Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 3.0e-272 941.4 533 100.0
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 2.8e-68 263.8 362 50.3
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 8.1e-68 262.3 302 61.9
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 4.4e-66 256.5 378 48.4
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 6.4e-65 252.7 309 46.0
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 8.3e-65 252.3 346 52.3
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 1.4e-64 251.5 346 43.1
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 7.1e-64 249.2 349 48.7
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 7.1e-64 249.2 375 47.2
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 9.2e-64 248.8 387 44.7
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 9.2e-64 248.8 312 51.3
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 1.2e-63 248.4 367 47.4
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 1.6e-63 248.1 309 46.9
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 2.7e-63 247.3 346 50.0
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 4.6e-63 246.5 309 51.8
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 1.0e-62 245.4 309 48.2
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.0e-62 245.4 309 48.2
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 1.0e-62 245.4 346 52.6
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 1.3e-62 245.0 345 43.8
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 1.3e-62 245.0 346 52.9
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.7e-62 244.6 307 48.9
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 2.3e-62 244.2 288 51.4
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 2.3e-62 244.2 442 43.2
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 3.0e-62 243.8 360 49.2
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 5.1e-62 243.0 309 46.3
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 6.6e-62 242.7 348 48.6
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 1.1e-61 241.9 346 45.1
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 1.5e-61 241.5 309 45.0
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 2.5e-61 240.7 306 50.7
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 2.5e-61 240.7 356 49.4
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 1.6e-60 238.0 346 43.9
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 2.8e-60 237.3 369 45.5
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 3.6e-60 236.9 345 51.3
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 6.2e-60 236.1 305 44.3
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 6.2e-60 236.1 363 47.7
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.4e-59 235.0 254 52.8
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 8.9e-59 232.3 309 43.4
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 1.2e-58 231.9 346 52.3
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 1.5e-58 231.5 346 45.1
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 2.6e-58 230.7 356 48.3
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 7.6e-58 229.2 342 48.0
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 1.3e-57 228.4 355 51.0
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 1.7e-57 228.0 346 46.2
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 1.9e-56 224.6 309 41.4
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 5.4e-56 223.0 254 50.4
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 3.5e-55 220.3 386 49.2
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 3.0e-54 217.2 425 34.6
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.9e-54 216.9 307 45.9
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 3.9e-54 216.9 346 52.0
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 6.6e-54 216.1 349 50.1
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 8.6e-54 215.7 349 51.9
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 1.5e-53 214.9 346 51.4
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 1.9e-53 214.5 343 44.9
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 1.9e-53 214.5 346 51.7
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 3.3e-53 213.8 370 44.1
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 4.3e-53 213.4 346 51.4
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 5.6e-53 213.0 366 49.5
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 7.3e-53 212.6 353 47.0
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 9.6e-53 212.2 363 49.6
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 9.6e-53 212.2 303 44.2
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 1.2e-52 211.8 351 51.0
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 1.2e-52 211.8 309 46.9
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 2.4e-51 207.6 292 47.9
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 5.2e-51 206.5 292 46.9
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 4.4e-50 203.4 346 42.5
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 2.2e-49 201.1 170 63.5
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 2.9e-49 200.7 289 42.9
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 2.9e-49 200.7 292 41.4
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 4.9e-49 199.9 312 39.7
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 6.4e-49 199.5 289 41.9
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 8.4e-49 199.1 213 52.1
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 1.1e-48 198.7 289 41.9
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.4e-48 198.4 343 48.7
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 5.4e-48 196.4 289 41.2
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 2.1e-47 194.5 215 56.7
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 3.5e-47 193.7 289 40.8
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 3.9e-46 190.3 288 40.3
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 1.9e-45 188.0 304 45.4
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 5.6e-45 186.4 305 39.3
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 5.6e-45 186.4 428 36.7
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 7.3e-45 186.0 293 38.2
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 1.3e-44 185.3 352 42.3
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 6.2e-44 183.0 305 52.5
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 9.0e-43 179.1 201 49.8
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 2.9e-41 174.1 201 44.8
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 2.9e-41 174.1 211 51.2
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 3.2e-40 170.6 292 48.6
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 1.2e-39 168.7 334 43.1
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 2.3e-38 164.5 189 47.6
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 2.3e-38 164.5 288 39.6
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 2.6e-34 151.0 312 39.1
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 9.9e-34 149.1 375 38.7
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.9e-32 144.8 202 55.0
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 7.1e-32 142.9 351 38.5
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 7.1e-32 142.9 251 46.6
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 2.7e-31 141.0 349 37.8
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 2.7e-31 141.0 183 47.0
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 4.6e-31 140.2 238 56.7
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 2.3e-30 137.9 165 53.3
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 3.9e-30 137.1 251 49.4
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 2.5e-29 134.4 277 35.4
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 3.3e-29 134.0 308 32.1
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 1.3e-28 132.1 222 49.1
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 9.3e-24 115.9 162 40.1
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 3.5e-23 114.0 228 42.5
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 6.0e-23 113.2 224 51.8
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 1.0e-22 112.5 172 40.1
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 1.1e-21 109.0 143 45.5
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.5e-21 108.6 145 45.5
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 7.4e-21 106.3 145 44.1
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 1.6e-20 105.1 128 44.5
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 8.2e-20 102.8 143 44.1
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 6.5e-17 93.2 135 38.5
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 1.0e-14 85.9 97 48.5
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 2.3e-14 84.7 171 33.9
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 5.7e-13 80.1 95 49.5
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 3.7e-12 77.4 96 47.9
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 5.3e-11 73.6 82 47.6
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 6.9e-11 73.2 78 51.3
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 9.0e-11 72.8 147 34.0
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 1.2e-10 72.4 160 30.6
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 2.2e-09 68.2 77 49.4
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 2.2e-09 68.2 53 60.4
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 3.8e-09 67.4 137 48.9
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 2.5e-08 64.7 58 51.7
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 2.5e-08 64.7 58 51.7
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 1.0e-06 59.3 81 44.4
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 5.1e-06 57.0 72 38.9
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 6.7e-06 56.6 30 83.3


User provided reference genes

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