Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 0.0e+00 2567.3 1330 100.0
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1966.8 1382 75.5
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1858.2 1354 73.2
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 0.0e+00 1802.7 1365 70.3
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1795.8 1342 71.0
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 0.0e+00 1793.5 1346 70.7
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 0.0e+00 1791.2 1375 69.8
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 0.0e+00 1787.7 1355 70.8
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1786.5 1353 70.3
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 0.0e+00 1785.8 1359 70.1
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 0.0e+00 1783.1 1352 70.3
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 0.0e+00 1780.4 1345 70.1
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1776.9 1398 69.4
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 0.0e+00 1773.4 1352 69.7
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 0.0e+00 1773.1 1348 70.6
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 0.0e+00 1766.5 1347 69.6
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 0.0e+00 1766.1 1344 69.8
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 0.0e+00 1764.2 1353 70.2
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 0.0e+00 1762.3 1331 70.8
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1758.8 1354 69.9
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1755.7 1339 69.7
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1755.7 1353 70.0
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 0.0e+00 1754.2 1353 70.1
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 0.0e+00 1753.0 1312 70.7
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 0.0e+00 1752.6 1367 68.2
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 0.0e+00 1751.5 1333 70.7
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 0.0e+00 1750.7 1356 69.5
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 0.0e+00 1750.3 1352 69.3
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1745.3 1340 69.9
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1742.6 1312 70.4
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1734.9 1357 68.0
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 0.0e+00 1731.5 1353 69.0
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 0.0e+00 1731.1 1352 68.2
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 0.0e+00 1723.4 1361 67.9
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 0.0e+00 1719.9 1350 68.7
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 0.0e+00 1719.1 1350 67.9
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 0.0e+00 1716.4 1352 68.1
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 0.0e+00 1714.5 1344 68.2
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 0.0e+00 1710.3 1294 69.8
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 0.0e+00 1706.4 1294 69.5
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 0.0e+00 1706.0 1330 69.0
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 0.0e+00 1705.3 1354 68.0
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 0.0e+00 1701.4 1323 68.1
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 0.0e+00 1699.9 1357 68.8
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1698.7 1323 68.9
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 0.0e+00 1698.3 1367 67.5
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 0.0e+00 1697.9 1331 67.1
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1696.8 1354 67.7
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 0.0e+00 1696.4 1283 69.3
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 0.0e+00 1695.6 1354 67.1
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 0.0e+00 1692.6 1355 68.6
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 0.0e+00 1691.4 1335 68.1
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 0.0e+00 1688.3 1354 68.3
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 0.0e+00 1686.0 1324 67.8
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 0.0e+00 1681.0 1378 66.1
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 0.0e+00 1680.2 1358 67.6
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1679.8 1352 68.0
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 0.0e+00 1672.5 1271 68.6
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1672.1 1291 68.0
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1672.1 1291 68.0
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 0.0e+00 1670.2 1365 67.0
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1669.8 1289 68.0
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 0.0e+00 1667.5 1275 68.2
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 0.0e+00 1667.1 1492 61.9
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1666.0 1273 68.1
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 0.0e+00 1665.2 1302 67.1
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1664.4 1273 68.1
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1662.9 1273 68.0
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1662.9 1287 67.5
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1662.9 1273 68.0
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1660.6 1276 68.1
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 0.0e+00 1658.3 1333 67.7
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1657.5 1336 66.9
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 0.0e+00 1651.3 1351 64.9
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 0.0e+00 1651.3 1288 67.4
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 0.0e+00 1645.9 1183 74.3
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1640.6 1282 67.9
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 0.0e+00 1635.9 1272 67.2
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 0.0e+00 1634.0 1350 64.1
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 0.0e+00 1629.8 1352 64.9
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1628.2 1271 67.1
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 0.0e+00 1623.2 1329 64.9
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 0.0e+00 1623.2 1171 74.4
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1622.8 1271 67.3
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 0.0e+00 1622.1 1354 65.7
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1621.7 1354 64.3
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 0.0e+00 1610.1 1385 63.5
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1601.6 1204 71.8
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 0.0e+00 1590.1 1325 65.9
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 0.0e+00 1553.9 1272 65.5
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1546.2 1341 63.1
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1518.4 1271 64.0
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 0.0e+00 1513.8 1338 61.9
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1479.5 1132 71.2
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 0.0e+00 1474.5 1337 60.0
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 0.0e+00 1456.4 1127 67.3
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 0.0e+00 1439.5 1128 69.1
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 0.0e+00 1372.8 1199 61.2
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 0.0e+00 1370.1 1346 55.8
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 0.0e+00 1341.3 1101 66.3
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 0.0e+00 1307.4 1350 55.0
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1186.0 1078 61.3
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1137.5 830 72.7
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 0.0e+00 1100.1 1369 46.5
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 1.0e-292 1010.7 1312 44.4
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 1.3e-292 1010.4 1291 44.0
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 9.3e-291 1004.2 1304 43.7
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 2.6e-285 986.1 1354 43.1
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 4.8e-279 965.3 782 66.2
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 2.9e-244 849.7 1266 41.5
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 2.3e-233 813.5 804 59.0
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 3.4e-168 597.0 1301 33.1
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.9e-168 596.3 675 52.9
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 2.7e-165 587.4 1178 31.2
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 7.7e-144 516.2 537 56.8
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 1.2e-109 402.5 339 63.1
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 1.6e-109 402.1 348 67.2
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 3.1e-92 344.7 1109 26.2
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 4.2e-81 307.8 1112 25.3
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 1.8e-63 249.2 268 53.4
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 1.8e-63 249.2 268 53.4
MBI15_g03986_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.9e-55 221.5 213 56.8
MBI13_g41158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.3e-54 218.0 220 55.0
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 4.3e-54 218.0 269 48.3
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 5.7e-54 217.6 1078 24.1
MBI13_g41314_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.1e-52 213.4 221 53.8
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.6e-48 199.5 182 62.6
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.6e-48 199.5 182 62.6
MBI06_g41970_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.0e-46 192.6 184 57.1
SEGI_14640 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 4.1e-44 184.9 229 43.2
SHI28279 Sapria himalayana HOM05D004602 ORTHO05D005906 1.2e-43 183.3 168 54.8
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 3.8e-42 178.3 178 54.5
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.0e-39 170.2 149 66.4
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 4.5e-35 154.8 136 62.5
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 8.0e-32 144.1 118 62.7
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 8.8e-31 140.6 85 84.7
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 5.9e-27 127.9 132 54.5
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 3.8e-26 125.2 98 65.3
MBI15_g38850_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.2e-25 122.1 148 52.7
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.2e-25 120.9 101 70.3
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.7e-24 118.2 71 84.5
MBI13_g46003_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.7e-24 118.2 105 58.1
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.0e-23 115.5 99 68.7
HanXRQChr05g0161121 Helianthus annuus HOM05D004602 ORTHO05D005906 2.6e-22 112.5 92 62.0
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 2.2e-21 109.4 66 86.4
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 2.2e-21 109.4 66 86.4
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 9.1e-20 104.0 63 84.1
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 3.5e-19 102.1 61 82.0
PGSC0003DMG400020858 Solanum tuberosum HOM05D004602 ORTHO05D005906 1.1e-17 97.1 107 47.7
Rhsim06G0100000 Rhododendron simsii HOM05D004602 ORTHO05D005906 1.9e-17 96.3 90 54.4
MBI08_g05534_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.2e-17 94.4 64 73.4
MBI16_g48278_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.1e-16 91.3 69 65.2
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 1.4e-15 90.1 62 66.1
PGSC0003DMG400020862 Solanum tuberosum HOM05D004602 ORTHO05D005906 2.0e-14 86.3 94 46.8
MELO3C029978.2 Cucumis melo HOM05D004602 ORTHO05D000002 1.1e-12 80.5 69 60.9
COL.COLO4_34262 Corchorus olitorius HOM05D004602 ORTHO05D014120 2.9e-10 72.4 82 53.7
PGSC0003DMG400004177 Solanum tuberosum HOM05D002370 ORTHO05D003878 3.9e-10 72.0 58 65.5
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.4e-07 63.5 70 50.0
GSVIVG01003891001 Vitis vinifera HOM05D013764 ORTHO05D014120 2.0e-06 59.7 75 52.0


User provided reference genes

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