Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.5e-133 479.6 245 100.0
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 3.0e-94 349.0 291 66.3
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 2.5e-93 345.9 294 66.0
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 6.3e-92 341.3 294 65.6
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 1.4e-91 340.1 294 65.6
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 1.8e-91 339.7 294 65.6
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 1.5e-90 336.7 294 64.6
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 2.0e-90 336.3 294 63.6
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 2.6e-90 335.9 291 65.6
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.3e-89 333.6 294 65.0
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 1.3e-89 333.6 294 62.9
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.7e-89 333.2 294 65.6
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 2.9e-89 332.4 294 64.3
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 8.5e-89 330.9 294 63.9
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 1.1e-88 330.5 294 63.3
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 1.1e-88 330.5 295 62.7
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.9e-88 329.7 295 62.0
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.9e-88 329.7 295 62.0
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.6e-87 326.6 295 62.0
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 1.6e-87 326.6 295 62.7
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.7e-87 325.9 294 61.9
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 6.1e-87 324.7 289 63.3
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 6.1e-87 324.7 294 61.9
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 7.9e-87 324.3 294 61.6
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.4e-86 323.6 294 61.6
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 1.4e-86 323.6 294 62.6
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.4e-86 323.6 295 62.0
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 1.4e-86 323.6 295 62.0
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 3.0e-86 322.4 328 57.6
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 3.0e-86 322.4 295 60.3
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 3.9e-86 322.0 294 60.9
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 5.1e-86 321.6 294 62.9
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 6.7e-86 321.2 290 61.7
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 6.7e-86 321.2 294 61.6
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 6.7e-86 321.2 293 61.8
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 1.1e-85 320.5 294 61.6
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.1e-85 320.5 294 61.2
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.5e-85 320.1 320 58.8
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 1.5e-85 320.1 291 60.5
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.6e-85 319.3 294 60.9
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 3.3e-85 318.9 294 62.2
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 4.4e-85 318.5 294 62.2
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 4.4e-85 318.5 295 62.4
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 1.3e-84 317.0 294 60.5
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.3e-84 317.0 292 59.2
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 1.3e-84 317.0 295 61.4
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.7e-84 316.6 294 60.2
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 2.2e-84 316.2 295 61.4
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.2e-84 316.2 295 58.3
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 3.7e-84 315.5 294 61.2
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 4.8e-84 315.1 292 61.3
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 4.8e-84 315.1 294 61.2
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 6.3e-84 314.7 324 56.8
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 6.3e-84 314.7 295 58.0
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 8.2e-84 314.3 296 59.8
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 1.4e-83 313.5 294 60.2
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.4e-83 313.5 291 61.5
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 3.1e-83 312.4 306 58.8
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 3.1e-83 312.4 306 58.8
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 3.1e-83 312.4 285 58.9
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 3.1e-83 312.4 296 59.5
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 9.1e-83 310.8 306 58.8
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 2.0e-82 309.7 298 57.0
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 2.6e-82 309.3 292 59.2
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 4.5e-82 308.5 295 59.3
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 5.9e-82 308.1 328 56.7
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 7.7e-82 307.8 289 61.2
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 1.3e-81 307.0 295 58.6
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 2.9e-81 305.8 287 60.3
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 2.9e-81 305.8 317 55.5
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.8e-81 305.4 291 60.5
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 6.5e-81 304.7 297 58.9
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 1.1e-80 303.9 289 60.2
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 1.4e-80 303.5 294 59.2
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 1.4e-80 303.5 295 56.6
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 5.5e-80 301.6 292 58.9
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.2e-79 300.4 290 59.0
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 6.1e-79 298.1 289 58.5
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 7.9e-79 297.7 291 58.1
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.0e-78 297.4 297 58.2
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 1.4e-78 297.0 295 57.3
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.8e-78 296.6 288 59.4
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 3.0e-78 295.8 305 57.0
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.1e-77 293.9 288 58.3
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 2.6e-77 292.7 352 50.0
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 1.3e-76 290.4 307 55.4
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 2.2e-76 289.7 294 57.1
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 2.2e-76 289.7 290 57.6
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 8.2e-76 287.7 294 57.5
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 4.1e-75 285.4 291 56.7
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 7.0e-75 284.6 297 55.2
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.7e-73 280.0 296 56.1
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 2.9e-73 279.3 292 56.2
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 2.9e-73 279.3 288 56.2
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 3.8e-73 278.9 294 56.1
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 6.5e-73 278.1 279 58.4
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.1e-72 277.3 297 55.9
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 2.5e-72 276.2 321 51.1
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 7.2e-72 274.6 290 55.5
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 4.7e-71 271.9 306 53.3
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 8.8e-70 267.7 289 54.7
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 1.5e-69 266.9 297 51.9
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.5e-69 266.9 294 53.7
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 3.3e-69 265.8 295 55.3
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 5.7e-69 265.0 333 49.8
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 9.7e-69 264.2 285 54.4
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 1.3e-68 263.8 284 54.9
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 1.7e-68 263.5 283 55.1
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 2.8e-68 262.7 294 54.1
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 3.7e-68 262.3 271 55.4
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 5.9e-66 255.0 287 54.0
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 5.9e-66 255.0 295 53.2
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 1.0e-65 254.2 228 61.0
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.9e-65 252.7 240 62.1
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.9e-64 250.0 287 51.6
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.0e-62 244.2 294 53.4
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 1.8e-62 243.4 229 58.1
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 8.8e-62 241.1 254 53.1
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 8.8e-62 241.1 299 48.8
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 5.7e-61 238.4 162 77.2
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 7.5e-61 238.0 281 53.0
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 1.3e-60 237.3 163 74.8
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.2e-58 230.7 290 46.6
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 5.9e-58 228.4 307 44.3
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 9.5e-56 221.1 304 46.7
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 3.0e-54 216.1 325 43.4
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 3.4e-53 212.6 216 56.9
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 8.3e-52 208.0 270 48.9
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.2e-50 204.1 243 51.4
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.6e-50 203.8 273 46.2
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 2.7e-50 203.0 285 47.4
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 5.9e-50 201.8 291 46.0
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 7.8e-50 201.4 247 49.0
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 6.6e-49 198.4 257 48.2
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 1.4e-46 190.7 206 53.4
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.3e-46 189.9 205 53.2
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 2.7e-42 176.4 165 54.5
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 5.9e-42 175.3 204 51.5
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 1.1e-40 171.0 317 36.3
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 7.3e-40 168.3 318 38.7
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 2.8e-39 166.4 119 69.7
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 1.3e-33 147.5 333 33.6
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 4.7e-31 139.0 206 40.3
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 3.4e-29 132.9 176 48.9
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 1.9e-27 127.1 104 68.3
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 4.6e-26 122.5 90 70.0
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 2.2e-20 103.6 239 34.7
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 6.4e-20 102.1 115 53.0
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 2.4e-19 100.1 101 55.4
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 1.2e-18 97.8 275 30.5
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 6.0e-18 95.5 82 63.4
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 3.3e-16 89.7 154 37.7
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 7.3e-16 88.6 61 72.1
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 2.4e-14 83.6 60 68.3
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 3.8e-12 76.3 138 39.1
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 2.1e-10 70.5 49 61.2
SEGI_18914 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 2.7e-10 70.1 96 42.7
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 7.3e-08 62.0 42 61.9
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.8e-07 60.1 38 63.2


User provided reference genes

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