 157.1 101 75.2
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 2.1e-33 147.1 165 49.7
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 2.6e-31 140.2 230 41.3
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 7.2e-26 122.1 73 78.1
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 2.1e-25 120.6 126 53.2
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 5.7e-23 112.5 83 69.9
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.2e-20 104.8 101 58.4
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 7.7e-20 102.1 68 69.1
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 5.5e-18 95.9 79 59.5
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 3.6e-17 93.2 100 55.0
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.0e-16 91.7 51 84.3
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 3.0e-16 90.1 157 40.1
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.0e-16 89.7 51 80.4
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.0e-16 89.7 51 80.4
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.2e-15 88.2 51 82.4
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.7e-14 84.3 51 78.4
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 3.8e-11 73.2 244 29.1
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 5.0e-11 72.8 58 63.8
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.1e-10 71.6 51 72.5
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 4.2e-10 69.7 66 53.0
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 9.8e-07 58.5 60 55.0


User provided reference genes

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